BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4513.p (531 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776997.1| glutamate synthase [Herbaspirillum seropedic... 1040 0.0 ref|YP_004754076.1| ferredoxin-dependent glutamate synthase [Col... 885 0.0 ref|ZP_03267822.1| Glutamate synthase (NADPH) [Burkholderia sp. ... 853 0.0 ref|ZP_02882567.1| ferredoxin-dependent glutamate synthase [Burk... 851 0.0 ref|ZP_06843835.1| Glutamate synthase (NADPH) [Burkholderia sp. ... 842 0.0 >ref|YP_003776997.1| glutamate synthase [Herbaspirillum seropedicae SmR1] gb|ADJ65089.1| glutamate synthase (NADPH) protein [Herbaspirillum seropedicae SmR1] Length = 531 Score = 1040 bits (2690), Expect = 0.0, Method: Composition-based stats. Identities = 497/531 (93%), Positives = 514/531 (96%) Query: 1 MWANRYFVFWAVIALTLALVVLAATHGIGWGWPLIPLVLSVVGVHDLVQRRHAVLRNYPL 60 MWANRY FWA + LT L+ LAA+H +GWGW LIPL L+ VG+HDL+Q+RHAVLRNYP+ Sbjct: 1 MWANRYLAFWAALVLTAILLALAASHQLGWGWGLIPLALTAVGLHDLLQKRHAVLRNYPI 60 Query: 61 IGHFRFMFEAIRPELRQYFFEDEMDGRPFSRKKRSVVYQRAKADVDSRPFGTELDMQQAG 120 IGHFRFMFEAIRPELRQYFFEDEMDGRPFSRKKRS+VYQRAKA+VDSRPFGTELDMQQAG Sbjct: 61 IGHFRFMFEAIRPELRQYFFEDEMDGRPFSRKKRSIVYQRAKAEVDSRPFGTELDMQQAG 120 Query: 121 HEWIGHSLSPTKIASHDFRVVVGGDRAQPYSMSVFNVSAMSFGSLSANAIRALNQGAKKG 180 HEWIGHSLSPTKIASHDFRV+VG DRAQPYSMSVFNVSAMSFGSLSANAIRALNQGAKKG Sbjct: 121 HEWIGHSLSPTKIASHDFRVIVGADRAQPYSMSVFNVSAMSFGSLSANAIRALNQGAKKG 180 Query: 181 NFAHDTGEGSVSEYHREFGGDLVWQIASGYFGCRNADGSFNEEKFTAQAQSPQIKMIEVK 240 NFAHDTGEGSVSEYHREFGGDLVWQIASGYFGCRNADGSFN+EKFTAQAQSPQIKMIEVK Sbjct: 181 NFAHDTGEGSVSEYHREFGGDLVWQIASGYFGCRNADGSFNDEKFTAQAQSPQIKMIEVK 240 Query: 241 LSQGAKPGHGGVLPAAKITPEIAATRGIPMGVDCISPAVHSSFSTPVGLLEFIEKLRGLS 300 LSQGAKPGHGGVLPAAKITPEIAATRGIPMGVDCISPAVHSSFSTP+GLLEFIEKLRGLS Sbjct: 241 LSQGAKPGHGGVLPAAKITPEIAATRGIPMGVDCISPAVHSSFSTPIGLLEFIEKLRGLS 300 Query: 301 GGKPVGIKLCVGHPWEFFSIAKAMLKTGIVPDFITVDGSEGGTGAAPLEFVDHVGMPLQE 360 GGKPVGIKLCVGHPWEFF IAKAMLKT IVPDFITVDGSEGGTGAAPLEFVDHVGMPLQE Sbjct: 301 GGKPVGIKLCVGHPWEFFGIAKAMLKTDIVPDFITVDGSEGGTGAAPLEFVDHVGMPLQE 360 Query: 361 GLVMVHNTLTGIGLRDKVRIGASGKIITAFDVARTLALGADWCNSARGFMFALGCIQSQS 420 GLVMVHNTL GIGLRDKV+IGASGKIITAFDVARTLALGADWCNSARGFMFALGCIQSQS Sbjct: 361 GLVMVHNTLVGIGLRDKVKIGASGKIITAFDVARTLALGADWCNSARGFMFALGCIQSQS 420 Query: 421 CHTDRCPTGVATQNAQRARALVVPDKAERVYRFHQSTLHALQELVQAAGLPHTSALRPHH 480 CHTDRCPTGVATQNA RARALVVPDKAERV+RFHQSTLHALQELVQAAGLPHTSALRPHH Sbjct: 421 CHTDRCPTGVATQNADRARALVVPDKAERVFRFHQSTLHALQELVQAAGLPHTSALRPHH 480 Query: 481 IVRRINDHEIQLMSNVLKYLQPNDLLEGNYRYRVYEKFWPIARAESFHPEL 531 IVRRINDHEIQLMSNVLKYLQPNDLL+GNYRYRVYEKFWPIARAESFHPE Sbjct: 481 IVRRINDHEIQLMSNVLKYLQPNDLLDGNYRYRVYEKFWPIARAESFHPEF 531 >ref|YP_004754076.1| ferredoxin-dependent glutamate synthase [Collimonas fungivorans Ter331] gb|AEK63253.1| ferredoxin-dependent glutamate synthase [Collimonas fungivorans Ter331] Length = 538 Score = 885 bits (2287), Expect = 0.0, Method: Composition-based stats. Identities = 415/529 (78%), Positives = 472/529 (89%) Query: 1 MWANRYFVFWAVIALTLALVVLAATHGIGWGWPLIPLVLSVVGVHDLVQRRHAVLRNYPL 60 M +RY FWAV+ LTL L AA +GW W L+P +L+ +G+ D+ QR HA+LRNYPL Sbjct: 1 MRVSRYLSFWAVLLLTLLLAAGAAAGKMGWWWALLPALLTGLGIWDMNQRSHAILRNYPL 60 Query: 61 IGHFRFMFEAIRPELRQYFFEDEMDGRPFSRKKRSVVYQRAKADVDSRPFGTELDMQQAG 120 +GHFRF+FE IRPE+RQYFFE + DG PF+RK+RS+VYQRAK +VDSRPFGTELD++ G Sbjct: 61 MGHFRFLFEMIRPEMRQYFFESDNDGAPFTRKERSLVYQRAKGEVDSRPFGTELDVKLRG 120 Query: 121 HEWIGHSLSPTKIASHDFRVVVGGDRAQPYSMSVFNVSAMSFGSLSANAIRALNQGAKKG 180 +EW+GHSL+PT IASHDFRV VG +RAQPYSMSVFNVSAMSFG+LSANAIRALN+GAKKG Sbjct: 121 YEWVGHSLAPTIIASHDFRVTVGAERAQPYSMSVFNVSAMSFGALSANAIRALNRGAKKG 180 Query: 181 NFAHDTGEGSVSEYHREFGGDLVWQIASGYFGCRNADGSFNEEKFTAQAQSPQIKMIEVK 240 FAHDTGEGS+S YHREFGGDL+WQIASGYFGCRN DGSFNEEKF AQA +PQ+KMI VK Sbjct: 181 GFAHDTGEGSISPYHREFGGDLLWQIASGYFGCRNGDGSFNEEKFVAQATTPQVKMITVK 240 Query: 241 LSQGAKPGHGGVLPAAKITPEIAATRGIPMGVDCISPAVHSSFSTPVGLLEFIEKLRGLS 300 LSQGAKPGHGGVLPAAKITPEI+ATRG+PMGVDCISPA HSSF+ P+GLLEFI+KLR LS Sbjct: 241 LSQGAKPGHGGVLPAAKITPEISATRGVPMGVDCISPATHSSFTNPIGLLEFIQKLRTLS 300 Query: 301 GGKPVGIKLCVGHPWEFFSIAKAMLKTGIVPDFITVDGSEGGTGAAPLEFVDHVGMPLQE 360 G KPVG KLCVGHPWEFF I KAML+TGI+PDFI VDGSEGGTGAAPLEFVDHVGMPLQE Sbjct: 301 GDKPVGFKLCVGHPWEFFGIVKAMLQTGILPDFIVVDGSEGGTGAAPLEFVDHVGMPLQE 360 Query: 361 GLVMVHNTLTGIGLRDKVRIGASGKIITAFDVARTLALGADWCNSARGFMFALGCIQSQS 420 GL++VHNTL G GLRD+++IGASGK+ITAFD+ARTLA+GADWCNSARGFMF+LGCIQSQS Sbjct: 361 GLLLVHNTLLGAGLRDRIKIGASGKVITAFDLARTLAIGADWCNSARGFMFSLGCIQSQS 420 Query: 421 CHTDRCPTGVATQNAQRARALVVPDKAERVYRFHQSTLHALQELVQAAGLPHTSALRPHH 480 CHTDRCPTGVATQ+ R +ALVVPDKAERVYRFH+STLHALQELVQAAGLPH SALR HH Sbjct: 421 CHTDRCPTGVATQDVGRQKALVVPDKAERVYRFHESTLHALQELVQAAGLPHASALRAHH 480 Query: 481 IVRRINDHEIQLMSNVLKYLQPNDLLEGNYRYRVYEKFWPIARAESFHP 529 IVRR +DHE++LMS++L YLQP DLL YRY V+EK+WPI+RAESFHP Sbjct: 481 IVRRTSDHEVKLMSDLLHYLQPGDLLNQKYRYPVFEKYWPISRAESFHP 529 >ref|ZP_03267822.1| Glutamate synthase (NADPH) [Burkholderia sp. H160] gb|EEA00574.1| Glutamate synthase (NADPH) [Burkholderia sp. H160] Length = 536 Score = 853 bits (2203), Expect = 0.0, Method: Composition-based stats. Identities = 384/530 (72%), Positives = 454/530 (85%) Query: 1 MWANRYFVFWAVIALTLALVVLAATHGIGWGWPLIPLVLSVVGVHDLVQRRHAVLRNYPL 60 M++ RY W IAL LAA H + W W ++P+ L +GV DL Q+RHA+LRNYPL Sbjct: 1 MFSRRYLAMWCAIALFAICTTLAANHHLPWFWIIVPVALVALGVFDLTQQRHAILRNYPL 60 Query: 61 IGHFRFMFEAIRPELRQYFFEDEMDGRPFSRKKRSVVYQRAKADVDSRPFGTELDMQQAG 120 GH RF+FE IRPE+RQYF ED+ D +PFSR +RS+VYQRAK DVDSRP+GTELD++ Sbjct: 61 WGHLRFIFEFIRPEIRQYFVEDDTDEKPFSRAQRSIVYQRAKNDVDSRPYGTELDVKAVA 120 Query: 121 HEWIGHSLSPTKIASHDFRVVVGGDRAQPYSMSVFNVSAMSFGSLSANAIRALNQGAKKG 180 HEWI HSL+PT + HDFR+VVG DRAQPYSMS+FNVSAMSFGSLSANAI ALN GAKKG Sbjct: 121 HEWISHSLAPTTLDGHDFRIVVGSDRAQPYSMSIFNVSAMSFGSLSANAIMALNLGAKKG 180 Query: 181 NFAHDTGEGSVSEYHREFGGDLVWQIASGYFGCRNADGSFNEEKFTAQAQSPQIKMIEVK 240 NFAHDTGEGS+S+YHRE GGD++W+IASGYFGCRN DG+FN EKF QA PQ+KMIEVK Sbjct: 181 NFAHDTGEGSMSKYHREHGGDIIWEIASGYFGCRNDDGTFNAEKFAKQAAEPQVKMIEVK 240 Query: 241 LSQGAKPGHGGVLPAAKITPEIAATRGIPMGVDCISPAVHSSFSTPVGLLEFIEKLRGLS 300 LSQGAKPGHGGVLPAAKITPEIA TRG+PMG DCISPA HS FSTP LLEF+E+LR LS Sbjct: 241 LSQGAKPGHGGVLPAAKITPEIAETRGVPMGRDCISPATHSEFSTPRELLEFVERLRTLS 300 Query: 301 GGKPVGIKLCVGHPWEFFSIAKAMLKTGIVPDFITVDGSEGGTGAAPLEFVDHVGMPLQE 360 GGKP G KLC+GHPWEFF IAKAML+TGI+PDFI VDG+EGGTGAAPLEF DH+G+PLQE Sbjct: 301 GGKPTGFKLCIGHPWEFFGIAKAMLETGILPDFIVVDGAEGGTGAAPLEFTDHIGVPLQE 360 Query: 361 GLVMVHNTLTGIGLRDKVRIGASGKIITAFDVARTLALGADWCNSARGFMFALGCIQSQS 420 GL++VHNTL GIGLR ++RIGASGK+ITAFD+A+TLA+GADW N+ARGFMFA+GCIQ+Q+ Sbjct: 361 GLLLVHNTLVGIGLRQRIRIGASGKMITAFDIAKTLAIGADWVNAARGFMFAVGCIQAQT 420 Query: 421 CHTDRCPTGVATQNAQRARALVVPDKAERVYRFHQSTLHALQELVQAAGLPHTSALRPHH 480 CHT RCPTGVATQ+ R RALVVPDKA+RV+ FH +TLHALQE++QAAGL H + LR HH Sbjct: 421 CHTGRCPTGVATQDPVRQRALVVPDKADRVFNFHHNTLHALQEIIQAAGLGHPAELRAHH 480 Query: 481 IVRRINDHEIQLMSNVLKYLQPNDLLEGNYRYRVYEKFWPIARAESFHPE 530 IVRR++ HE++LMS++LKYL+PNDLL GNYRY +YEK+WPIA+++SF P+ Sbjct: 481 IVRRVSSHEVRLMSDLLKYLEPNDLLNGNYRYTLYEKYWPIAQSDSFSPK 530 >ref|ZP_02882567.1| ferredoxin-dependent glutamate synthase [Burkholderia graminis C4D1M] gb|EDT11770.1| ferredoxin-dependent glutamate synthase [Burkholderia graminis C4D1M] Length = 536 Score = 851 bits (2199), Expect = 0.0, Method: Composition-based stats. Identities = 383/531 (72%), Positives = 457/531 (86%) Query: 1 MWANRYFVFWAVIALTLALVVLAATHGIGWGWPLIPLVLSVVGVHDLVQRRHAVLRNYPL 60 M++ RY W+ IAL LAAT + W W ++PL L +G+ DL Q+RHA+LRNYPL Sbjct: 1 MFSRRYLAMWSAIALLGLSTALAATQHVSWLWIVVPLALVALGIFDLTQQRHAILRNYPL 60 Query: 61 IGHFRFMFEAIRPELRQYFFEDEMDGRPFSRKKRSVVYQRAKADVDSRPFGTELDMQQAG 120 GHFRF+FE IRPE+RQYF E++ D +PFSR +RS+VYQRAK DVDSRP+GTELD++ Sbjct: 61 WGHFRFLFEFIRPEIRQYFVENDTDEKPFSRAQRSIVYQRAKNDVDSRPYGTELDVKAVA 120 Query: 121 HEWIGHSLSPTKIASHDFRVVVGGDRAQPYSMSVFNVSAMSFGSLSANAIRALNQGAKKG 180 HEWI HSL+PT + SHDFR+VVG DRAQPYSMS+FNVSAMSFGSLSANAI ALN GAKKG Sbjct: 121 HEWISHSLAPTTLDSHDFRIVVGADRAQPYSMSIFNVSAMSFGSLSANAIMALNLGAKKG 180 Query: 181 NFAHDTGEGSVSEYHREFGGDLVWQIASGYFGCRNADGSFNEEKFTAQAQSPQIKMIEVK 240 NFAHDTGEGS+S+YHRE GGD++W+IASGYFGCRN DG+F+ +KF QA PQ+KMIEVK Sbjct: 181 NFAHDTGEGSMSKYHREHGGDIIWEIASGYFGCRNDDGTFSADKFAKQAAEPQVKMIEVK 240 Query: 241 LSQGAKPGHGGVLPAAKITPEIAATRGIPMGVDCISPAVHSSFSTPVGLLEFIEKLRGLS 300 LSQGAKPGHGGVLPAAKITPEIA TRG+PMG DCISPA HS FSTP GLLEF+++LR LS Sbjct: 241 LSQGAKPGHGGVLPAAKITPEIAETRGVPMGRDCISPATHSEFSTPRGLLEFVDRLRTLS 300 Query: 301 GGKPVGIKLCVGHPWEFFSIAKAMLKTGIVPDFITVDGSEGGTGAAPLEFVDHVGMPLQE 360 GGKP G KLC+GHPWEFF IAKAML+TGI+PDFI VDG+EGGTGAAPLEF DHVG+PLQE Sbjct: 301 GGKPTGFKLCIGHPWEFFGIAKAMLETGILPDFIVVDGAEGGTGAAPLEFTDHVGVPLQE 360 Query: 361 GLVMVHNTLTGIGLRDKVRIGASGKIITAFDVARTLALGADWCNSARGFMFALGCIQSQS 420 GL++VHNTL GIGLR ++RIGASGK+ITAFD+ +TLA+GADW N+ARGFMFA+GCIQ+Q+ Sbjct: 361 GLLLVHNTLVGIGLRQRIRIGASGKMITAFDITKTLAIGADWVNAARGFMFAVGCIQAQT 420 Query: 421 CHTDRCPTGVATQNAQRARALVVPDKAERVYRFHQSTLHALQELVQAAGLPHTSALRPHH 480 CHT RCPTGVATQ+ R RALVVPDKA+RV+ FH +TLHAL+E+VQAAGL H + LR HH Sbjct: 421 CHTGRCPTGVATQDPVRQRALVVPDKADRVFSFHHNTLHALKEIVQAAGLKHPAELRAHH 480 Query: 481 IVRRINDHEIQLMSNVLKYLQPNDLLEGNYRYRVYEKFWPIARAESFHPEL 531 IVRR++ HE+QLMS +LKYL+PNDLL GNYRY +YEK+WP+A+++SF P++ Sbjct: 481 IVRRVSSHEVQLMSELLKYLEPNDLLNGNYRYSLYEKWWPVAQSDSFSPKV 531 >ref|ZP_06843835.1| Glutamate synthase (NADPH) [Burkholderia sp. Ch1-1] gb|EFG68530.1| Glutamate synthase (NADPH) [Burkholderia sp. Ch1-1] Length = 536 Score = 842 bits (2174), Expect = 0.0, Method: Composition-based stats. Identities = 382/531 (71%), Positives = 454/531 (85%) Query: 1 MWANRYFVFWAVIALTLALVVLAATHGIGWGWPLIPLVLSVVGVHDLVQRRHAVLRNYPL 60 M++ RY W AL AATH I W W ++PL L +G+ DL Q+RHA+LRNYPL Sbjct: 1 MFSRRYLAMWCAAALFAVCAAFAATHHISWFWIIVPLALVALGLFDLTQQRHAILRNYPL 60 Query: 61 IGHFRFMFEAIRPELRQYFFEDEMDGRPFSRKKRSVVYQRAKADVDSRPFGTELDMQQAG 120 GHFRF+FE IRPE+RQYF E + D +PFSR +RS+VYQRAK DVDSRP+GTELD++ Sbjct: 61 WGHFRFLFEFIRPEIRQYFVEGDTDEKPFSRAQRSIVYQRAKNDVDSRPYGTELDVKAVA 120 Query: 121 HEWIGHSLSPTKIASHDFRVVVGGDRAQPYSMSVFNVSAMSFGSLSANAIRALNQGAKKG 180 HEWI HSL+PT++ SHDFR+VVG DRAQPYSMS+FNVSAMSFGSLSANAI ALN GAKKG Sbjct: 121 HEWISHSLAPTRLDSHDFRIVVGPDRAQPYSMSIFNVSAMSFGSLSANAIMALNLGAKKG 180 Query: 181 NFAHDTGEGSVSEYHREFGGDLVWQIASGYFGCRNADGSFNEEKFTAQAQSPQIKMIEVK 240 NFAHDTGEGS+S+YHRE GGD++W+IASGYFGCRN DG+F+ EKF QA PQ+KMIEVK Sbjct: 181 NFAHDTGEGSMSKYHREHGGDIIWEIASGYFGCRNEDGTFSAEKFAKQAAEPQVKMIEVK 240 Query: 241 LSQGAKPGHGGVLPAAKITPEIAATRGIPMGVDCISPAVHSSFSTPVGLLEFIEKLRGLS 300 LSQGAKPGHGGVLPAAKITPEIA TRG+PMG DCISPA HS FSTP GLLEF+++LR LS Sbjct: 241 LSQGAKPGHGGVLPAAKITPEIAETRGVPMGRDCISPATHSEFSTPRGLLEFVDRLRTLS 300 Query: 301 GGKPVGIKLCVGHPWEFFSIAKAMLKTGIVPDFITVDGSEGGTGAAPLEFVDHVGMPLQE 360 GGKP G KLC+GHPWEFF IAKAML+TGI+PDFI VDG+EGGTGAAPLEF DHVG+PLQE Sbjct: 301 GGKPTGFKLCIGHPWEFFGIAKAMLETGILPDFIVVDGAEGGTGAAPLEFTDHVGVPLQE 360 Query: 361 GLVMVHNTLTGIGLRDKVRIGASGKIITAFDVARTLALGADWCNSARGFMFALGCIQSQS 420 GL++VHNTL GIGLR ++RIGASGK+ITAFD+ +TLA+GADW N+ARGFMFA+GCIQ+Q+ Sbjct: 361 GLLLVHNTLVGIGLRQRIRIGASGKMITAFDITKTLAIGADWVNAARGFMFAVGCIQAQT 420 Query: 421 CHTDRCPTGVATQNAQRARALVVPDKAERVYRFHQSTLHALQELVQAAGLPHTSALRPHH 480 CHT RCPTGVATQ+ R RALVVPDKA+RV+ FH +TLHAL+E++QAAGL H + LR HH Sbjct: 421 CHTGRCPTGVATQDPVRQRALVVPDKADRVFNFHHNTLHALKEIIQAAGLKHPAELRAHH 480 Query: 481 IVRRINDHEIQLMSNVLKYLQPNDLLEGNYRYRVYEKFWPIARAESFHPEL 531 IVRR++ HE+QLMS +LKYL PNDLL GNYRY ++EK+WP+A+++SF P++ Sbjct: 481 IVRRVSSHEVQLMSELLKYLDPNDLLNGNYRYSLFEKYWPVAQSDSFSPKV 531