BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4532.p (478 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777015.1| exodeoxyribonuclease I [Herbaspirillum serop... 791 0.0 ref|YP_004751796.1| exodeoxyribonuclease I [Collimonas fungivora... 737 0.0 ref|YP_002944544.1| exonuclease I [Variovorax paradoxus S110] >g... 714 0.0 ref|YP_549751.1| exonuclease I [Polaromonas sp. JS666] >gi|91698... 711 0.0 ref|YP_001352252.1| exonuclease I [Janthinobacterium sp. Marseil... 709 0.0 >ref|YP_003777015.1| exodeoxyribonuclease I [Herbaspirillum seropedicae SmR1] gb|ADJ65107.1| exodeoxyribonuclease I (3'-> 5' specific) protein [Herbaspirillum seropedicae SmR1] Length = 467 Score = 791 bits (2043), Expect = 0.0, Method: Composition-based stats. Identities = 385/433 (88%), Positives = 407/433 (93%) Query: 1 MYNHTFLWHDYETFGAVPRRDRPSQFAAVRTDAELNEIGEPIMLYCKPAPDYLPDPVSCL 60 M NHTFLWHDYETFGAVPRRDRP+QFAAVRTDAELNEIG PIM+YCKPAPDYLPDPVSCL Sbjct: 1 MSNHTFLWHDYETFGAVPRRDRPAQFAAVRTDAELNEIGAPIMIYCKPAPDYLPDPVSCL 60 Query: 61 ITGITPQHCLAHGVPEHEFAARIEQALGEPGTIGVGYNTIRFDDEVTRFMFWRNLIDPYA 120 ITGITPQHCLAHG+PEHEFAARIEQALGEPGTIGVGYNTIRFDDEVTRFMFWRNLIDPYA Sbjct: 61 ITGITPQHCLAHGLPEHEFAARIEQALGEPGTIGVGYNTIRFDDEVTRFMFWRNLIDPYA 120 Query: 121 REWANGCGRWDLLDVVRLTYALRPEGIQWPTKEDGSVSFKLEHLSKANGLVHEAAHDALS 180 REW NGCGRWDLLDVVRLTYALRP+GIQWP K+DGS+SFKLEHLSKANGLVHEAAHDALS Sbjct: 121 REWQNGCGRWDLLDVVRLTYALRPQGIQWPKKDDGSISFKLEHLSKANGLVHEAAHDALS 180 Query: 181 DVRATIALARLIRQNNPRLFDFALALHKKDKAAAEIGLPAAKPFLHVSGMFPVANGCLAL 240 DVRATIALARLIRQNNPRLFDFALAL+KKDKAAAEIGLP +PFLH SGMFPVA+GCLAL Sbjct: 181 DVRATIALARLIRQNNPRLFDFALALYKKDKAAAEIGLPVPRPFLHASGMFPVAHGCLAL 240 Query: 241 MWPLGMHPTNKNEVIAWDLGYDPSELAGMDAATVRERMFTKRDEMPEGMVRLPVKSIHLN 300 MWPLGMHPTNKNEVIAWDL +DPSELA +DAATVRER+F+KRD++PEG+ RLPVKSIHLN Sbjct: 241 MWPLGMHPTNKNEVIAWDLRHDPSELATLDAATVRERLFSKRDQLPEGVERLPVKSIHLN 300 Query: 301 KSPMVVGSIKTLSAERAAQLNIDVDLALRHAEKAAALPDLGPLWREVYQREHEASPDVDE 360 KSPMVVGS+KTLSAERAA+L+IDV+ ALRHA+KAAALPDL LW EVYQRE E DVDE Sbjct: 301 KSPMVVGSLKTLSAERAAELDIDVEAALRHADKAAALPDLTRLWSEVYQRESEGPADVDE 360 Query: 361 DLYGGFIGNGDRRQLTQLRALPPQALAGASVAFDDMRLNEILFRYRARNFPETLSPEEAQ 420 DLYGGFIGNGDRRQL QLRAL PQALA ASVAFDD RLNEILFRYRAR+FPETLSPEEAQ Sbjct: 361 DLYGGFIGNGDRRQLNQLRALSPQALATASVAFDDARLNEILFRYRARSFPETLSPEEAQ 420 Query: 421 HWEEHRAARLFEG 433 HWEEHRAA G Sbjct: 421 HWEEHRAAAPVRG 433 >ref|YP_004751796.1| exodeoxyribonuclease I [Collimonas fungivorans Ter331] gb|AEK60973.1| Exodeoxyribonuclease I [Collimonas fungivorans Ter331] Length = 477 Score = 737 bits (1902), Expect = 0.0, Method: Composition-based stats. Identities = 348/476 (73%), Positives = 403/476 (84%), Gaps = 1/476 (0%) Query: 1 MYNHTFLWHDYETFGAVPRRDRPSQFAAVRTDAELNEIGEPIMLYCKPAPDYLPDPVSCL 60 M HTFLWHDYETFG PRRDRP+QFAA+RTDAELNEIGEPIMLYC+PA D+LPDP SCL Sbjct: 1 MSTHTFLWHDYETFGVQPRRDRPAQFAAIRTDAELNEIGEPIMLYCQPANDFLPDPQSCL 60 Query: 61 ITGITPQHCLAHGVPEHEFAARIEQALGEPGTIGVGYNTIRFDDEVTRFMFWRNLIDPYA 120 ITGITPQ CL G+PE++FAA+IE+A E GTIGVGYNTIRFDDEVTRF+FWRNLIDPYA Sbjct: 61 ITGITPQQCLERGIPEYQFAAQIEKAFSEAGTIGVGYNTIRFDDEVTRFLFWRNLIDPYA 120 Query: 121 REWANGCGRWDLLDVVRLTYALRPEGIQWPTKEDGSVSFKLEHLSKANGLVHEAAHDALS 180 REW N CGRWD+LDVVR YALRPEGIQWP ++G SF+LE L+KANGL HEAAHDALS Sbjct: 121 REWQNQCGRWDILDVVRTAYALRPEGIQWPVNDEGRPSFRLELLTKANGLSHEAAHDALS 180 Query: 181 DVRATIALARLIRQNNPRLFDFALALHKKDKAAAEIGLPAAKPFLHVSGMFPVANGCLAL 240 DVRATIALARLIRQ+ P+LFDF LALHKKD+A AEIGLP +PFLH+SGMFP GCLA+ Sbjct: 181 DVRATIALARLIRQHQPKLFDFCLALHKKDRAGAEIGLPTPRPFLHISGMFPAEQGCLAV 240 Query: 241 MWPLGMHPTNKNEVIAWDLGYDPSELAGMDAATVRERMFTKRDEMPEGMVRLPVKSIHLN 300 MWPLG+HPTNKNE++AWDL +DPSEL +DA TVR R+F+K ++PEG+ RLP+KS+HLN Sbjct: 241 MWPLGVHPTNKNEILAWDLAFDPSELFSLDADTVRTRLFSKSADLPEGVTRLPLKSVHLN 300 Query: 301 KSPMVVGSIKTLSAERAAQLNIDVDLALRHAEKAAALPDLGPLWREVYQREHEASPDVDE 360 KSPMV+ ++TLSA+ + ID+ LALRHAE AA PDL LWR+V+QR EA+ DVDE Sbjct: 301 KSPMVINKLQTLSADMTTRWGIDIPLALRHAEIAAQAPDLSGLWRQVFQRPEEAASDVDE 360 Query: 361 DLYGGFIGNGDRRQLTQLRALPPQALAGASVAFDDMRLNEILFRYRARNFPETLSPEEAQ 420 DLYGGF+GN DRR+L LRA+PPQ LA A V+FDD RL E+ FRYRARNFP+TL+PEE + Sbjct: 361 DLYGGFVGNNDRRKLNDLRAMPPQKLAAARVSFDDQRLEELAFRYRARNFPDTLTPEEQE 420 Query: 421 HWEEHRAARLFEGAGGARTVAQLFEQIDQLQEEADDERTQDILGALYDYAEMIAPA 476 W+EHRAARLF+G G ARTV LFE+IDQL E A DER ++ILGALYDYAEMIAPA Sbjct: 421 RWDEHRAARLFDGEGKARTVDMLFEEIDQLSETA-DERGEEILGALYDYAEMIAPA 475 >ref|YP_002944544.1| exonuclease I [Variovorax paradoxus S110] gb|ACS19278.1| Exodeoxyribonuclease I [Variovorax paradoxus S110] Length = 479 Score = 714 bits (1843), Expect = 0.0, Method: Composition-based stats. Identities = 344/477 (72%), Positives = 398/477 (83%), Gaps = 5/477 (1%) Query: 3 NHTFLWHDYETFGAVPRRDRPSQFAAVRTDAELNEIGEPIMLYCKPAPDYLPDPVSCLIT 62 NHTFLWHDYETFGAVPRRDRPSQFAA+RTDAELNEIGEP+M+YCKPAPDYLP P +CLIT Sbjct: 2 NHTFLWHDYETFGAVPRRDRPSQFAAIRTDAELNEIGEPLMIYCKPAPDYLPSPEACLIT 61 Query: 63 GITPQHCLAHGVPEHEFAARIEQALGEPGTIGVGYNTIRFDDEVTRFMFWRNLIDPYARE 122 GITPQ CL G+PEH FAA+IE+A +PGTIGVGYNTIRFDDEVTRF+FWRNLIDPYARE Sbjct: 62 GITPQLCLERGIPEHAFAAQIEKAFSQPGTIGVGYNTIRFDDEVTRFLFWRNLIDPYARE 121 Query: 123 WANGCGRWDLLDVVRLTYALRPEGIQWPTKEDGSVSFKLEHLSKANGLVHEAAHDALSDV 182 W N CGRWDLLDVVRLTYALRP+GI+WP KEDG SFKLE L++ANGL+HE+AHDALSDV Sbjct: 122 WQNDCGRWDLLDVVRLTYALRPDGIEWPKKEDGKPSFKLEDLARANGLLHESAHDALSDV 181 Query: 183 RATIALARLIRQNNPRLFDFALALHKKDKAAAEIGLPA----AKPFLHVSGMFPVANGCL 238 RATIALARLIR+ P+LF+FA LHKKD+ A+E+GLPA A+PFLHVSGMFPV GCL Sbjct: 182 RATIALARLIRERQPKLFEFAFGLHKKDRVASELGLPAMRETARPFLHVSGMFPVERGCL 241 Query: 239 ALMWPLGMHPTNKNEVIAWDLGYDPSELAGMDAATVRERMFTKRDEMPEGMVRLPVKSIH 298 +MWPL HPTNKNE+IAWDL +DPSEL +D T+R R+FT+ ++PEG+VRLPVK IH Sbjct: 242 GVMWPLASHPTNKNELIAWDLAHDPSELRDLDVETLRLRLFTRTADLPEGVVRLPVKGIH 301 Query: 299 LNKSPMVVGSIKTLSAERAAQLNIDVDLALRHAEKAAALPDLGPLWREVYQREHEASPDV 358 LNKSPMVVG+++TL+ A + N+D+D ALRHA A LPD+ +W +VY R EA PDV Sbjct: 302 LNKSPMVVGNLRTLAPAMAERWNVDLDAALRHAAIARDLPDMSAIWSQVYARPKEAVPDV 361 Query: 359 DEDLYGGFIGNGDRRQLTQLRALPPQALAGASVAFDDMRLNEILFRYRARNFPETLSPEE 418 DEDLYGGF+GNGDRR+L QLRAL P+ LA FDD RL EILFRYRARN+PE LS EE Sbjct: 362 DEDLYGGFVGNGDRRRLNQLRALSPEELAKDRTGFDDGRLEEILFRYRARNWPELLSSEE 421 Query: 419 AQHWEEHRAARLFEGAGGARTVAQLFEQIDQLQEEADDERTQDILGALYDYAEMIAP 475 A+ WE RAARLF+G GGART+ LF ++D L E A DER ++ILGALY+YAE IAP Sbjct: 422 AERWEALRAARLFKGEGGARTIEMLFSEVDALSETA-DERGEEILGALYEYAEAIAP 477 >ref|YP_549751.1| exonuclease I [Polaromonas sp. JS666] gb|ABE44853.1| Exodeoxyribonuclease I subunit C [Polaromonas sp. JS666] Length = 480 Score = 711 bits (1836), Expect = 0.0, Method: Composition-based stats. Identities = 346/479 (72%), Positives = 395/479 (82%), Gaps = 5/479 (1%) Query: 1 MYNHTFLWHDYETFGAVPRRDRPSQFAAVRTDAELNEIGEPIMLYCKPAPDYLPDPVSCL 60 M HTFLWHDYETFG RRDRPSQFA +RTDAELNE+GEP+MLYC+PA DYLPDP SCL Sbjct: 1 MAPHTFLWHDYETFGLNTRRDRPSQFAGIRTDAELNEVGEPLMLYCQPANDYLPDPASCL 60 Query: 61 ITGITPQHCLAHGVPEHEFAARIEQALGEPGTIGVGYNTIRFDDEVTRFMFWRNLIDPYA 120 ITGITPQ CL G+PEH FAA+IEQ L EPGTIGVGYNTIRFDDEVTR++FWRNLIDPYA Sbjct: 61 ITGITPQLCLERGIPEHAFAAKIEQLLAEPGTIGVGYNTIRFDDEVTRYLFWRNLIDPYA 120 Query: 121 REWANGCGRWDLLDVVRLTYALRPEGIQWPTKEDGSVSFKLEHLSKANGLVHEAAHDALS 180 REW N CGRWDLLDVVR+ YALRPEGI WPTKEDG SFKLE L++ANGL+HEAAHDALS Sbjct: 121 REWQNDCGRWDLLDVVRMAYALRPEGIVWPTKEDGKPSFKLEDLARANGLLHEAAHDALS 180 Query: 181 DVRATIALARLIRQNNPRLFDFALALHKKDKAAAEIGLPA----AKPFLHVSGMFPVANG 236 DVRATIALARLIR+ P+LFDF L LHKKD+ AAE+GLPA A PFLHVSGMFP G Sbjct: 181 DVRATIALARLIRKAQPKLFDFCLGLHKKDRVAAELGLPASRQSATPFLHVSGMFPPERG 240 Query: 237 CLALMWPLGMHPTNKNEVIAWDLGYDPSELAGMDAATVRERMFTKRDEMPEGMVRLPVKS 296 CLA+MWPL HPTNKNE++AWDL +DPSEL +D AT+R+R+FT+ ++PEG++RLP+KS Sbjct: 241 CLAVMWPLATHPTNKNELLAWDLAHDPSELPLLDVATLRQRLFTRSADLPEGVLRLPLKS 300 Query: 297 IHLNKSPMVVGSIKTLSAERAAQLNIDVDLALRHAEKAAALPDLGPLWREVYQREHEASP 356 +HLNKSPMVV ++TL+ E A + +D+D ALR+AEKAA LPD+ +W EV+QR EA+P Sbjct: 301 VHLNKSPMVVRKLQTLTPEMAVKWGVDMDAALRNAEKAAGLPDMSAIWPEVFQRPKEAAP 360 Query: 357 DVDEDLYGGFIGNGDRRQLTQLRALPPQALAGASVAFDDMRLNEILFRYRARNFPETLSP 416 DVDEDLYGGF+GN DRR+L QLRAL P LA + FDD RL E+LFRYRARNF ETL+P Sbjct: 361 DVDEDLYGGFVGNADRRRLNQLRALSPAELAHSRTGFDDDRLQELLFRYRARNFAETLTP 420 Query: 417 EEAQHWEEHRAARLFEGAGGARTVAQLFEQIDQLQEEADDERTQDILGALYDYAEMIAP 475 EEA+ WE HRAARL EG GGAR V LF +ID L E DER Q ILGALYDYAE IAP Sbjct: 421 EEAERWEAHRAARLLEGEGGARNVDALFAEIDTLSETT-DERGQAILGALYDYAEAIAP 478 >ref|YP_001352252.1| exonuclease I [Janthinobacterium sp. Marseille] gb|ABR89104.1| exodeoxyribonuclease I [Janthinobacterium sp. Marseille] Length = 476 Score = 709 bits (1831), Expect = 0.0, Method: Composition-based stats. Identities = 339/476 (71%), Positives = 388/476 (81%), Gaps = 1/476 (0%) Query: 1 MYNHTFLWHDYETFGAVPRRDRPSQFAAVRTDAELNEIGEPIMLYCKPAPDYLPDPVSCL 60 M HTFLWHDYETFG PRRDRP+QFAA+RTDAELNEIGEPIMLYCKPA D+LPDP SCL Sbjct: 1 MSTHTFLWHDYETFGIQPRRDRPAQFAAIRTDAELNEIGEPIMLYCKPANDFLPDPQSCL 60 Query: 61 ITGITPQHCLAHGVPEHEFAARIEQALGEPGTIGVGYNTIRFDDEVTRFMFWRNLIDPYA 120 ITGITPQ CL GVPEHEFAA IE+AL + GTIGVGYNTIRFDDEVTRFMFWRNLIDPYA Sbjct: 61 ITGITPQTCLERGVPEHEFAAEIEKALSQTGTIGVGYNTIRFDDEVTRFMFWRNLIDPYA 120 Query: 121 REWANGCGRWDLLDVVRLTYALRPEGIQWPTKEDGSVSFKLEHLSKANGLVHEAAHDALS 180 REW N CGRWD+LDVVR YALRPEGI WP DG SF+LE L+ NG+ HEAAHDALS Sbjct: 121 REWQNSCGRWDILDVVRTAYALRPEGINWPKHPDGRPSFRLEQLTAENGIAHEAAHDALS 180 Query: 181 DVRATIALARLIRQNNPRLFDFALALHKKDKAAAEIGLPAAKPFLHVSGMFPVANGCLAL 240 DVRATIALARLIR+ P+LFDF L LHKKDK AAEIGLP +PFLH++GM P GC+A+ Sbjct: 181 DVRATIALARLIRERQPKLFDFCLGLHKKDKVAAEIGLPLRRPFLHITGMIPAERGCIAV 240 Query: 241 MWPLGMHPTNKNEVIAWDLGYDPSELAGMDAATVRERMFTKRDEMPEGMVRLPVKSIHLN 300 +WPL +HPTNKNEVI WDL DPSELA +DA T+R RMF+K D +PEG+ RLP+K+IHLN Sbjct: 241 VWPLAVHPTNKNEVIVWDLSVDPSELATLDAETIRMRMFSKADALPEGVSRLPIKTIHLN 300 Query: 301 KSPMVVGSIKTLSAERAAQLNIDVDLALRHAEKAAALPDLGPLWREVYQREHEASPDVDE 360 KSP+V+ ++KTLSAE Q ID+ ALRHAE AAA PD+ +W++V+ R EA+ DVDE Sbjct: 301 KSPIVINNLKTLSAEMTEQWGIDIPTALRHAEVAAAAPDMTAIWQDVFYRPQEAAADVDE 360 Query: 361 DLYGGFIGNGDRRQLTQLRALPPQALAGASVAFDDMRLNEILFRYRARNFPETLSPEEAQ 420 DLYGGF+GN DRR L +LRAL P+ALA A F D RL EI++RYRARNFP TL+ EE Q Sbjct: 361 DLYGGFVGNNDRRTLQELRALSPEALAQAKPGFSDPRLEEIVWRYRARNFPHTLNEEEQQ 420 Query: 421 HWEEHRAARLFEGAGGARTVAQLFEQIDQLQEEADDERTQDILGALYDYAEMIAPA 476 WE+HR ARLF+G GGART+ LF +IDQL E A DER ++ILGALYDYAE IAP+ Sbjct: 421 RWEDHRVARLFDGEGGARTIETLFAEIDQLSETA-DERGEEILGALYDYAEAIAPS 475