BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4503.p (274 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776988.1| tRNA pseudouridine synthase B protein [Herba... 486 e-135 ref|YP_001354183.1| tRNA pseudouridine synthase B [Janthinobacte... 386 e-105 ref|YP_001100683.1| tRNA pseudouridine 5S synthase [Herminiimona... 381 e-104 ref|ZP_08273997.1| tRNA pseudouridine 5S synthase [Oxalobacterac... 380 e-103 ref|YP_004754088.1| tRNA pseudouridine 5S synthase [Collimonas f... 369 e-100 >ref|YP_003776988.1| tRNA pseudouridine synthase B protein [Herbaspirillum seropedicae SmR1] gb|ADJ65080.1| tRNA pseudouridine synthase B protein [Herbaspirillum seropedicae SmR1] Length = 325 Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 257/274 (93%), Positives = 268/274 (97%) Query: 1 MLNAPKAGHTGTLDPFATGLLPLCFGEATKFSQDLLEADKTYEALVHLGVRTDTGDTEGQ 60 MLNAPKAGHTGTLDPFATGLLPLCFGEATKFSQDLLEADKTYEA+VHLGVRTDTGDTEGQ Sbjct: 52 MLNAPKAGHTGTLDPFATGLLPLCFGEATKFSQDLLEADKTYEAVVHLGVRTDTGDTEGQ 111 Query: 61 VISERAVEVSVAQIEAALAQFRGPISQVPPMHSALKRDGKPLYEYARAGITLEREARNVT 120 V+SER VEVSV QIEAA+AQFRGPISQVPPMHSALKRDGKPLYEYARAGITLEREARNVT Sbjct: 112 VLSERPVEVSVEQIEAAMAQFRGPISQVPPMHSALKRDGKPLYEYARAGITLEREARNVT 171 Query: 121 IHALDLLDYQAPMLRIRVTCSKGTYIRVLGEDIGEVLGCGAHLNALRRTGVGALTLDGAV 180 IHAL+LL+YQAPMLRIRVTCSKGTYIRVLGEDIGEVLGCGAHLNALRR GVG LTL+GAV Sbjct: 172 IHALELLNYQAPMLRIRVTCSKGTYIRVLGEDIGEVLGCGAHLNALRRIGVGPLTLEGAV 231 Query: 181 TLETFDAAAELEARKALLLPVDGLLRSFPAVELNDELARRFLHGQRLPLGKEGVAVPEQS 240 TLE+ DAA ELEARKALLLPVDGLLRSFPAV+L+DELARRFLHGQRLPLGKEGVAVP+Q+ Sbjct: 232 TLESVDAAGELEARKALLLPVDGLLRSFPAVQLSDELARRFLHGQRLPLGKEGVAVPQQT 291 Query: 241 GRVRVYRSSDAALLGTGLLQEYAILAPERLVSTA 274 GRVRVYRSSDAALLGTGLLQEYAILAPERLVSTA Sbjct: 292 GRVRVYRSSDAALLGTGLLQEYAILAPERLVSTA 325 >ref|YP_001354183.1| tRNA pseudouridine synthase B [Janthinobacterium sp. Marseille] gb|ABR89004.1| tRNA pseudouridine synthase B [Janthinobacterium sp. Marseille] Length = 314 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 200/273 (73%), Positives = 227/273 (83%), Gaps = 1/273 (0%) Query: 1 MLNAPKAGHTGTLDPFATGLLPLCFGEATKFSQDLLEADKTYEALVHLGVRTDTGDTEGQ 60 +L+A KAGHTGTLDPFATGLLPLCFGEATKF+QDLL+ADKTYE +VHLG+ T+TGDTEG+ Sbjct: 37 LLSALKAGHTGTLDPFATGLLPLCFGEATKFAQDLLDADKTYETVVHLGITTNTGDTEGE 96 Query: 61 VISERAVEVSVAQIEAALAQFRGPISQVPPMHSALKRDGKPLYEYARAGITLEREARNVT 120 IS AV+V+ QI+ L QFRG I QVPPM+SALKRDGKPLYEYAR GITLEREAR VT Sbjct: 97 TISTAAVDVTREQIDTVLGQFRGDILQVPPMYSALKRDGKPLYEYAREGITLEREARPVT 156 Query: 121 IHALDLLDYQAPMLRIRVTCSKGTYIRVLGEDIGEVLGCGAHLNALRRTGVGALTLDGAV 180 IH L+ +DYQAP L +RV CSKGTYIRVLGEDIG LGCGAHLNALRR VG L +D A+ Sbjct: 157 IHLLEFVDYQAPFLTLRVRCSKGTYIRVLGEDIGAALGCGAHLNALRRIQVGDLLIDKAI 216 Query: 181 TLETFDAAAELEARKALLLPVDGLLRSFPAVELNDELARRFLHGQRLPLGKEGVAVPEQS 240 T+E AA E AR ALL PVD LL SFPA+ L++ELARRFLHGQRL LGKE + VP + Sbjct: 217 TIEQL-AATEEGARSALLAPVDALLTSFPALYLSEELARRFLHGQRLALGKEDIVVPPEQ 275 Query: 241 GRVRVYRSSDAALLGTGLLQEYAILAPERLVST 273 GRVRVYR +D LLGTGL+QE+AILAPERL+ST Sbjct: 276 GRVRVYRDADKVLLGTGLMQEFAILAPERLIST 308 >ref|YP_001100683.1| tRNA pseudouridine 5S synthase [Herminiimonas arsenicoxydans] emb|CAL62562.1| tRNA pseudouridine synthase B (tRNA pseudouridine 55 synthase) (Psi55 synthase) (tRNA-uridine isomerase) (tRNA pseudouridylate synthase) [Herminiimonas arsenicoxydans] Length = 314 Score = 381 bits (978), Expect = e-104, Method: Composition-based stats. Identities = 197/273 (72%), Positives = 227/273 (83%), Gaps = 1/273 (0%) Query: 1 MLNAPKAGHTGTLDPFATGLLPLCFGEATKFSQDLLEADKTYEALVHLGVRTDTGDTEGQ 60 +LNA KAGHTGTLDPFATGLLPLCFGEATKF+QDLL+ADKTYE +VHLGV T+TGDTEG Sbjct: 37 LLNALKAGHTGTLDPFATGLLPLCFGEATKFAQDLLDADKTYETVVHLGVTTNTGDTEGD 96 Query: 61 VISERAVEVSVAQIEAALAQFRGPISQVPPMHSALKRDGKPLYEYARAGITLEREARNVT 120 VI+ AV++S QI+A LAQFRG I QVPPM+SALKRDGKPLYEYARAGITLEREAR VT Sbjct: 97 VIATHAVDISRQQIDAVLAQFRGDIEQVPPMYSALKRDGKPLYEYARAGITLEREARPVT 156 Query: 121 IHALDLLDYQAPMLRIRVTCSKGTYIRVLGEDIGEVLGCGAHLNALRRTGVGALTLDGAV 180 IH L+ +D+QAP L +RV CSKGTYIRVLGEDIG LGCGAHLNALRR VG L + A+ Sbjct: 157 IHLLEFVDFQAPFLTLRVRCSKGTYIRVLGEDIGAALGCGAHLNALRRIQVGDLLIAQAI 216 Query: 181 TLETFDAAAELEARKALLLPVDGLLRSFPAVELNDELARRFLHGQRLPLGKEGVAVPEQS 240 T+E A + +AR A L VD LL SFPA+ L++ELA+RFLHGQRL LGKE + +PE Sbjct: 217 TIEEL-TAKDADARIAALASVDALLTSFPALRLSEELAKRFLHGQRLALGKENIVLPEGQ 275 Query: 241 GRVRVYRSSDAALLGTGLLQEYAILAPERLVST 273 GR+R+YR SD LLGTGL+QEY+ILAPERL+ST Sbjct: 276 GRMRIYRESDGQLLGTGLMQEYSILAPERLIST 308 >ref|ZP_08273997.1| tRNA pseudouridine 5S synthase [Oxalobacteraceae bacterium IMCC9480] gb|EGF32517.1| tRNA pseudouridine 5S synthase [Oxalobacteraceae bacterium IMCC9480] Length = 310 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 200/274 (72%), Positives = 226/274 (82%), Gaps = 1/274 (0%) Query: 1 MLNAPKAGHTGTLDPFATGLLPLCFGEATKFSQDLLEADKTYEALVHLGVRTDTGDTEGQ 60 + NA KAGHTGTLDPFATGLLPLCFGEATKF+QDLLEADKTYE +VHLG+R+DTGDTEGQ Sbjct: 37 LFNAEKAGHTGTLDPFATGLLPLCFGEATKFAQDLLEADKTYETVVHLGLRSDTGDTEGQ 96 Query: 61 VISERAVEVSVAQIEAALAQFRGPISQVPPMHSALKRDGKPLYEYARAGITLEREARNVT 120 ++ V+V+ AQI+A L +FRG I QVPPM+SALKRDGKPLYEYARAGITLEREAR V Sbjct: 97 ILETLPVDVTRAQIDAVLEKFRGAIDQVPPMYSALKRDGKPLYEYARAGITLEREARPVF 156 Query: 121 IHALDLLDYQAPMLRIRVTCSKGTYIRVLGEDIGEVLGCGAHLNALRRTGVGALTLDGAV 180 IH L+ + Y+AP L +RV+CSKGTYIRVLGEDIG LGCG HLNALRRT VG L L AV Sbjct: 157 IHLLEFVRYEAPFLTLRVSCSKGTYIRVLGEDIGAALGCGGHLNALRRTRVGDLVLADAV 216 Query: 181 TLETFDAAAELEARKALLLPVDGLLRSFPAVELNDELARRFLHGQRLPLGKEGVAVPEQS 240 TLE A AE + R A+L PVD LL SFP + LNDELARRFLHGQRL L KE +A+P Sbjct: 217 TLEQIAAVAE-DQRGAMLAPVDALLASFPLLSLNDELARRFLHGQRLSLVKEAIALPATE 275 Query: 241 GRVRVYRSSDAALLGTGLLQEYAILAPERLVSTA 274 GRVRV+R SDA LLGTGL+QE+ +LAPERLVSTA Sbjct: 276 GRVRVFRESDACLLGTGLMQEFGVLAPERLVSTA 309 >ref|YP_004754088.1| tRNA pseudouridine 5S synthase [Collimonas fungivorans Ter331] gb|AEK63265.1| tRNA pseudouridine 5S synthase [Collimonas fungivorans Ter331] Length = 335 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 199/279 (71%), Positives = 226/279 (81%), Gaps = 6/279 (2%) Query: 1 MLNAPKAGHTGTLDPFATGLLPLCFGEATKFSQDLLEADKTYEALVHLGVRTDTGDTEGQ 60 +LNA KAGHTGTLDPFATG+LPLCFGEATKF+QDLL+ADKTYE L+HLGV T TGDTEG+ Sbjct: 55 LLNAQKAGHTGTLDPFATGVLPLCFGEATKFAQDLLDADKTYETLIHLGVSTTTGDTEGE 114 Query: 61 VISERAVEVSVAQIEAALAQFRGPISQVPPMHSALKRDGKPLYEYARAGITLEREARNVT 120 V+ + V VS AQI+A LAQFRGPI QVPPM+SALKRDGKPLYEYARAGITLEREAR+V+ Sbjct: 115 VLERKDVSVSRAQIDAVLAQFRGPIKQVPPMYSALKRDGKPLYEYARAGITLEREARDVS 174 Query: 121 IHALDLLDYQAPMLRIRVTCSKGTYIRVLGEDIGEVLGCGAHLNALRRTGVGALTLDGAV 180 IH L+ L Y+AP LR+RV CSKGTYIRVLGEDIG LGCGAHL LRR VG LTLDG V Sbjct: 175 IHTLEFLAYEAPFLRLRVACSKGTYIRVLGEDIGAALGCGAHLQELRRIQVGHLTLDGCV 234 Query: 181 TLETFDAAAELEARKALLLPVDGLLRSFPAVELNDELARRFLHGQRLPLGKEGVAVPEQS 240 TLE DA + E R ALL PVD LL +FP V L++ LA+RFL GQRL L KEGVA+P + Sbjct: 235 TLEQLDATGQAE-RSALLAPVDSLLLTFPEVLLSEPLAKRFLQGQRLTLAKEGVALPADA 293 Query: 241 GRVRVY-RSSDAA----LLGTGLLQEYAILAPERLVSTA 274 GRVRVY + +DA LLGT L EY +LAPERL++TA Sbjct: 294 GRVRVYLQPADAVSVRQLLGTAQLHEYGVLAPERLIATA 332