BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4540.p         (95 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777023.1| hypothetical protein Hsero_3637 [Herbaspiril...   132   2e-29
ref|YP_001098911.1| hypothetical protein HEAR0583 [Herminiimonas...    99   3e-19
ref|YP_001352250.1| hypothetical protein mma_0560 [Janthinobacte...    89   3e-16
ref|YP_004751788.1| hypothetical protein CFU_1133 [Collimonas fu...    82   2e-14
ref|YP_002945557.1| hypothetical protein Vapar_3674 [Variovorax ...    75   3e-12

>ref|YP_003777023.1| hypothetical protein Hsero_3637 [Herbaspirillum seropedicae SmR1]
 gb|ADJ65115.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 94

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 76/93 (81%), Positives = 83/93 (89%)

Query: 1  MSHPAASRLHAMRASLDALRTGQGNIAGLCSTWRAQEEVMTALPPRYRQVAEDLLGRLEA 60
          MSHPAA +L  MRA+LD LRTG+ +IA LCS WRA+ +VM ALPPRY+QVAEDLLGRLEA
Sbjct: 1  MSHPAAPQLALMRAALDDLRTGRASIADLCSAWRARSDVMNALPPRYQQVAEDLLGRLEA 60

Query: 61 GSLFTEESCSFSQKDLTDSLSTWLDKAQQTLES 93
          GSLFTEESCSFSQKDLTDSLSTWLDKAQQTL S
Sbjct: 61 GSLFTEESCSFSQKDLTDSLSTWLDKAQQTLAS 93


>ref|YP_001098911.1| hypothetical protein HEAR0583 [Herminiimonas arsenicoxydans]
 emb|CAL60784.1| conserved hypothetical protein [Herminiimonas arsenicoxydans]
          Length = 93

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 56/91 (61%), Positives = 66/91 (72%), Gaps = 2/91 (2%)

Query: 1  MSHPAASRLHAMRASLDALRTGQGNIAGLCSTWRAQEEVMTALPPRYRQVAEDLLGRLEA 60
          MSH     LH ++ SL A+R  +  IA  C +WR Q  +++ALPPRY +V EDLLGRLEA
Sbjct: 1  MSHDQT--LHLLQDSLHAIRQNRLAIADFCQSWRTQTALLSALPPRYAEVMEDLLGRLEA 58

Query: 61 GSLFTEESCSFSQKDLTDSLSTWLDKAQQTL 91
          GSLFTEESCSFSQ DL  +L  WLDKAQQTL
Sbjct: 59 GSLFTEESCSFSQVDLLANLDLWLDKAQQTL 89


>ref|YP_001352250.1| hypothetical protein mma_0560 [Janthinobacterium sp. Marseille]
 gb|ABR91199.1| Uncharacterized conserved protein [Janthinobacterium sp.
          Marseille]
          Length = 90

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 51/91 (56%), Positives = 63/91 (69%), Gaps = 2/91 (2%)

Query: 1  MSHPAASRLHAMRASLDALRTGQGNIAGLCSTWRAQEEVMTALPPRYRQVAEDLLGRLEA 60
          MSH     L  ++ SLDA+R  + ++A  C+TWR Q  ++ ALP  Y  V EDLLGRLEA
Sbjct: 1  MSH--TQTLQLLQESLDAIRQDRLSVADFCTTWRGQAGLLAALPGPYTTVMEDLLGRLEA 58

Query: 61 GSLFTEESCSFSQKDLTDSLSTWLDKAQQTL 91
          GSLFTEESCSFSQ DL  +L  WLD A++TL
Sbjct: 59 GSLFTEESCSFSQIDLLTTLDMWLDNARKTL 89


>ref|YP_004751788.1| hypothetical protein CFU_1133 [Collimonas fungivorans Ter331]
 gb|AEK60965.1| hypothetical protein CFU_1133 [Collimonas fungivorans Ter331]
          Length = 95

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/83 (54%), Positives = 59/83 (71%)

Query: 9  LHAMRASLDALRTGQGNIAGLCSTWRAQEEVMTALPPRYRQVAEDLLGRLEAGSLFTEES 68
          +  +  +L AL+     +A LC  WRAQ  +++ALPPR+ +VAE+ LGRLEA +LFTEES
Sbjct: 7  IQQLHEALSALQDKSSTVATLCQAWRAQTALLSALPPRFAEVAENFLGRLEASNLFTEES 66

Query: 69 CSFSQKDLTDSLSTWLDKAQQTL 91
          CSFSQ+DL D L  WLD+AQ  L
Sbjct: 67 CSFSQQDLLDHLHAWLDQAQLAL 89


>ref|YP_002945557.1| hypothetical protein Vapar_3674 [Variovorax paradoxus S110]
 gb|ACS20291.1| conserved hypothetical protein [Variovorax paradoxus S110]
          Length = 92

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/89 (48%), Positives = 61/89 (68%)

Query: 5  AASRLHAMRASLDALRTGQGNIAGLCSTWRAQEEVMTALPPRYRQVAEDLLGRLEAGSLF 64
          AA +L  + + + AL+ G G++A L +  R   E++ ALPPRY +V  +LL RLE+ +LF
Sbjct: 4  AARQLETIGSCIAALQGGGGSVAALSNEARTSSELLAALPPRYGEVLLNLLDRLESSALF 63

Query: 65 TEESCSFSQKDLTDSLSTWLDKAQQTLES 93
          +EESCSFSQKDL D+L  W D+A+  L S
Sbjct: 64 SEESCSFSQKDLLDNLQAWADRARAQLPS 92