BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4522.p (266 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777005.1| LytR/AlgR family two component response regu... 338 6e-91 ref|YP_004751810.1| response regulator receiver protein [Collimo... 278 4e-73 ref|YP_004127678.1| lyttr DNA-binding region protein [Alicycliph... 248 8e-64 ref|YP_004387298.1| LytTR family two component transcriptional r... 248 8e-64 ref|XP_002338680.1| predicted protein [Populus trichocarpa] >gi|... 240 1e-61 >ref|YP_003777005.1| LytR/AlgR family two component response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65097.1| LytR/AlgR family two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 268 Score = 338 bits (867), Expect = 6e-91, Method: Composition-based stats. Identities = 194/267 (72%), Positives = 226/267 (84%), Gaps = 3/267 (1%) Query: 3 APTALIAEDEPLLANALRQALARCWPDLPAPHLAANGDEALEQALALLPDVLFLDIKMPG 62 A +ALIAEDEPLLA AL+ L RCWP+L P LAANG +ALE AL LPDVLFLDI+MPG Sbjct: 2 AVSALIAEDEPLLARALQNTLQRCWPELETPRLAANGVQALEMALESLPDVLFLDIRMPG 61 Query: 63 RSGLEVAGELADEWPAGRPFPLIVFVTAYDDYALQAFERAAIDYLLKPVSQDRLAVTVAR 122 SGLEVA ELA++WP +PFPLIVFVTAYD++AL+AFERAAIDYLLKPV+++RL TV R Sbjct: 62 HSGLEVARELAEQWPQRQPFPLIVFVTAYDEHALEAFERAAIDYLLKPVNEERLGKTVQR 121 Query: 123 LQALLAQRAASDQDSHLERALAQLRAL---SAPAVEDAPPRLDYIRAAVGNKVKLIPVDE 179 L+ALLAQRAAS Q+ HLE+ALAQLR L +P P RL+ IRAAVGN+ +LIPV+E Sbjct: 122 LRALLAQRAASSQELHLEQALAQLRQLVSADSPVAAAPPARLEVIRAAVGNRTRLIPVEE 181 Query: 180 VIYFEATDKYVNVVSAEGSALIRTSLRELIPQLDGRQFWQIHRGTVVQVRQIQAALREES 239 VIYFEATDKYVNVV+A+G ALIRTSLRELIPQLD QFWQIHRGTVVQVR+++AA+R+E+ Sbjct: 182 VIYFEATDKYVNVVTADGQALIRTSLRELIPQLDPGQFWQIHRGTVVQVRKVEAAVRDEA 241 Query: 240 GKLFVTLRDRPEKLAVSRLFAHLFRQM 266 GKL + LR RPE+LAVSRLFA LFRQM Sbjct: 242 GKLSLQLRGRPERLAVSRLFAPLFRQM 268 >ref|YP_004751810.1| response regulator receiver protein [Collimonas fungivorans Ter331] gb|AEK60987.1| response regulator receiver protein [Collimonas fungivorans Ter331] Length = 264 Score = 278 bits (712), Expect = 4e-73, Method: Composition-based stats. Identities = 157/261 (60%), Positives = 193/261 (73%), Gaps = 5/261 (1%) Query: 6 ALIAEDEPLLANALRQALARCWPDLPAPHLAANGDEALEQALALLPDVLFLDIKMPGRSG 65 ALIAEDEP+LA AL+QAL R WP+L NG +EQ L PD+LFLDIKMPG++G Sbjct: 9 ALIAEDEPILAAALQQALQRLWPELQIIASVDNGQAVVEQTLRQRPDILFLDIKMPGKTG 68 Query: 66 LEVAGELADEWPAGRPFPLIVFVTAYDDYALQAFERAAIDYLLKPVSQDRLAVTVARLQA 125 LE A ELA+EWP FPLIVFVTAYD+YA+ AFE AA DY+LKP+S RL T+ARLQ Sbjct: 69 LEAAQELAEEWPENEAFPLIVFVTAYDEYAVSAFEHAAADYVLKPISDARLGKTIARLQQ 128 Query: 126 LLAQRAASDQDSHLERALAQLRALSAPAVEDAPPRLDYIRAAVGNKVKLIPVDEVIYFEA 185 L Q D + L+ + QLR++ P P L IRAAVGN++++IP+ +VIYFEA Sbjct: 129 RLQQNG--DGNGALDNLIGQLRSMQ-PKPSSEP--LTVIRAAVGNQIRMIPIGDVIYFEA 183 Query: 186 TDKYVNVVSAEGSALIRTSLRELIPQLDGRQFWQIHRGTVVQVRQIQAALREESGKLFVT 245 TDKY+NVV+AE +LIRTSL++L+PQLD RQFWQ+HRGT+V + IQ A R+ESGKL + Sbjct: 184 TDKYINVVTAEHESLIRTSLKDLLPQLDSRQFWQVHRGTIVNHQYIQLATRDESGKLSLK 243 Query: 246 LRDRPEKLAVSRLFAHLFRQM 266 LR R E LAVSR+FAHLFRQM Sbjct: 244 LRGRNESLAVSRVFAHLFRQM 264 >ref|YP_004127678.1| lyttr DNA-binding region protein [Alicycliphilus denitrificans BC] gb|ADV00791.1| LytTr DNA-binding region protein [Alicycliphilus denitrificans BC] Length = 268 Score = 248 bits (632), Expect = 8e-64, Method: Composition-based stats. Identities = 155/270 (57%), Positives = 189/270 (70%), Gaps = 11/270 (4%) Query: 4 PTALIAEDEPLLANALRQALARCWPDLPAPHLAANGDEALEQALALLPDVLFLDIKMPGR 63 PTALIAEDEPLLA AL+Q LAR WP L +G A+ +AL L+PDVLF DI+MPG+ Sbjct: 3 PTALIAEDEPLLAAALQQELARAWPGLAIAATVGDGLSAVREALRLMPDVLFFDIRMPGQ 62 Query: 64 SGLEVAGELADEWPAG-RPFPLIVFVTAYDDYALQAFERAAIDYLLKPVSQDRLAVTVAR 122 SGL+ A ELAD W G RPFP +VFVTAYD YA+QAFE A+DYLLKPV RL TV + Sbjct: 63 SGLDAAVELADAWDTGARPFPALVFVTAYDQYAVQAFEAQAVDYLLKPVQPGRLDRTVHK 122 Query: 123 LQALLAQRAASDQDSHLERALAQLRAL-SAPAV-----EDAPPRLDYIRAAVGNKVKLIP 176 L+ L QRA+ LE+ LAQLR L AP V A PRLD I+A G ++ +P Sbjct: 123 LRQALQQRASP----ALEQTLAQLRELVQAPGVGGAAPSPAAPRLDVIQAGSGAQIHFVP 178 Query: 177 VDEVIYFEATDKYVNVVSAEGSALIRTSLRELIPQLDGRQFWQIHRGTVVQVRQIQAALR 236 V EV+YFEA DKYV V++AE LIRT L+EL QLD FWQ+HRGT+V+ I AA+R Sbjct: 179 VAEVLYFEAADKYVRVLTAEHEYLIRTPLKELAAQLDPAAFWQVHRGTLVRADAIAAAVR 238 Query: 237 EESGKLFVTLRDRPEKLAVSRLFAHLFRQM 266 +E+G+L + LR RPE+LAVSRL+AH F+ M Sbjct: 239 DEAGRLHLQLRGRPERLAVSRLYAHRFKGM 268 >ref|YP_004387298.1| LytTR family two component transcriptional regulator [Alicycliphilus denitrificans K601] gb|AEB83782.1| two component transcriptional regulator, LytTR family [Alicycliphilus denitrificans K601] Length = 268 Score = 248 bits (632), Expect = 8e-64, Method: Composition-based stats. Identities = 154/270 (57%), Positives = 189/270 (70%), Gaps = 11/270 (4%) Query: 4 PTALIAEDEPLLANALRQALARCWPDLPAPHLAANGDEALEQALALLPDVLFLDIKMPGR 63 PTALIAEDEPLLA AL+Q LAR WP L +G A+ +AL L+PDV+F DI+MPG+ Sbjct: 3 PTALIAEDEPLLAAALQQELARAWPGLAIAATVGDGLSAVREALRLMPDVMFFDIRMPGQ 62 Query: 64 SGLEVAGELADEWPAG-RPFPLIVFVTAYDDYALQAFERAAIDYLLKPVSQDRLAVTVAR 122 SGL+ A ELAD W G RPFP +VFVTAYD YA+QAFE A+DYLLKPV RL TV + Sbjct: 63 SGLDAAVELADAWDTGARPFPALVFVTAYDQYAVQAFEAQAVDYLLKPVQPGRLDRTVHK 122 Query: 123 LQALLAQRAASDQDSHLERALAQLRAL-SAPAV-----EDAPPRLDYIRAAVGNKVKLIP 176 L+ L QRA+ LE+ LAQLR L AP V A PRLD I+A G ++ +P Sbjct: 123 LRQALQQRASP----ALEQTLAQLRELVQAPGVGGAAPSPAAPRLDVIQAGSGAQIHFVP 178 Query: 177 VDEVIYFEATDKYVNVVSAEGSALIRTSLRELIPQLDGRQFWQIHRGTVVQVRQIQAALR 236 V EV+YFEA DKYV V++AE LIRT L+EL QLD FWQ+HRGT+V+ I AA+R Sbjct: 179 VAEVLYFEAADKYVRVLTAEHEYLIRTPLKELAAQLDPAAFWQVHRGTLVRADAIAAAVR 238 Query: 237 EESGKLFVTLRDRPEKLAVSRLFAHLFRQM 266 +E+G+L + LR RPE+LAVSRL+AH F+ M Sbjct: 239 DEAGRLHLQLRGRPERLAVSRLYAHRFKGM 268 >ref|XP_002338680.1| predicted protein [Populus trichocarpa] gb|EEF10310.1| predicted protein [Populus trichocarpa] Length = 270 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 151/267 (56%), Positives = 194/267 (72%), Gaps = 3/267 (1%) Query: 3 APTALIAEDEPLLANALRQALARCWPDLPAPHLAANGDEALEQALALLPDVLFLDIKMPG 62 +P ALIAEDEPLLA LRQALAR WP+L + +G A QALAL PDVLF DI+MPG Sbjct: 4 SPRALIAEDEPLLAEDLRQALARAWPELQIAAMVGDGLSAARQALALQPDVLFFDIRMPG 63 Query: 63 RSGLEVAGELADEWPAGRPFPLIVFVTAYDDYALQAFERAAIDYLLKPVSQDRLAVTVAR 122 +SGLE A ELAD WP +PFP++VFVTAYD YA+ AFE A+DYLLKPV +RLA +V R Sbjct: 64 QSGLEAAAELADAWPEAQPFPILVFVTAYDQYAMDAFEAQAVDYLLKPVQPERLARSVQR 123 Query: 123 LQALLAQRAASDQDSHLERALAQLRAL---SAPAVEDAPPRLDYIRAAVGNKVKLIPVDE 179 L+ LLAQR + + L +AL QLR L +APA P L I+A VG +++++PV + Sbjct: 124 LRELLAQRTVAPAGAALAQALEQLRHLAGATAPAATATEPPLQMIQAGVGTQIQMVPVHD 183 Query: 180 VIYFEATDKYVNVVSAEGSALIRTSLRELIPQLDGRQFWQIHRGTVVQVRQIQAALREES 239 V+YFEA DKYV V++A L+RT L+EL+P+LD +FWQ+HRGTVV+ I A R+E+ Sbjct: 184 VVYFEAADKYVRVLTASHEYLVRTPLKELLPRLDAEEFWQVHRGTVVRAAAIANAQRDEA 243 Query: 240 GKLFVTLRDRPEKLAVSRLFAHLFRQM 266 G+L++ LR+R EKLAVSRL+A F+ M Sbjct: 244 GRLWLQLRERGEKLAVSRLYAQRFKAM 270