BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4509.p (185 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776992.1| hypothetical protein Hsero_3606 [Herbaspiril... 305 3e-81 ref|YP_004754092.1| hypothetical protein CFU_3445 [Collimonas fu... 229 2e-58 ref|YP_001354187.1| hypothetical protein mma_2497 [Janthinobacte... 223 1e-56 sp|A6T0Z0|RIMP_JANMA RecName: Full=Ribosome maturation factor rimP 220 6e-56 ref|ZP_08276236.1| clustered with transcription termination prot... 220 8e-56 >ref|YP_003776992.1| hypothetical protein Hsero_3606 [Herbaspirillum seropedicae SmR1] gb|ADJ65084.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 164 Score = 305 bits (780), Expect = 3e-81, Method: Composition-based stats. Identities = 160/164 (97%), Positives = 164/164 (100%) Query: 22 LQLLELIESTLAGLGYELVEFEKAPRGLVRVFIDFPFDPEAEEARSITVEDCEKATHQLL 81 +QLLELIESTL+GLGYELVEFEKAPRGLVRVFIDFPFDPEAEEARSITVEDCEKATHQLL Sbjct: 1 MQLLELIESTLSGLGYELVEFEKAPRGLVRVFIDFPFDPEAEEARSITVEDCEKATHQLL 60 Query: 82 HVFTVENVLYERLEVSSPGLDRPLKKFTDFVRFVDCEAVVKLRVPLPGTSNRKTYEGVLR 141 HVFTVENVLYERLEVSSPGLDRPLKKF+DFVRFVDCEAV+KLRVPLPGTSNRKTYEGVLR Sbjct: 61 HVFTVENVLYERLEVSSPGLDRPLKKFSDFVRFVDCEAVIKLRVPLPGTSNRKTYEGVLR 120 Query: 142 EPEGEELVLEFEANDGSAAVLNFTLADVDKAHLVPQVDFRSRKG 185 EPEGEELVLEFEANDGSAAVLNFTLADVDKAHLVPQVDFRSRKG Sbjct: 121 EPEGEELVLEFEANDGSAAVLNFTLADVDKAHLVPQVDFRSRKG 164 >ref|YP_004754092.1| hypothetical protein CFU_3445 [Collimonas fungivorans Ter331] gb|AEK63269.1| hypothetical protein CFU_3445 [Collimonas fungivorans Ter331] Length = 161 Score = 229 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 119/164 (72%), Positives = 139/164 (84%), Gaps = 3/164 (1%) Query: 22 LQLLELIESTLAGLGYELVEFEKAPRGLVRVFIDFPFDPEAEEARSITVEDCEKATHQLL 81 +QLLELIE+T+ G+GYELVEFEKA RG++RV+IDF PE E ITVEDCEK THQLL Sbjct: 1 MQLLELIETTVVGMGYELVEFEKAARGVLRVYIDFT--PENAEQGQITVEDCEKVTHQLL 58 Query: 82 HVFTVENVLYERLEVSSPGLDRPLKKFTDFVRFVDCEAVVKLRVPLPGTSNRKTYEGVLR 141 HV TVENV+YERLEVSSPGLDRPLKK D+VRF EA+VKLRVP+PG ++RK+++GVL Sbjct: 59 HVLTVENVVYERLEVSSPGLDRPLKKLADYVRFAGKEAIVKLRVPMPGAAHRKSFQGVLG 118 Query: 142 EPEGEELVLEFEANDGSAAVLNFTLADVDKAHLVPQVDFRSRKG 185 EP+GE L +EFE DGS A+L+FTLADVDKAHLVPQVDFRSRK Sbjct: 119 EPDGENLKIEFETKDGS-ALLDFTLADVDKAHLVPQVDFRSRKA 161 >ref|YP_001354187.1| hypothetical protein mma_2497 [Janthinobacterium sp. Marseille] gb|ABR90282.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 170 Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 116/166 (69%), Positives = 134/166 (80%), Gaps = 3/166 (1%) Query: 20 IVLQLLELIESTLAGLGYELVEFEKAPRGLVRVFIDFPFDPEAEEARSITVEDCEKATHQ 79 I+LQL LIE T+ G+GYELV FE+A RGLVRVFIDF PE + +ITVEDCEK THQ Sbjct: 8 ILLQLSALIEKTVVGMGYELVNFEQAARGLVRVFIDF--TPEDADKGAITVEDCEKVTHQ 65 Query: 80 LLHVFTVENVLYERLEVSSPGLDRPLKKFTDFVRFVDCEAVVKLRVPLPGTSNRKTYEGV 139 LLHV TVEN YERLEVSSPGLDRPLKK +D+VRF EA+VKLR+P+P +NRK+++G+ Sbjct: 66 LLHVLTVENANYERLEVSSPGLDRPLKKLSDYVRFAGAEALVKLRMPMPNAANRKSFQGI 125 Query: 140 LREPEGEELVLEFEANDGSAAVLNFTLADVDKAHLVPQVDFRSRKG 185 L+EP GE L LEFE NDG A L FTLADVDKAHLVPQV+FRSRK Sbjct: 126 LQEPVGETLALEFEGNDGPAK-LEFTLADVDKAHLVPQVNFRSRKA 170 >sp|A6T0Z0|RIMP_JANMA RecName: Full=Ribosome maturation factor rimP Length = 161 Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats. Identities = 114/164 (69%), Positives = 132/164 (80%), Gaps = 3/164 (1%) Query: 22 LQLLELIESTLAGLGYELVEFEKAPRGLVRVFIDFPFDPEAEEARSITVEDCEKATHQLL 81 +QL LIE T+ G+GYELV FE+A RGLVRVFIDF PE + +ITVEDCEK THQLL Sbjct: 1 MQLSALIEKTVVGMGYELVNFEQAARGLVRVFIDF--TPEDADKGAITVEDCEKVTHQLL 58 Query: 82 HVFTVENVLYERLEVSSPGLDRPLKKFTDFVRFVDCEAVVKLRVPLPGTSNRKTYEGVLR 141 HV TVEN YERLEVSSPGLDRPLKK +D+VRF EA+VKLR+P+P +NRK+++G+L+ Sbjct: 59 HVLTVENANYERLEVSSPGLDRPLKKLSDYVRFAGAEALVKLRMPMPNAANRKSFQGILQ 118 Query: 142 EPEGEELVLEFEANDGSAAVLNFTLADVDKAHLVPQVDFRSRKG 185 EP GE L LEFE NDG A L FTLADVDKAHLVPQV+FRSRK Sbjct: 119 EPVGETLALEFEGNDGPAK-LEFTLADVDKAHLVPQVNFRSRKA 161 >ref|ZP_08276236.1| clustered with transcription termination protein NusA [Oxalobacteraceae bacterium IMCC9480] gb|EGF30294.1| clustered with transcription termination protein NusA [Oxalobacteraceae bacterium IMCC9480] Length = 161 Score = 220 bits (560), Expect = 8e-56, Method: Composition-based stats. Identities = 112/164 (68%), Positives = 136/164 (82%), Gaps = 3/164 (1%) Query: 22 LQLLELIESTLAGLGYELVEFEKAPRGLVRVFIDFPFDPEAEEARSITVEDCEKATHQLL 81 +QLLELIE T+ G+ YELV+FE+A RGL+RV+IDFP PE E ITVEDCEK THQLL Sbjct: 1 MQLLELIEKTVVGMEYELVDFEQAARGLLRVYIDFP--PEQAERGMITVEDCEKVTHQLL 58 Query: 82 HVFTVENVLYERLEVSSPGLDRPLKKFTDFVRFVDCEAVVKLRVPLPGTSNRKTYEGVLR 141 HV TVEN +YERLEVSSPGLDRPLKK D++RF EA+VKLR+P+PG +NRK+++G+L Sbjct: 59 HVLTVENAVYERLEVSSPGLDRPLKKLADYLRFAGMEAIVKLRMPMPGAANRKSFQGILH 118 Query: 142 EPEGEELVLEFEANDGSAAVLNFTLADVDKAHLVPQVDFRSRKG 185 PEG+++ LEFE +GS A+L FTLADVDKAHLVP+VDFRSRK Sbjct: 119 APEGDQIKLEFEGKEGS-AMLEFTLADVDKAHLVPKVDFRSRKA 161