BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4521.p (381 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777004.1| transmembrane sensor histidine kinase-like A... 576 e-162 ref|YP_004751811.1| Autolysin sensor kinase [Collimonas fungivor... 259 4e-67 ref|YP_002981250.1| histidine kinase [Ralstonia pickettii 12D] >... 222 8e-56 ref|ZP_07676915.1| transmembrane sensor histidine kinase transcr... 219 5e-55 emb|CCA82338.1| putative sensor histidine kinase [blood disease ... 218 1e-54 >ref|YP_003777004.1| transmembrane sensor histidine kinase-like ATPase [Herbaspirillum seropedicae SmR1] gb|ADJ65096.1| transmembrane sensor histidine kinase-like ATPase protein [Herbaspirillum seropedicae SmR1] Length = 380 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 324/376 (86%), Positives = 349/376 (92%) Query: 1 MTQHDTSLPHRFIILLRELALSLLPTLVINLLCALAVTYLMRIGGTFYENLQVSMCIGLL 60 M+ DTS+ R I+LLRELA +LLPTL+INL+CALAVTYL+RIG FYENLQ+SMCIGLL Sbjct: 1 MSSPDTSVSPRIILLLRELARALLPTLLINLMCALAVTYLLRIGDGFYENLQISMCIGLL 60 Query: 61 AMLLINGTRLAIWGDGEPNKLGFLAIIAVMAPLAVLLGRILASLLMDQPILNMVPEQSDN 120 AMLLING RL IWGD EPNKLGF ++AV+APLAVLLGR+LA+LL+ QP++++VPE SDN Sbjct: 61 AMLLINGARLLIWGDDEPNKLGFAVLLAVLAPLAVLLGRVLATLLLGQPVVSLVPEHSDN 120 Query: 121 IIAVIVLTFLVCFGATVFYWNRQKMAALQAHASQVEKQAVQAQLQMLQAQIEPHMLFNTL 180 IIAV+VLTFLVCFGATVF+WNRQKMA LQAHAS+VEK AV AQLQ LQAQIEPHMLFNTL Sbjct: 121 IIAVMVLTFLVCFGATVFFWNRQKMATLQAHASEVEKHAVLAQLQTLQAQIEPHMLFNTL 180 Query: 181 ATLQSLISTDPLQAELMLNQLVHYLRTTLSASRADSTSLQKEFDLIKAYLGLMSLRMGLR 240 ATLQSLISTDPLQAELMLNQLV YLRTTLSASRADS SLQ+EFDLIKAYLGLMSLRMGLR Sbjct: 181 ATLQSLISTDPLQAELMLNQLVQYLRTTLSASRADSCSLQQEFDLIKAYLGLMSLRMGLR 240 Query: 241 LSYTLQLPEHLGKLRLAPMLLQPLVENAIKHGLEPKVAGGNCTVRAAVHNDMLVLSVLDT 300 LSYTLQLP HLG+LRLAPMLLQPLVENAIKHGLEPKV GGNCTVRAAVHNDMLVLSVLDT Sbjct: 241 LSYTLQLPSHLGRLRLAPMLLQPLVENAIKHGLEPKVDGGNCTVRAAVHNDMLVLSVLDT 300 Query: 301 GVGLPTSVSLNQPPAQKEPVIGMHFGLDNIRERLVTLYGPLAELIITHNVPAGAMAQITI 360 GVGLPTSVSLNQPPAQKEPVIGMHFGLDNIRERL TLYGPLAELIITHNVPAGAMAQITI Sbjct: 301 GVGLPTSVSLNQPPAQKEPVIGMHFGLDNIRERLSTLYGPLAELIITHNVPAGAMAQITI 360 Query: 361 PLKALKAAHRSSKNTR 376 PLK+LK+AHRS K R Sbjct: 361 PLKSLKSAHRSGKAGR 376 >ref|YP_004751811.1| Autolysin sensor kinase [Collimonas fungivorans Ter331] gb|AEK60988.1| Autolysin sensor kinase [Collimonas fungivorans Ter331] Length = 365 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 178/364 (48%), Positives = 236/364 (64%), Gaps = 12/364 (3%) Query: 6 TSLPHRFIILLRELALSLLPTLVINLLCALAVTYLMRIGGTFYENLQVSMCIGLLAMLLI 65 T+LP + L R L SLL + I+++CA+ VTY+MRI F+ NL S+CIG+LA+L I Sbjct: 5 TALPQNDLPLARRLLRSLLVNIGIDVICAVIVTYVMRINDLFWTNLVFSLCIGMLALLFI 64 Query: 66 NGTRLAIWGDGEPNKLGFLAIIAVMAPLAVLLGRILASLLMDQPILNMVPEQSDNIIAVI 125 R +K+ FLA V + LA+ LG LAS L+ P+ + + + ++ Sbjct: 65 QTGRYLFQRKATLHKVHFLAFTMVASGLALFLGIRLASWLLGLPVDDFSMYMNIGGLGLV 124 Query: 126 VLTFLVCFGATVFYWNRQKMAALQAHASQ-------VEKQAVQAQLQMLQAQIEPHMLFN 178 +LT VC GAT+F+WN +A L+ A+ +EKQA+QAQLQMLQAQIEPHMLFN Sbjct: 125 ILTMSVCIGATLFFWNLSTLAELRNQAATEKARSVGIEKQALQAQLQMLQAQIEPHMLFN 184 Query: 179 TLATLQSLISTDPLQAELMLNQLVHYLRTTLSASRADSTSLQKEFDLIKAYLGLMSLRMG 238 TLATLQSLI+ DP +A+ ML+QL+H+LR +LS+SR + T+L +EF L++AYL LMSLRMG Sbjct: 185 TLATLQSLIALDPPRAQQMLDQLIHFLRASLSSSRIEQTTLAQEFALMEAYLELMSLRMG 244 Query: 239 LRLSYTLQLPEHLGKLRLAPMLLQPLVENAIKHGLEPKVAGGNCTVRAAVHNDMLVLSVL 298 RLS+ LQLP L +APMLLQPLVENAIKHGLEPK+ GG V A+ +L+L V Sbjct: 245 NRLSFDLQLPAALRDTVIAPMLLQPLVENAIKHGLEPKIEGGRVEVVASRQGQLLLLDVS 304 Query: 299 DTGVGLPTSVSLNQPPAQKEPVIGMHFGLDNIRERLVTLYGPLAELIITHNVPAGAMAQI 358 DTG+GL L QP + H GL NI ERL LYG A L + +P G +AQ+ Sbjct: 305 DTGLGLTAWPPLQQPASHAS-----HIGLSNIHERLQALYGTQASLTLKPKLPHGVIAQL 359 Query: 359 TIPL 362 +P+ Sbjct: 360 QLPI 363 >ref|YP_002981250.1| histidine kinase [Ralstonia pickettii 12D] gb|ACS62578.1| histidine kinase [Ralstonia pickettii 12D] Length = 420 Score = 222 bits (566), Expect = 8e-56, Method: Composition-based stats. Identities = 138/370 (37%), Positives = 203/370 (54%), Gaps = 27/370 (7%) Query: 15 LLRELALSLLPTLVINLLCALAVTYLMRIGGTFYENLQVSMCIGLLAMLLINGTRLAIWG 74 L+R + +VIN L A + + +R TF+++ S IGL LI R +WG Sbjct: 34 LVRRWVIRYAVIIVINTLIAAVLAFGIRPEETFWKDFIFSQAIGLSMFSLIGIPRHVLWG 93 Query: 75 DGEPNKLGFLAIIAVMAPLAVLLGRILASLLMDQPILNMVPEQSDNIIAVIVLTFLVCFG 134 DG PNK F I+ + V LG+ +A ++ N P ++D++ ++ L G Sbjct: 94 DGPPNKKMFPWIVVGAVLIGVPLGQWIARTILCLNNPNAEPWRADSLRMSFIIAMLAALG 153 Query: 135 ATVFYWNRQKMAALQAHAS-------QVEKQAVQAQLQMLQAQIEPHMLFNTLATLQSLI 187 AT +YW+R K+AALQ A+ + EKQ V+AQL LQAQIEPH LFN+LA + LI Sbjct: 154 ATYYYWSRGKLAALQRQAALDALEREEAEKQVVRAQLMALQAQIEPHFLFNSLAHVDVLI 213 Query: 188 STDPLQAELMLNQLVHYLRTTLSASRADSTSLQKEFDLIKAYLGLMSLRMGLRLSYTLQL 247 + DP A +L L+ +LR++LS +RA+ +L +EF L++AYL + +LR G RL ++L L Sbjct: 214 ARDPAGARRLLQHLIGFLRSSLSHARAEQCTLAQEFALLRAYLDIQALRFGNRLRFSLAL 273 Query: 248 PEHLGKLRLAPMLLQPLVENAIKHGLEPKVAGGNCTVRAAV----HNDMLVLSVLDTGVG 303 + + + + PML+QPLVENA+ HG+EP GG + A + + LVL V DTGVG Sbjct: 274 DDAIANIVIPPMLIQPLVENAVVHGIEPAREGGEIALSARLAAGSEGERLVLEVRDTGVG 333 Query: 304 LPTSVSLNQPPAQKEPVIGMHFGLDNIRERLVTLYGPLAELIITHNVPAGAMAQITIPLK 363 + G GL ++RERL L+ A L IT VP G + +PL Sbjct: 334 F-----------GNDGTKGSGLGLTHVRERLSRLFDGDARLTITETVPHGVTIIVELPL- 381 Query: 364 ALKAAHRSSK 373 AH +++ Sbjct: 382 ----AHETAR 387 >ref|ZP_07676915.1| transmembrane sensor histidine kinase transcription regulator protein [Ralstonia sp. 5_7_47FAA] gb|EFP64918.1| transmembrane sensor histidine kinase transcription regulator protein [Ralstonia sp. 5_7_47FAA] Length = 389 Score = 219 bits (559), Expect = 5e-55, Method: Composition-based stats. Identities = 137/370 (37%), Positives = 203/370 (54%), Gaps = 27/370 (7%) Query: 15 LLRELALSLLPTLVINLLCALAVTYLMRIGGTFYENLQVSMCIGLLAMLLINGTRLAIWG 74 L+R + +VIN L A + + +R TF+++ S IGL LI R +WG Sbjct: 3 LVRRWVIRYAVIIVINTLIAAVLAFGIRPEETFWKDFIFSQAIGLSMFSLIGIPRHVLWG 62 Query: 75 DGEPNKLGFLAIIAVMAPLAVLLGRILASLLMDQPILNMVPEQSDNIIAVIVLTFLVCFG 134 DG PNK F I+ + V LG+ +A ++ N P ++D++ ++ L G Sbjct: 63 DGPPNKKMFPWIVVGAVLIGVPLGQWIARTILCLNNPNAEPWRADSLRMSFIIAMLAALG 122 Query: 135 ATVFYWNRQKMAALQAHAS-------QVEKQAVQAQLQMLQAQIEPHMLFNTLATLQSLI 187 AT +YW+R K+AALQ A+ + EKQ V+AQL LQAQIEPH LFN+LA + LI Sbjct: 123 ATYYYWSRGKLAALQRQAALDALEREEAEKQMVRAQLMALQAQIEPHFLFNSLAHVDVLI 182 Query: 188 STDPLQAELMLNQLVHYLRTTLSASRADSTSLQKEFDLIKAYLGLMSLRMGLRLSYTLQL 247 + DP A +L L+ +LR++LS +RA+ +L +EF L++AYL + +LR G RL ++L L Sbjct: 183 ARDPAGARRLLQHLIGFLRSSLSHARAEQCTLAQEFALLRAYLDIQALRFGNRLRFSLAL 242 Query: 248 PEHLGKLRLAPMLLQPLVENAIKHGLEPKVAGGNCTVRAAV----HNDMLVLSVLDTGVG 303 + + + + PML+QPLVENA+ HG+EP GG + A + + LVL V DTG+G Sbjct: 243 DDAIANIVIPPMLIQPLVENAVVHGIEPAREGGEIALSARLAAGSEGERLVLEVRDTGIG 302 Query: 304 LPTSVSLNQPPAQKEPVIGMHFGLDNIRERLVTLYGPLAELIITHNVPAGAMAQITIPLK 363 + G GL ++RERL L+ A L IT VP G + +PL Sbjct: 303 F-----------GNDGTKGSGLGLTHVRERLSRLFDGDARLTITETVPHGVTIIVELPL- 350 Query: 364 ALKAAHRSSK 373 AH +++ Sbjct: 351 ----AHETAR 356 >emb|CCA82338.1| putative sensor histidine kinase [blood disease bacterium R229] Length = 396 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 129/327 (39%), Positives = 183/327 (55%), Gaps = 25/327 (7%) Query: 46 TFYENLQVSMCIGLLAMLLINGTRLAIWGDGEPNKLGFLAIIAVMAPLAVLLGRILASLL 105 TF+ + S IGL LLI+ R +WG G+P + F I+ + V G+ +A L+ Sbjct: 47 TFWNDFVYSQAIGLSMWLLIDIPRHVLWGSGQPGRKVFPWIVVAAVLIGVPFGQWVARLI 106 Query: 106 M---DQPILNMVPEQSDNIIAVIVLTFLVCFGATVFYWNRQKMAALQAHAS-------QV 155 + DQP ++D++ ++ L GAT FYW+R K+AALQ A+ + Sbjct: 107 LCTGDQPW------RADSLRMSFIIAMLAALGATYFYWSRGKLAALQRQAALDALEREEA 160 Query: 156 EKQAVQAQLQMLQAQIEPHMLFNTLATLQSLISTDPLQAELMLNQLVHYLRTTLSASRAD 215 EKQ V+AQL LQAQIEPH +FN LA + LI+ DP A +L L+ +LRT+L+ +RA+ Sbjct: 161 EKQVVRAQLMALQAQIEPHFIFNVLAHVDVLIARDPAGARRLLQHLIGFLRTSLAHARAE 220 Query: 216 STSLQKEFDLIKAYLGLMSLRMGLRLSYTLQLPEHLGKLRLAPMLLQPLVENAIKHGLEP 275 +L +EF L++AYL + +LR G RL ++L L E + L + PML+QPLVENA+ HG+EP Sbjct: 221 QCTLAQEFALLRAYLDIQALRFGARLQFSLALDEAIASLVVPPMLIQPLVENAVVHGIEP 280 Query: 276 KVAGGNCTVRAAVHNDMLVLSVLDTGVGLPTSVSLNQPPAQKEPVIGMHFGLDNIRERLV 335 GG + A D L+L V DTGVG + P G GL ++RERL Sbjct: 281 SREGGTIALSARREGDRLLLKVCDTGVGFGRDAN---------PGKGSGLGLTHVRERLS 331 Query: 336 TLYGPLAELIITHNVPAGAMAQITIPL 362 L+ A L I VP G + +PL Sbjct: 332 RLFDADARLTIAETVPHGVTVTVELPL 358