BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4504.p         (130 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776989.1| ribosome-binding factor A protein [Herbaspir...   246   6e-64
ref|YP_001100684.1| ribosome-binding factor A [Herminiimonas ars...   214   4e-54
ref|YP_001354184.1| ribosome-binding factor A [Janthinobacterium...   211   4e-53
ref|YP_004754089.1| ribosome-binding factor A [Collimonas fungiv...   204   3e-51
ref|ZP_08273996.1| Ribosome-binding factor A [Oxalobacteraceae b...   198   3e-49

>ref|YP_003776989.1| ribosome-binding factor A protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ65081.1| ribosome-binding factor A protein [Herbaspirillum seropedicae SmR1]
          Length = 130

 Score =  246 bits (629), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 130/130 (100%), Positives = 130/130 (100%)

Query: 1   MAKHSKSIPGRGLRVADQIQRDLSELIAFELKDPRVGMITITEVQVTPDYAHAKVFFTTL 60
           MAKHSKSIPGRGLRVADQIQRDLSELIAFELKDPRVGMITITEVQVTPDYAHAKVFFTTL
Sbjct: 1   MAKHSKSIPGRGLRVADQIQRDLSELIAFELKDPRVGMITITEVQVTPDYAHAKVFFTTL 60

Query: 61  VDNPEAIKNTLAGLRKAGGYLRTQLGRRLTIHTLPELHFVHDNSTARGIEMSRLIDEANA 120
           VDNPEAIKNTLAGLRKAGGYLRTQLGRRLTIHTLPELHFVHDNSTARGIEMSRLIDEANA
Sbjct: 61  VDNPEAIKNTLAGLRKAGGYLRTQLGRRLTIHTLPELHFVHDNSTARGIEMSRLIDEANA 120

Query: 121 TRAKDSDDEA 130
           TRAKDSDDEA
Sbjct: 121 TRAKDSDDEA 130


>ref|YP_001100684.1| ribosome-binding factor A [Herminiimonas arsenicoxydans]
 sp|A4G7S6|RBFA_HERAR RecName: Full=Ribosome-binding factor A
 emb|CAL62563.1| ribosome-binding factor A [Herminiimonas arsenicoxydans]
          Length = 128

 Score =  214 bits (544), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 109/128 (85%), Positives = 119/128 (92%)

Query: 1   MAKHSKSIPGRGLRVADQIQRDLSELIAFELKDPRVGMITITEVQVTPDYAHAKVFFTTL 60
           MAKHSKSIPGRGLRVADQIQRDLSE++AFELKDPRVGMITITEVQVTPDYAHAKVFFT L
Sbjct: 1   MAKHSKSIPGRGLRVADQIQRDLSEIVAFELKDPRVGMITITEVQVTPDYAHAKVFFTML 60

Query: 61  VDNPEAIKNTLAGLRKAGGYLRTQLGRRLTIHTLPELHFVHDNSTARGIEMSRLIDEANA 120
            DN + IKNT++GL  A GY+R QLGRRL+IHTLPELHFVHD STARGIEMS+LIDEANA
Sbjct: 61  SDNKDEIKNTVSGLSAASGYIRGQLGRRLSIHTLPELHFVHDTSTARGIEMSKLIDEANA 120

Query: 121 TRAKDSDD 128
           TRAKD++D
Sbjct: 121 TRAKDAED 128


>ref|YP_001354184.1| ribosome-binding factor A [Janthinobacterium sp. Marseille]
 sp|A6T0Y7|RBFA_JANMA RecName: Full=Ribosome-binding factor A
 gb|ABR88918.1| ribosome-binding factor A [Janthinobacterium sp. Marseille]
          Length = 128

 Score =  211 bits (536), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 109/128 (85%), Positives = 118/128 (92%)

Query: 1   MAKHSKSIPGRGLRVADQIQRDLSELIAFELKDPRVGMITITEVQVTPDYAHAKVFFTTL 60
           MAKHSKSIPGRGLRVADQIQRDLSE+IAFELKDPRVGMITITEVQVTPDYAHAKVFFT L
Sbjct: 1   MAKHSKSIPGRGLRVADQIQRDLSEIIAFELKDPRVGMITITEVQVTPDYAHAKVFFTML 60

Query: 61  VDNPEAIKNTLAGLRKAGGYLRTQLGRRLTIHTLPELHFVHDNSTARGIEMSRLIDEANA 120
            D  + IKNT++GL  A GY+R QLGRRLTIHTLPELHFVHD STARGIEMS+LIDEANA
Sbjct: 61  SDKKDDIKNTVSGLTAASGYIRGQLGRRLTIHTLPELHFVHDTSTARGIEMSKLIDEANA 120

Query: 121 TRAKDSDD 128
           +RAKD++D
Sbjct: 121 SRAKDAED 128


>ref|YP_004754089.1| ribosome-binding factor A [Collimonas fungivorans Ter331]
 gb|AEK63266.1| Ribosome-binding factor A [Collimonas fungivorans Ter331]
          Length = 129

 Score =  204 bits (520), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 104/125 (83%), Positives = 114/125 (91%)

Query: 1   MAKHSKSIPGRGLRVADQIQRDLSELIAFELKDPRVGMITITEVQVTPDYAHAKVFFTTL 60
           MAKHSKSIPGRGLRVADQIQ+DLSE+I FELKDPRVGMITITEVQVTPDYAHAKVFFT L
Sbjct: 1   MAKHSKSIPGRGLRVADQIQKDLSEIIVFELKDPRVGMITITEVQVTPDYAHAKVFFTML 60

Query: 61  VDNPEAIKNTLAGLRKAGGYLRTQLGRRLTIHTLPELHFVHDNSTARGIEMSRLIDEANA 120
            D+ EAI NT+ GL +A G+LR QLGRRL+IHTLP LHF+HDNSTARG+EMSRLID ANA
Sbjct: 61  NDDLEAIANTVKGLTQAAGFLRNQLGRRLSIHTLPALHFIHDNSTARGVEMSRLIDLANA 120

Query: 121 TRAKD 125
           TR+KD
Sbjct: 121 TRSKD 125


>ref|ZP_08273996.1| Ribosome-binding factor A [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF32516.1| Ribosome-binding factor A [Oxalobacteraceae bacterium IMCC9480]
          Length = 129

 Score =  198 bits (503), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 99/127 (77%), Positives = 116/127 (91%)

Query: 1   MAKHSKSIPGRGLRVADQIQRDLSELIAFELKDPRVGMITITEVQVTPDYAHAKVFFTTL 60
           MAKHSK+IP RG+RVADQIQRDL+E++A+ELKDPRVGMIT+TEVQ+TPDYAHAKVFFT L
Sbjct: 1   MAKHSKTIPVRGIRVADQIQRDLAEIVAYELKDPRVGMITVTEVQLTPDYAHAKVFFTML 60

Query: 61  VDNPEAIKNTLAGLRKAGGYLRTQLGRRLTIHTLPELHFVHDNSTARGIEMSRLIDEANA 120
            D+ EAIKNT+ GL+ A G++R QLGRRL +HTLPELHFVHD STARG+E+S+LIDEANA
Sbjct: 61  SDDKEAIKNTVTGLKIASGFIRGQLGRRLHVHTLPELHFVHDTSTARGMELSKLIDEANA 120

Query: 121 TRAKDSD 127
           TRAKD D
Sbjct: 121 TRAKDDD 127