BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4524.p         (120 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777007.1| hypothetical protein Hsero_3621 [Herbaspiril...   220   5e-56
ref|YP_004732068.1| hypothetical protein SBG_3261 [Salmonella bo...    78   4e-13
ref|YP_004213849.1| hypothetical protein Rahaq_3128 [Rahnella sp...    73   1e-11
ref|YP_003198717.1| hypothetical protein Dret_1855 [Desulfohalob...    66   2e-09
gb|EGB61426.1| hypothetical protein ERJG_02691 [Escherichia coli...    61   7e-08

>ref|YP_003777007.1| hypothetical protein Hsero_3621 [Herbaspirillum seropedicae SmR1]
 gb|ADJ65099.1| hypothetical protein Hsero_3621 [Herbaspirillum seropedicae SmR1]
          Length = 138

 Score =  220 bits (561), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 119/120 (99%), Positives = 119/120 (99%)

Query: 1   MFEQIKIQRLSMSSIYKLLAVGTTFSLVPFSTLMGVLSLFGAQTITWDGKHLIGYDGLIA 60
           MFEQIKIQRLSMSSIYKLLAVGTTFSLVPFSTLMGVLSLFGAQTITWDGKHLIGYDGLIA
Sbjct: 19  MFEQIKIQRLSMSSIYKLLAVGTTFSLVPFSTLMGVLSLFGAQTITWDGKHLIGYDGLIA 78

Query: 61  SPFIGLFLSAFITLFMGTMCCIGLWLYSLWRPLSLKVEPVDNLDIDKLIRESEEAMATRD 120
           SPFIGLFLSAFITLFMGTMCCIGLWLYSLWRPLSLKVE VDNLDIDKLIRESEEAMATRD
Sbjct: 79  SPFIGLFLSAFITLFMGTMCCIGLWLYSLWRPLSLKVEAVDNLDIDKLIRESEEAMATRD 138


>ref|YP_004732068.1| hypothetical protein SBG_3261 [Salmonella bongori NCTC 12419]
 emb|CCC32312.1| putative inner membrane protein [Salmonella bongori NCTC 12419]
          Length = 104

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/94 (37%), Positives = 62/94 (65%)

Query: 4   QIKIQRLSMSSIYKLLAVGTTFSLVPFSTLMGVLSLFGAQTITWDGKHLIGYDGLIASPF 63
           Q++++R+    IY+L+ +G    +V FS + GV+ +FG   + W+ + + G   L  + F
Sbjct: 9   QVEVKRVKACIIYRLMLIGFGIPMVGFSFICGVMGIFGYDMVKWNNQTIHGLLALPTALF 68

Query: 64  IGLFLSAFITLFMGTMCCIGLWLYSLWRPLSLKV 97
            GLF+S  +T+F+G++ C+GLW+YS +RPL +KV
Sbjct: 69  SGLFVSVLMTVFLGSIACLGLWIYSRFRPLQVKV 102


>ref|YP_004213849.1| hypothetical protein Rahaq_3128 [Rahnella sp. Y9602]
 gb|ADW74722.1| hypothetical protein Rahaq_3128 [Rahnella sp. Y9602]
          Length = 107

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 59/93 (63%)

Query: 5   IKIQRLSMSSIYKLLAVGTTFSLVPFSTLMGVLSLFGAQTITWDGKHLIGYDGLIASPFI 64
           I+I++++  ++YKL++VG  F+ +P   LMGV+  FG   I  +G+++ G    I +P +
Sbjct: 9   IEIRKITAGTVYKLVSVGMLFAALPVGLLMGVMGAFGYDVILLNGEYVYGITAFITAPVL 68

Query: 65  GLFLSAFITLFMGTMCCIGLWLYSLWRPLSLKV 97
              +S   TLF GT  C+GLW+YS  + +++++
Sbjct: 69  ACLMSQVFTLFFGTFICLGLWIYSRIKRMNIRI 101


>ref|YP_003198717.1| hypothetical protein Dret_1855 [Desulfohalobium retbaense DSM
          5692]
 gb|ACV69139.1| hypothetical protein Dret_1855 [Desulfohalobium retbaense DSM
          5692]
          Length = 128

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/98 (35%), Positives = 58/98 (59%), Gaps = 8/98 (8%)

Query: 3  EQIKIQRLSMSSIYKLLAVGTTFSLVPFSTLMGVLSLFGAQTITWDGKHLIGYDGLIASP 62
          E +++ RL  +SI+KL+ +G+T S      + G L+L G   + W+G +L G  GL+A+P
Sbjct: 5  EAVEVLRLRGASIFKLVLLGSTVSWTALGLVFGALALAGFDVVQWNGDYLAGVRGLVAAP 64

Query: 63 FIGLFLSAFITLFMGTMCCIGLW----LYSLWRPLSLK 96
           I     A   L  G +C +G++    LY+L+RPL+L+
Sbjct: 65 MI----IALAGLLWGVVCAVGIYLGLRLYALFRPLTLE 98


>gb|EGB61426.1| hypothetical protein ERJG_02691 [Escherichia coli M863]
 gb|EGE62940.1| hypothetical protein ECSTEC7V_4235 [Escherichia coli STEC_7v]
          Length = 127

 Score = 60.8 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 36/92 (39%), Positives = 57/92 (61%)

Query: 5   IKIQRLSMSSIYKLLAVGTTFSLVPFSTLMGVLSLFGAQTITWDGKHLIGYDGLIASPFI 64
           ++I+R+  S IY+LL +G    +V +  + GVL +FG   + W+   + G   L A    
Sbjct: 33  VQIKRIKPSIIYRLLLIGLGTPMVIYGLVCGVLGMFGYDQVRWNDTVIHGLLALPAGLLA 92

Query: 65  GLFLSAFITLFMGTMCCIGLWLYSLWRPLSLK 96
           GL +S F+T+ +GT+ C GLWLYSL RPL+++
Sbjct: 93  GLSVSVFLTVVIGTIACFGLWLYSLVRPLTIE 124