BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4508.p (519 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776991.1| transcription elongation factor protein [Her... 879 0.0 ref|YP_004754091.1| transcription termination protein NusA [Coll... 827 0.0 ref|YP_001354186.1| N utilization substance protein A [Janthinob... 820 0.0 ref|YP_001100686.1| transcription pausing; L factor [Herminiimon... 813 0.0 ref|ZP_08276237.1| Transcription termination protein NusA [Oxalo... 804 0.0 >ref|YP_003776991.1| transcription elongation factor protein [Herbaspirillum seropedicae SmR1] gb|ADJ65083.1| transcription elongation factor protein [Herbaspirillum seropedicae SmR1] Length = 519 Score = 879 bits (2271), Expect = 0.0, Method: Composition-based stats. Identities = 515/519 (99%), Positives = 517/519 (99%) Query: 1 MSREILLLVDALAREKNVDKEVVFGALEHALAQATKKRYEGEVDIRVSIDRESGEFESFR 60 MSREILLLVDALAREKNVDKEVVFGALEHALAQATKKRYEGEVDIRVSIDRESGEFESFR Sbjct: 1 MSREILLLVDALAREKNVDKEVVFGALEHALAQATKKRYEGEVDIRVSIDRESGEFESFR 60 Query: 61 RWHVVPDEAGLQLPDQEILLFEAKDQFPDIEVDEYIEDPIESVEFGRRFAQDTKQVVLQR 120 RWHVVPDEAGLQLPDQE+LLFEAK+QFPDIEVDEYIEDPIESVEFGRRFAQDTKQVVLQR Sbjct: 61 RWHVVPDEAGLQLPDQEVLLFEAKEQFPDIEVDEYIEDPIESVEFGRRFAQDTKQVVLQR 120 Query: 121 IRDAEREQILADFLARGDALVTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDR 180 IRDAEREQILADFLARGDALVTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDR Sbjct: 121 IRDAEREQILADFLARGDALVTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDR 180 Query: 181 VRAYILRVDRGARGPQVILSRTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAV 240 VRAYILRVDR ARGPQVILSRTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAV Sbjct: 181 VRAYILRVDRSARGPQVILSRTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAV 240 Query: 241 YTADKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVV 300 YTADKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVV Sbjct: 241 YTADKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVV 300 Query: 301 DEEKHAMDVVVDEENLAIAIGRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTL 360 DEEKHAMDVVVDEENLAIAIGRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTL Sbjct: 301 DEEKHAMDVVVDEENLAIAIGRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTL 360 Query: 361 FMEKLDVDQEVADILVEEGFSTLEEIAYVPITEMLEIESFDEETVNELRNRARDALVTEA 420 FMEKLDVDQEVADILVEEGFSTLEEIAYVPI EMLEIESFDEETVNELRNRARDALVTEA Sbjct: 361 FMEKLDVDQEVADILVEEGFSTLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEA 420 Query: 421 IASEEGLEGMEEELINFEGLDRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSERARQ 480 IASEEGLEGMEEELINFEGLDRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSERARQ Sbjct: 421 IASEEGLEGMEEELINFEGLDRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSERARQ 480 Query: 481 LIENAFEDVTDDEMKLIDSKYDERAKALQAKAWSAVEGR 519 LIENAFEDVTDDEMKLIDSKYDERAKALQAKAWSAVEGR Sbjct: 481 LIENAFEDVTDDEMKLIDSKYDERAKALQAKAWSAVEGR 519 >ref|YP_004754091.1| transcription termination protein NusA [Collimonas fungivorans Ter331] gb|AEK63268.1| Transcription termination protein NusA [Collimonas fungivorans Ter331] Length = 519 Score = 827 bits (2136), Expect = 0.0, Method: Composition-based stats. Identities = 465/519 (89%), Positives = 496/519 (95%) Query: 1 MSREILLLVDALAREKNVDKEVVFGALEHALAQATKKRYEGEVDIRVSIDRESGEFESFR 60 MSREILLLVDALA EKNVD++VVFGALEHAL QATKKRYEG+VDIRV+IDRE+GEFESFR Sbjct: 1 MSREILLLVDALAHEKNVDRDVVFGALEHALGQATKKRYEGDVDIRVTIDRETGEFESFR 60 Query: 61 RWHVVPDEAGLQLPDQEILLFEAKDQFPDIEVDEYIEDPIESVEFGRRFAQDTKQVVLQR 120 RWHVVPDEAGLQLPDQEILLFEAK+Q D+EVD++IE+PIESV+FGRRFAQDTKQVVLQR Sbjct: 61 RWHVVPDEAGLQLPDQEILLFEAKEQIEDVEVDDHIEEPIESVDFGRRFAQDTKQVVLQR 120 Query: 121 IRDAEREQILADFLARGDALVTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDR 180 IRDAEREQILADFL RGD+LVTGTIKRMERGDAI+ESGKIEARLPRDQ IPKENLRIGDR Sbjct: 121 IRDAEREQILADFLERGDSLVTGTIKRMERGDAIVESGKIEARLPRDQTIPKENLRIGDR 180 Query: 181 VRAYILRVDRGARGPQVILSRTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAV 240 VRA+ILR+DR ARGPQVILSRTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAV Sbjct: 181 VRAFILRIDRNARGPQVILSRTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAV 240 Query: 241 YTADKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVV 300 +TADKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANV+SIVV Sbjct: 241 FTADKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVV 300 Query: 301 DEEKHAMDVVVDEENLAIAIGRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTL 360 DEEKHAMDVVVDEENLAIAIGRGGQNVRLAAELT WQINIMTAEESADKSA ETA IR L Sbjct: 301 DEEKHAMDVVVDEENLAIAIGRGGQNVRLAAELTGWQINIMTAEESADKSAVETAAIRAL 360 Query: 361 FMEKLDVDQEVADILVEEGFSTLEEIAYVPITEMLEIESFDEETVNELRNRARDALVTEA 420 FMEKLDVDQEVADILVEEGF++LEEIAYVPITEMLEI+SFDE+TVNELRNRARDALVTEA Sbjct: 361 FMEKLDVDQEVADILVEEGFASLEEIAYVPITEMLEIDSFDEDTVNELRNRARDALVTEA 420 Query: 421 IASEEGLEGMEEELINFEGLDRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSERARQ 480 IASEEGLEGME+ L+NFEG+DRV AGKLGLAGVKTL AFA LAYDEFGAILAL ++RAR Sbjct: 421 IASEEGLEGMEDALVNFEGMDRVTAGKLGLAGVKTLAAFAALAYDEFGAILALSADRARH 480 Query: 481 LIENAFEDVTDDEMKLIDSKYDERAKALQAKAWSAVEGR 519 LIE F+DVTDDEMKLID+KYD+ AKALQAKAW+ E + Sbjct: 481 LIEQEFKDVTDDEMKLIDAKYDDHAKALQAKAWNTAEAK 519 >ref|YP_001354186.1| N utilization substance protein A [Janthinobacterium sp. Marseille] gb|ABR88645.1| N utilization substance protein A [Janthinobacterium sp. Marseille] Length = 519 Score = 820 bits (2117), Expect = 0.0, Method: Composition-based stats. Identities = 462/519 (89%), Positives = 496/519 (95%) Query: 1 MSREILLLVDALAREKNVDKEVVFGALEHALAQATKKRYEGEVDIRVSIDRESGEFESFR 60 MSREILLLVDALAREKNVDK++VFGALEHALAQATKKRYEG+VDIRVSIDRE+GEFESFR Sbjct: 1 MSREILLLVDALAREKNVDKDIVFGALEHALAQATKKRYEGDVDIRVSIDRETGEFESFR 60 Query: 61 RWHVVPDEAGLQLPDQEILLFEAKDQFPDIEVDEYIEDPIESVEFGRRFAQDTKQVVLQR 120 RWHVVPDEAGLQLPDQEIL FEAK+Q DIEVD+YIE+PIESV+FGRRFAQDTKQVVLQR Sbjct: 61 RWHVVPDEAGLQLPDQEILHFEAKEQIGDIEVDDYIEEPIESVDFGRRFAQDTKQVVLQR 120 Query: 121 IRDAEREQILADFLARGDALVTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDR 180 IRDAEREQILADFL RGD+LVTGTIKRMERGDAI+ESG+IEARLPRDQ IPKENLRIGDR Sbjct: 121 IRDAEREQILADFLERGDSLVTGTIKRMERGDAIVESGRIEARLPRDQTIPKENLRIGDR 180 Query: 181 VRAYILRVDRGARGPQVILSRTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAV 240 VRAYILR+DR ARGPQVILSRTAPEFIMKLFELEVPEIEQG LEIKSAARD GVRAKIAV Sbjct: 181 VRAYILRIDRNARGPQVILSRTAPEFIMKLFELEVPEIEQGLLEIKSAARDAGVRAKIAV 240 Query: 241 YTADKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVV 300 +T+DKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANV+SIVV Sbjct: 241 FTSDKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVV 300 Query: 301 DEEKHAMDVVVDEENLAIAIGRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTL 360 DEEKHAMDVVVDEENLAIAIGRGGQNVRLA+ELT WQINIMTAEESADKS ETA IRTL Sbjct: 301 DEEKHAMDVVVDEENLAIAIGRGGQNVRLASELTGWQINIMTAEESADKSQLETAAIRTL 360 Query: 361 FMEKLDVDQEVADILVEEGFSTLEEIAYVPITEMLEIESFDEETVNELRNRARDALVTEA 420 FMEKLDVDQEVADILV+EGF++LEEIAYVPI+EML+IESFDE+TVNELRNRARDALVTEA Sbjct: 361 FMEKLDVDQEVADILVDEGFASLEEIAYVPISEMLDIESFDEDTVNELRNRARDALVTEA 420 Query: 421 IASEEGLEGMEEELINFEGLDRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSERARQ 480 IASEEGLEGMEE L N EG+DRV+AGKLGLAG+KTL AF+ LAYDEFGAILALP++RARQ Sbjct: 421 IASEEGLEGMEEALANLEGMDRVMAGKLGLAGIKTLAAFSALAYDEFGAILALPADRARQ 480 Query: 481 LIENAFEDVTDDEMKLIDSKYDERAKALQAKAWSAVEGR 519 LIE+ F+DVTD+EMKLID+KYD+ AKALQAK WS E + Sbjct: 481 LIEDEFKDVTDEEMKLIDAKYDDHAKALQAKVWSLAEAK 519 >ref|YP_001100686.1| transcription pausing; L factor [Herminiimonas arsenicoxydans] emb|CAL62565.1| Transcription elongation protein nusA (N utilization substance protein A) (L factor) [Herminiimonas arsenicoxydans] Length = 519 Score = 813 bits (2099), Expect = 0.0, Method: Composition-based stats. Identities = 456/519 (87%), Positives = 491/519 (94%) Query: 1 MSREILLLVDALAREKNVDKEVVFGALEHALAQATKKRYEGEVDIRVSIDRESGEFESFR 60 MSREIL LVDALAREKNVD ++VFGALEHALAQATKKRYEG+VDIRVSIDR++GEFESFR Sbjct: 1 MSREILQLVDALAREKNVDPDIVFGALEHALAQATKKRYEGDVDIRVSIDRDTGEFESFR 60 Query: 61 RWHVVPDEAGLQLPDQEILLFEAKDQFPDIEVDEYIEDPIESVEFGRRFAQDTKQVVLQR 120 RWHVVPD+AGLQLPDQEIL FEAK+Q DIEVD++IE+PIESVEFGRRFAQDTKQVVLQR Sbjct: 61 RWHVVPDDAGLQLPDQEILHFEAKEQIGDIEVDDHIEEPIESVEFGRRFAQDTKQVVLQR 120 Query: 121 IRDAEREQILADFLARGDALVTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDR 180 IRDAEREQILADFL RGD+LVTGTIKRMERGDAI+ESG+IEARLPRDQ IPKENLRIGDR Sbjct: 121 IRDAEREQILADFLERGDSLVTGTIKRMERGDAIVESGRIEARLPRDQTIPKENLRIGDR 180 Query: 181 VRAYILRVDRGARGPQVILSRTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAV 240 VRAYILR+DR ARGPQVILSRTAPEFIMKLFELEVPEIEQG LEIKSAARD GVRAKIAV Sbjct: 181 VRAYILRIDRNARGPQVILSRTAPEFIMKLFELEVPEIEQGLLEIKSAARDAGVRAKIAV 240 Query: 241 YTADKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVV 300 +T+DKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANV+SIVV Sbjct: 241 FTSDKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVV 300 Query: 301 DEEKHAMDVVVDEENLAIAIGRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTL 360 DEEKHAMDVVVDEENLAIAIGRGGQNVRLA+ELT WQINIMTAEESADKS ETA R L Sbjct: 301 DEEKHAMDVVVDEENLAIAIGRGGQNVRLASELTGWQINIMTAEESADKSQLETAATRIL 360 Query: 361 FMEKLDVDQEVADILVEEGFSTLEEIAYVPITEMLEIESFDEETVNELRNRARDALVTEA 420 FMEKLDVDQEVADILV+EGF++LEEIAYVPI EML+IESFDE+TVNELRNRARDALVTEA Sbjct: 361 FMEKLDVDQEVADILVDEGFASLEEIAYVPIGEMLDIESFDEDTVNELRNRARDALVTEA 420 Query: 421 IASEEGLEGMEEELINFEGLDRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSERARQ 480 IASEEG+EGM+E L N EG+DR++AGKLGLAGVKTL AFAGLAYDEFGAILALP++RAR Sbjct: 421 IASEEGMEGMDEALANLEGMDRIVAGKLGLAGVKTLDAFAGLAYDEFGAILALPTDRARH 480 Query: 481 LIENAFEDVTDDEMKLIDSKYDERAKALQAKAWSAVEGR 519 LIEN F+DVTD+EMKLID+KYD+ AKALQAK WS E + Sbjct: 481 LIENEFKDVTDEEMKLIDAKYDDHAKALQAKVWSLAEAK 519 >ref|ZP_08276237.1| Transcription termination protein NusA [Oxalobacteraceae bacterium IMCC9480] gb|EGF30295.1| Transcription termination protein NusA [Oxalobacteraceae bacterium IMCC9480] Length = 519 Score = 804 bits (2076), Expect = 0.0, Method: Composition-based stats. Identities = 450/519 (86%), Positives = 490/519 (94%) Query: 1 MSREILLLVDALAREKNVDKEVVFGALEHALAQATKKRYEGEVDIRVSIDRESGEFESFR 60 MSRE+LLLVDALAREKNVDK++VFGALEHAL+QATKKRYEG+VDIRV+IDR++G FESFR Sbjct: 1 MSREVLLLVDALAREKNVDKDIVFGALEHALSQATKKRYEGDVDIRVTIDRDTGLFESFR 60 Query: 61 RWHVVPDEAGLQLPDQEILLFEAKDQFPDIEVDEYIEDPIESVEFGRRFAQDTKQVVLQR 120 RWHVVPDEAGLQLPDQEIL FEA +Q DIEVD++IE+PIESV+FGRRFAQDTKQVVLQR Sbjct: 61 RWHVVPDEAGLQLPDQEILHFEALEQISDIEVDDHIEEPIESVDFGRRFAQDTKQVVLQR 120 Query: 121 IRDAEREQILADFLARGDALVTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDR 180 IRDAEREQIL DFL RGD++VTGTIKRMERGDAI+ESGKIEARLPRDQMIPKENLRIGDR Sbjct: 121 IRDAEREQILQDFLERGDSMVTGTIKRMERGDAIVESGKIEARLPRDQMIPKENLRIGDR 180 Query: 181 VRAYILRVDRGARGPQVILSRTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAV 240 VRA+ILRVDR ARGPQVILSRT+PEFIMKLFELEVPEIEQG L IKSAARD GVRAKIAV Sbjct: 181 VRAFILRVDRNARGPQVILSRTSPEFIMKLFELEVPEIEQGLLIIKSAARDAGVRAKIAV 240 Query: 241 YTADKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVV 300 +T+DKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANV+SIVV Sbjct: 241 FTSDKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVV 300 Query: 301 DEEKHAMDVVVDEENLAIAIGRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTL 360 DEEKHAMDVVVDEENLAIAIGRGGQNVRLAAELT WQINIMTAEESA KSA ETA IR L Sbjct: 301 DEEKHAMDVVVDEENLAIAIGRGGQNVRLAAELTNWQINIMTAEESASKSANETAAIRAL 360 Query: 361 FMEKLDVDQEVADILVEEGFSTLEEIAYVPITEMLEIESFDEETVNELRNRARDALVTEA 420 FM KLDVDQEVADILV+EGF++LEEIAYVPI+EMLEIESFDE+TVNELR RARDALVTEA Sbjct: 361 FMAKLDVDQEVADILVDEGFASLEEIAYVPISEMLEIESFDEDTVNELRTRARDALVTEA 420 Query: 421 IASEEGLEGMEEELINFEGLDRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSERARQ 480 IASEEGLEGM++ L EG+DRV AGKLGLAGVKTL AF+GLAYDEFGAILALP++RARQ Sbjct: 421 IASEEGLEGMDDALATMEGMDRVTAGKLGLAGVKTLAAFSGLAYDEFGAILALPADRARQ 480 Query: 481 LIENAFEDVTDDEMKLIDSKYDERAKALQAKAWSAVEGR 519 LI++ F+DVTD+EMKLID+KYD+R KALQAKAW+ E + Sbjct: 481 LIDDEFKDVTDEEMKLIDAKYDDRVKALQAKAWNLAEAK 519