BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4533.p (209 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777017.1| PadR-like family transcription regulator pro... 263 1e-68 ref|YP_004751794.1| PadR-like family transcriptional regulator [... 185 3e-45 ref|YP_428522.1| PadR family transcriptional regulator [Rhodospi... 129 4e-28 ref|YP_001686492.1| PadR-like family transcriptional regulator [... 127 8e-28 ref|YP_004237162.1| PadR-like family transcriptional regulator [... 127 2e-27 >ref|YP_003777017.1| PadR-like family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65109.1| PadR-like family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 191 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 137/148 (92%), Positives = 144/148 (97%) Query: 61 QGALRIVMLHLLQEKPRHGYDMIKAIEQLVGGGYSPSPGVIYPTLTLLEEMGHASVQGED 120 +GALRIVMLHLLQEKPRHGYDMIKAIEQLVGGGYSPSPGVIYPTLTLLEEMG+ASVQGED Sbjct: 43 RGALRIVMLHLLQEKPRHGYDMIKAIEQLVGGGYSPSPGVIYPTLTLLEEMGYASVQGED 102 Query: 121 GGKKLYTLSAEGKAYLEEKENAELLQQVLRKFELRRQERPDADSPELRRAVQNFRMALHT 180 GGKKLYTLS EG+A+LEEK+N LQQVLRKFELRRQERPDADSPEL+RAVQNFRMALHT Sbjct: 103 GGKKLYTLSPEGQAHLEEKDNVAALQQVLRKFELRRQERPDADSPELQRAVQNFRMALHT 162 Query: 181 RLAKGKLAKEELHAIIDIIDRAAVAVER 208 RLAKGKLA+EELHAIIDIIDRAAVAVER Sbjct: 163 RLAKGKLAREELHAIIDIIDRAAVAVER 190 >ref|YP_004751794.1| PadR-like family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK60971.1| Transcriptional Regulator, PadR-like family [Collimonas fungivorans Ter331] Length = 189 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 113/195 (57%), Positives = 142/195 (72%), Gaps = 16/195 (8%) Query: 14 HGPKHQRHDRPHHGGGLFEDDEPRGPRGHHGPGGREGGGGRGARMFEQGALRIVMLHLLQ 73 H HQ H+R H GGGLFE GGRG RMFEQG+LR+V+L LLQ Sbjct: 10 HSRMHQGHERQHRGGGLFERGG-------------RREGGRGGRMFEQGSLRLVILKLLQ 56 Query: 74 EKPRHGYDMIKAIEQLVGGGYSPSPGVIYPTLTLLEEMGHASVQGEDGGKKLYTLSAEGK 133 EKPRHGY++IKAIE+LVGG YSPSPGVIYPTLTLLEE+G+ +++ E GGKKLY ++AEG Sbjct: 57 EKPRHGYEVIKAIEELVGGDYSPSPGVIYPTLTLLEELGYTAIEAETGGKKLYRITAEGS 116 Query: 134 AYLEEKENAELLQQVLRKFELRRQERPDADSPELRRAVQNFRMALHTRLAKGKLAKEELH 193 A+L EN+E L L++ E Q + +PELRRA+QNFRMALHTRL KG+L+++++H Sbjct: 117 AFL--AENSEALALALQRLE-TAQRASGSSAPELRRAIQNFRMALHTRLEKGELSQDQIH 173 Query: 194 AIIDIIDRAAVAVER 208 AI+D ID AAV +ER Sbjct: 174 AIVDAIDLAAVKIER 188 >ref|YP_428522.1| PadR family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gb|ABC24235.1| transcriptional regulator, PadR family [Rhodospirillum rubrum ATCC 11170] gb|AEO49986.1| PadR family transcriptional regulator [Rhodospirillum rubrum F11] Length = 204 Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 67/154 (43%), Positives = 100/154 (64%), Gaps = 2/154 (1%) Query: 56 ARMFEQGALRIVMLHLLQEKPRHGYDMIKAIEQLVGGGYSPSPGVIYPTLTLLEEMGHAS 115 R F+ G LR V+L L+ +KP HGY++IKAIE VGG YSPSPGVIYPTLTLL+E+G+ + Sbjct: 53 GRFFDHGDLRFVILGLIADKPSHGYELIKAIEDRVGGAYSPSPGVIYPTLTLLDELGYVT 112 Query: 116 VQGEDGGKKLYTLSAEGKAYLEEKENAELLQQVLRKFELRRQERPDADSPELRRAVQNFR 175 V E G +KLY ++ EG A+LE N + + V + + + R +P++ RA++N + Sbjct: 113 VSTETGPRKLYAITDEGLAFLE--ANRDTVTAVFARMDEAGERRGGGTAPQIVRAIENLK 170 Query: 176 MALHTRLAKGKLAKEELHAIIDIIDRAAVAVERA 209 + + RL +G L++ E I +D AA +ER+ Sbjct: 171 LTVRLRLDRGPLSEAETETIAKALDDAAATIERS 204 >ref|YP_001686492.1| PadR-like family transcriptional regulator [Caulobacter sp. K31] gb|ABZ73994.1| transcriptional regulator, PadR-like family [Caulobacter sp. K31] Length = 189 Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 78/183 (42%), Positives = 108/183 (59%), Gaps = 3/183 (1%) Query: 25 HHGGGLFEDDEPRGPRGHHGPGGREGGGGRGARMFEQGALRIVMLHLLQEKPRHGYDMIK 84 HH G R P G HG G GGR R F+ G LR+V+L L+ +KP HGY++IK Sbjct: 8 HHPEGRQGGHHSRHPFGFHGHEGHHRRGGRMGRFFDHGDLRLVVLKLIADKPSHGYELIK 67 Query: 85 AIEQLVGGGYSPSPGVIYPTLTLLEEMGHASVQGEDGGKKLYTLSAEGKAYLEEKENAEL 144 A+E GG Y+PSPGVIYPTLTLLEE+G+ + GGKKLYT++ EG+A+LE N + Sbjct: 68 AVETAAGGAYTPSPGVIYPTLTLLEELGYVTAADAGGGKKLYTITDEGQAFLE--ANNQP 125 Query: 145 LQQVLRKFELRRQERPDADSPELRRAVQNFRMALHTRLAKGKLAKEELHAIIDIIDRAAV 204 + + + + SP++ RA +N + AL +L G L E++ AI +D AA Sbjct: 126 VHGLFTRMAEAAAQSAAF-SPQIMRARENLKTALRLKLTAGALTPEQVTAIAKAMDDAAA 184 Query: 205 AVE 207 +E Sbjct: 185 VIE 187 >ref|YP_004237162.1| PadR-like family transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX48595.1| transcriptional regulator, PadR-like family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 171 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 74/146 (50%), Positives = 98/146 (67%), Gaps = 5/146 (3%) Query: 64 LRIVMLHLLQEKPRHGYDMIKAIEQLVGGGYSPSPGVIYPTLTLLEEMGHASVQGEDGGK 123 LR+V+L L+ +KPRHGY++IKAIE+ +GG YSPSPGV+YPTLTLLEE+GH +V E GG+ Sbjct: 29 LRLVLLQLIADKPRHGYELIKAIEERLGGSYSPSPGVVYPTLTLLEELGHVTVSAEGGGR 88 Query: 124 KLYTLSAEGKAYLE-EKENAELLQQVLRKFELRRQERPDADSPELRRAVQNFRMALHTRL 182 KL+T + EG A+LE ++ L + R RP + RAV N R ALH RL Sbjct: 89 KLHTATPEGLAHLESHRDEVNALLARMADGMAHRGHRP----APVERAVHNLRQALHMRL 144 Query: 183 AKGKLAKEELHAIIDIIDRAAVAVER 208 A L E++HAI D++D AA +ER Sbjct: 145 AGAPLDTEQIHAIADLLDDAARRIER 170