BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4507.p         (126 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776990.1| translation initiation factor IF-2 [Herbaspi...   174   3e-42
ref|YP_001100685.1| translation initiation factor IF-2 [Herminii...   155   2e-36
ref|YP_001354185.1| translation initiation factor IF-2 [Janthino...   153   1e-35
ref|YP_004754090.1| translation initiation factor 2 [Collimonas ...   150   7e-35
ref|YP_004029109.1| protein translation Initiation Factor 2 (IF-...   130   6e-29

>ref|YP_003776990.1| translation initiation factor IF-2 [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ65082.1| translation initiation factor 2 (IF-2; GTPase) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 954

 Score =  174 bits (442), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 105/114 (92%), Positives = 107/114 (93%)

Query: 1   MASNNVAQFATELKMPADLLLTQLRSAGVEKSSASDSLSKEDKDRLLEHLRRSRGAAPEG 60
           MASNNVAQFATELKMPADLLLTQLRSAGVEKSSASDSLSKEDKDRLLEHLRRSRGAAPEG
Sbjct: 1   MASNNVAQFATELKMPADLLLTQLRSAGVEKSSASDSLSKEDKDRLLEHLRRSRGAAPEG 60

Query: 61  EKKKITLTRKETTEIKQADSTGKSRTIQVEVRKKRTFIKRDEPTADEAGKPATA 114
           EKKKITLTRKETTEIKQAD+TGKSRTIQVEVRKKRTFIKRDEP  +E    A A
Sbjct: 61  EKKKITLTRKETTEIKQADATGKSRTIQVEVRKKRTFIKRDEPGVEETAARAAA 114


>ref|YP_001100685.1| translation initiation factor IF-2 [Herminiimonas arsenicoxydans]
 sp|A4G7S7|IF2_HERAR RecName: Full=Translation initiation factor IF-2
 emb|CAL62564.1| Translation initiation factor IF-2 [Herminiimonas arsenicoxydans]
          Length = 941

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 99/127 (77%), Positives = 107/127 (84%), Gaps = 1/127 (0%)

Query: 1   MASNNVAQFATELKMPADLLLTQLRSAGVEKSSASDSLSKEDKDRLLEHLRRSRGAAPEG 60
           MASNNVAQFATELKMPAD+LLTQLR AGVEKSS SD LSK DKD+LLEHLRR+ G AP+G
Sbjct: 1   MASNNVAQFATELKMPADVLLTQLRDAGVEKSSTSDELSKADKDKLLEHLRRAHGVAPDG 60

Query: 61  EKKKITLTRKETTEIKQADSTGKSRTIQVEVRKKRTFIKRDEPTADEAGKPATAS-VDQV 119
           EKKKITL RKETTEIKQAD+TGKSRTIQVEVRKKRTF+KRDEP A+EA     A  +D  
Sbjct: 61  EKKKITLMRKETTEIKQADATGKSRTIQVEVRKKRTFVKRDEPAAEEAPVVVAAPIIDAA 120

Query: 120 EAEPSAE 126
           E E  AE
Sbjct: 121 EVERRAE 127


>ref|YP_001354185.1| translation initiation factor IF-2 [Janthinobacterium sp.
           Marseille]
 sp|A6T0Y8|IF2_JANMA RecName: Full=Translation initiation factor IF-2
 gb|ABR89281.1| translation initiation factor IF-2 [Janthinobacterium sp.
           Marseille]
          Length = 937

 Score =  153 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 95/116 (81%), Positives = 103/116 (88%)

Query: 1   MASNNVAQFATELKMPADLLLTQLRSAGVEKSSASDSLSKEDKDRLLEHLRRSRGAAPEG 60
           MASNNVAQFATELKMPAD+LLTQLR AGVEKSS SD LSK DKD+LL+HLRR+ G AP+G
Sbjct: 1   MASNNVAQFATELKMPADVLLTQLRDAGVEKSSTSDELSKADKDKLLDHLRRAHGVAPDG 60

Query: 61  EKKKITLTRKETTEIKQADSTGKSRTIQVEVRKKRTFIKRDEPTADEAGKPATASV 116
           EKKKITLTRKETTEIKQAD+TGKSRTIQVEVRKKRTF+KRDE T +EA   A A V
Sbjct: 61  EKKKITLTRKETTEIKQADATGKSRTIQVEVRKKRTFVKRDESTPEEAPVKAAAPV 116


>ref|YP_004754090.1| translation initiation factor 2 [Collimonas fungivorans Ter331]
 gb|AEK63267.1| Translation initiation factor 2 [Collimonas fungivorans Ter331]
          Length = 946

 Score =  150 bits (378), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 89/101 (88%), Positives = 96/101 (95%)

Query: 1   MASNNVAQFATELKMPADLLLTQLRSAGVEKSSASDSLSKEDKDRLLEHLRRSRGAAPEG 60
           MASNNVAQFATELKMPADLLLTQL+SAGV+K+S  D+LSKEDKDRLLEHLRRS GA P+ 
Sbjct: 1   MASNNVAQFATELKMPADLLLTQLQSAGVQKNSTDDALSKEDKDRLLEHLRRSHGAVPDS 60

Query: 61  EKKKITLTRKETTEIKQADSTGKSRTIQVEVRKKRTFIKRD 101
           EKKKITLTRKETTEIKQAD+TGKSRTIQVEVRKKRTF+KRD
Sbjct: 61  EKKKITLTRKETTEIKQADATGKSRTIQVEVRKKRTFVKRD 101


>ref|YP_004029109.1| protein translation Initiation Factor 2 (IF-2) [Burkholderia
           rhizoxinica HKI 454]
 emb|CBW74965.1| Bacterial Protein Translation Initiation Factor 2 (IF-2)
           [Burkholderia rhizoxinica HKI 454]
          Length = 976

 Score =  130 bits (327), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 82/130 (63%), Positives = 103/130 (79%), Gaps = 5/130 (3%)

Query: 1   MASNNVAQFATELKMPADLLLTQLRSAGVEKSSASDSLSKEDKDRLLEHLRRSRGAAPEG 60
           MASNNVAQFA ELKMPA LLL QL++AGV+K+SA D LS+ DK RLL+HLR+S G+A +G
Sbjct: 1   MASNNVAQFAAELKMPAGLLLEQLQAAGVQKASADDVLSEADKARLLDHLRKSHGSA-DG 59

Query: 61  EKKKITLTRKETTEIKQADSTGKSRTIQVEVRKKRTFIKRDEPTAD----EAGKPATASV 116
           +K+KITLTR++T+EIKQAD+TGK+RTIQVEVRKKR F+KRDEP  +    E    ATA +
Sbjct: 60  DKRKITLTRRQTSEIKQADATGKARTIQVEVRKKRVFVKRDEPGTEVPNGEDQDSATAEL 119

Query: 117 DQVEAEPSAE 126
            + E +   E
Sbjct: 120 ARREEQARLE 129