BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4499.p (836 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774366.1| VGR-related protein [Herbaspirillum seropedi... 1171 0.0 ref|YP_003777698.1| VGR-related type VI secretion system protein... 1099 0.0 ref|YP_004226544.1| type VI secretion system Vgr family protein ... 801 0.0 ref|YP_834106.1| Rhs element Vgr protein [Burkholderia cenocepac... 779 0.0 ref|YP_622519.1| Rhs element Vgr protein [Burkholderia cenocepac... 779 0.0 >ref|YP_003774366.1| VGR-related protein [Herbaspirillum seropedicae SmR1] emb|CAM32692.1| VGR-related protein [Herbaspirillum seropedicae] gb|ADJ62458.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 928 Score = 1171 bits (3030), Expect = 0.0, Method: Composition-based stats. Identities = 567/809 (70%), Positives = 672/809 (83%), Gaps = 2/809 (0%) Query: 16 AMNDRSTPLSTWFQALISQGDRLLRIDSPLGTNALLPQRVVGRERLGRGYEYTVDVLATN 75 AM++ T LS + Q R+L++DS LG + LLPQR+VG ERLGRGY+YT+D+++T Sbjct: 12 AMDNVLTTLSALADTFVGQEKRILKLDSVLGPDVLLPQRMVGSERLGRGYDYTIDLVSTR 71 Query: 76 NHIELKKLVAEPVTLWIKQSHRDYSPVHGYVHTARRLGSDGQVLFCQIVVVSWLNFLKYR 135 + IELKKL+A+PVTLW++Q DY+P+HGYVHTARRLGSDGQ+ QI + WL+FLKYR Sbjct: 72 DDIELKKLIAQPVTLWLQQDGSDYAPLHGYVHTARRLGSDGQLASFQIGMAPWLHFLKYR 131 Query: 136 KDARIWQDKTAEDILAEVFDAHPQARGNYRFELATQALPRSYCTQYETDWHFAQRLMEEE 195 KDARIWQD A+DILA+VFD H ARGNYRFE+ T ALPRSYCTQYETDWHF QRLMEEE Sbjct: 132 KDARIWQDSKADDILADVFDQHAYARGNYRFEIVTPALPRSYCTQYETDWHFVQRLMEEE 191 Query: 196 GWYSYHEQKPDGSGHVLVITDNTHGLKPIKGEQAEFHTGGTADEAQKIVHWSASRSLSSS 255 GWY+YHEQKPDGSGHVLVITDNT KP+ EQ FH GT DE +I+HWSASR L+S+ Sbjct: 192 GWYAYHEQKPDGSGHVLVITDNTDQAKPLAPEQLAFHGAGTQDEVNRILHWSASRGLAST 251 Query: 256 ALATRTDDYRAPSAEKSTQLPVLADHGNLPDQLEVYEYTGAYSYDKQEQGDRQAKIRVEQ 315 LATRTDDY++P +K TQ VL +HG LP +LEVYEY+G YSY KQ+ GDRQA++RVEQ Sbjct: 252 RLATRTDDYKSPGDQKQTQERVLPEHGALPGELEVYEYSGPYSYAKQDDGDRQARLRVEQ 311 Query: 316 WESSMKRFHGVSGVRSLECGRWFSLEGHPAHTQDPAEDRQFMLVAVEWFIENNLPLSNNV 375 WESSMKRF GVSG R+L GRWF+L HPAH D +D QFML+AVEWFIENNLPLS Sbjct: 312 WESSMKRFMGVSGARTLAAGRWFTLTDHPAHRGDSKQDSQFMLIAVEWFIENNLPLSGTA 371 Query: 376 PEFPGSLKPALDRFKATISRLESSRTGENELTGHCFNRFEVQRRKVPFRSPMEHPKPVMH 435 +FPGSLKP LD FKA++ R + G N TGHCFNRFEVQRRK+P+RSP +H KPVMH Sbjct: 372 RDFPGSLKPQLDAFKASMGR-SNDDAGGNARTGHCFNRFEVQRRKLPYRSPFDHTKPVMH 430 Query: 436 PQTAVVVGPAGEEIYTDKLNRVKVRFRWDRQNPGDERASCWVRVSYPNAGENWGGVHVPR 495 PQTAVVVGP GEE++TDKLNRVKV+FRWDR NPGDE+ASCWVRVSYPNAGENWG V VPR Sbjct: 431 PQTAVVVGPQGEEVFTDKLNRVKVQFRWDRINPGDEKASCWVRVSYPNAGENWGEVKVPR 490 Query: 496 IRQELIISFLNGDPDRPVATGRLFNEEQAPQWHTDGRLSGLKSKEFGGSGFNQLVMDDTS 555 + QELIISFLNGDPDRPVATGRLFN+EQ PQWHTDGRLSGLKSKEFGG+GFNQLVMDDT+ Sbjct: 491 VGQELIISFLNGDPDRPVATGRLFNQEQPPQWHTDGRLSGLKSKEFGGNGFNQLVMDDTT 550 Query: 556 NQNRLHLYSSHANAQLNLGYLVRQVGNERQSFYGSGFSLNTDDYGAIVADKGLYLSTFAR 615 +QNR+HLYSS +NAQLNLGYLV Q NER++FYGSGF+L+TDDYGA+V KGLYLS++ R Sbjct: 551 SQNRVHLYSSQSNAQLNLGYLVSQADNERRNFYGSGFALSTDDYGAVVTQKGLYLSSYGR 610 Query: 616 PGPHGTQLDTTEATNQLKAGAALTKNLSETASRAGAEPLAGSEELEALIDSTQDSYTEAG 675 PGP GTQLD +EAT+ +KA A L + LS++ASRAGAE LA + L+ +D+T+D Y+ G Sbjct: 611 PGPQGTQLDASEATSLMKASADLARGLSDSASRAGAEALA-QDSLKDFVDATEDKYSGQG 669 Query: 676 QSGANRFKQSVLVAASPSGIGMTTPKGAHVHAGSEVTLSAGENTSIATGKSLLASAAEKI 735 Q ANRFK+ +L+ A+P+GIG+ T +G VH+ E TL++G++TSIA+GKSLLA+ EKI Sbjct: 670 QGSANRFKKPLLMMAAPAGIGLATDQGTQVHSAQETTLTSGKDTSIASGKSLLATVKEKI 729 Query: 736 SLFAFNAGAKLFAAKGKVEVQAQSDDLELIAEKVARLLSRNGRVEIHAKDEVIISAGGSF 795 SLFA NAG KLFAAKGKVE+QAQSDDL+LIAEKVARLLS +GRVEIHAKDEV+ISAGGSF Sbjct: 730 SLFAQNAGMKLFAAKGKVEIQAQSDDLDLIAEKVARLLSTSGRVEIHAKDEVMISAGGSF 789 Query: 796 VKINASGITQGTQGAWEAKAATHSMPGPG 824 ++IN++GITQGT G WEAKA+ HSMPGP Sbjct: 790 IQINSAGITQGTPGKWEAKASLHSMPGPA 818 >ref|YP_003777698.1| VGR-related type VI secretion system protein [Herbaspirillum seropedicae SmR1] gb|ADJ65790.1| VGR-related type VI secretion system protein [Herbaspirillum seropedicae SmR1] Length = 886 Score = 1099 bits (2842), Expect = 0.0, Method: Composition-based stats. Identities = 531/795 (66%), Positives = 645/795 (81%) Query: 29 QALISQGDRLLRIDSPLGTNALLPQRVVGRERLGRGYEYTVDVLATNNHIELKKLVAEPV 88 QA I+Q RLL++DS LG + LLPQR+V ERL GYE T+D+LAT+ I L++L+A+PV Sbjct: 13 QARITQHRRLLQLDSSLGPDILLPQRLVATERLNDGYEVTIDLLATHTGIALEQLIAQPV 72 Query: 89 TLWIKQSHRDYSPVHGYVHTARRLGSDGQVLFCQIVVVSWLNFLKYRKDARIWQDKTAED 148 TLWI+Q D P+HGYVHTA+RLGSDG++ FCQ+ + WL+FL++RKDARIWQDK ED Sbjct: 73 TLWIRQHDGDTLPLHGYVHTAKRLGSDGELDFCQLSLSPWLHFLRFRKDARIWQDKRTED 132 Query: 149 ILAEVFDAHPQARGNYRFELATQALPRSYCTQYETDWHFAQRLMEEEGWYSYHEQKPDGS 208 ILA+VF+ HPQARG+YRF+L PR YCTQYETDWHF QRLMEEEGW+++HEQ+ DGS Sbjct: 133 ILADVFNNHPQARGHYRFQLERPYTPRPYCTQYETDWHFVQRLMEEEGWFAHHEQREDGS 192 Query: 209 GHVLVITDNTHGLKPIKGEQAEFHTGGTADEAQKIVHWSASRSLSSSALATRTDDYRAPS 268 GHVLVITDNT L + + FH DE KI+HWSASR+LSS R+DDY++P Sbjct: 193 GHVLVITDNTWNLPGLPQQGIAFHGAAPRDELDKILHWSASRTLSSKGWRGRSDDYKSPG 252 Query: 269 AEKSTQLPVLADHGNLPDQLEVYEYTGAYSYDKQEQGDRQAKIRVEQWESSMKRFHGVSG 328 +K + V+ ++G LP QLE+YEYTGAYS+ QEQG+RQA ++VEQWESSM+R+ VSG Sbjct: 253 MKKEAEEQVMPEYGQLPAQLEMYEYTGAYSFRLQEQGNRQADLQVEQWESSMQRYSAVSG 312 Query: 329 VRSLECGRWFSLEGHPAHTQDPAEDRQFMLVAVEWFIENNLPLSNNVPEFPGSLKPALDR 388 VR+L CGRWF LE HP H +P +RQF+++A++WF+ENNLPLS+ +FPGSLK AL Sbjct: 313 VRNLACGRWFRLEEHPQHRAEPDRERQFVILAIDWFVENNLPLSHQALDFPGSLKGALMA 372 Query: 389 FKATISRLESSRTGENELTGHCFNRFEVQRRKVPFRSPMEHPKPVMHPQTAVVVGPAGEE 448 FK +I R +NE TGHCFNRFEVQRRK+PFR H +PVM PQTA+VVGPA EE Sbjct: 373 FKESIRRERQVAETDNEHTGHCFNRFEVQRRKLPFRPARAHARPVMLPQTAIVVGPASEE 432 Query: 449 IYTDKLNRVKVRFRWDRQNPGDERASCWVRVSYPNAGENWGGVHVPRIRQELIISFLNGD 508 +YTD L+R+KV+FRWDR NPG+E ASCWVRVSYPNAG+ WG + VPRI QE+I+SFLNGD Sbjct: 433 VYTDHLDRIKVQFRWDRINPGNEAASCWVRVSYPNAGQYWGAIQVPRIGQEVIVSFLNGD 492 Query: 509 PDRPVATGRLFNEEQAPQWHTDGRLSGLKSKEFGGSGFNQLVMDDTSNQNRLHLYSSHAN 568 PDRPV TGRLFN EQ PQWHT+GRLSG+KSKEFGG+GFNQ+VMDDT QNR+HLYS++ + Sbjct: 493 PDRPVVTGRLFNAEQRPQWHTNGRLSGVKSKEFGGTGFNQMVMDDTPEQNRIHLYSTNTH 552 Query: 569 AQLNLGYLVRQVGNERQSFYGSGFSLNTDDYGAIVADKGLYLSTFARPGPHGTQLDTTEA 628 AQLNLG+LV Q GNER+SF+GSGF+L+TD YGAIV KGLY+ST+ RPG GTQLD EA Sbjct: 553 AQLNLGHLVSQTGNERRSFFGSGFALSTDAYGAIVTHKGLYISTYGRPGAQGTQLDAREA 612 Query: 629 TNQLKAGAALTKNLSETASRAGAEPLAGSEELEALIDSTQDSYTEAGQSGANRFKQSVLV 688 T QLK+GA L++ LSETA++AGAEPLAG E L ID+TQ Y + Q+ ANRF+Q++L+ Sbjct: 613 TGQLKSGANLSRTLSETAAKAGAEPLAGQEALRDFIDATQADYEDPSQAQANRFQQAILL 672 Query: 689 AASPSGIGMTTPKGAHVHAGSEVTLSAGENTSIATGKSLLASAAEKISLFAFNAGAKLFA 748 AASP GIG+TTPKG H HAG E+TLS+G +TSIA GKSLLAS AEKISLFAF AG KLF+ Sbjct: 673 AASPDGIGLTTPKGVHTHAGGEITLSSGADTSIAVGKSLLASVAEKISLFAFKAGIKLFS 732 Query: 749 AKGKVEVQAQSDDLELIAEKVARLLSRNGRVEIHAKDEVIISAGGSFVKINASGITQGTQ 808 AKGKVEVQAQSDDLELIAEKVARLLS +GRVEI AK+EV+I+AGGSF+++NASGITQGT Sbjct: 733 AKGKVEVQAQSDDLELIAEKVARLLSASGRVEIRAKEEVLITAGGSFIRLNASGITQGTS 792 Query: 809 GAWEAKAATHSMPGP 823 GAWEAKA TH+MPGP Sbjct: 793 GAWEAKAGTHAMPGP 807 >ref|YP_004226544.1| type VI secretion system Vgr family protein [Burkholderia sp. CCGE1001] gb|ADX53484.1| type VI secretion system Vgr family protein [Burkholderia sp. CCGE1001] Length = 929 Score = 801 bits (2070), Expect = 0.0, Method: Composition-based stats. Identities = 404/814 (49%), Positives = 546/814 (67%), Gaps = 14/814 (1%) Query: 32 ISQGDRLLRIDSPLGTNALLPQRVVGRERLGRGYEYTVDVLATNNHIELKKLVAEPVTLW 91 ++Q DRLL++D+PLG N LLPQR+VG R+GR YE+T+DV++T++ IELKKL+A+PVTLW Sbjct: 14 LAQSDRLLKLDTPLGENVLLPQRLVGNSRIGRHYEFTLDVVSTSDGIELKKLIAQPVTLW 73 Query: 92 IKQSHRDYSPVHGYVHTARRLGSDGQVLFCQIVVVSWLNFLKYRKDARIWQDKTAEDILA 151 ++QS R Y+P HGYVHTARRLGSD + QI SW++FL++RKDARIWQDK+ ++IL Sbjct: 74 MQQSDRSYTPHHGYVHTARRLGSDSALTSYQIEFSSWMHFLRFRKDARIWQDKSVDEILT 133 Query: 152 EVFDAHPQARGNYRFELATQALPRSYCTQYETDWHFAQRLMEEEGWYSYHEQKPDGSGHV 211 +VF+ HPQARG +RF L RS+C QYE DW+F RLME EG + Y EQ DG H Sbjct: 134 DVFNMHPQARGAFRFTLRNPLPQRSFCVQYEDDWNFCHRLMEAEGVFGYFEQAEDGKSHT 193 Query: 212 LVITDNTHGLKPIKGEQAEFHTGGTADEAQKIVHWSASRSLSSSALATRTDDYRAPSAE- 270 LV+TDN L+P+ + EF+ GT E V WS +R+L S+ L TRT DY+APS+ Sbjct: 194 LVVTDNLDVLEPLSPQAVEFYRSGTDSETDAFVQWSGTRTLQSTTLTTRTFDYKAPSSAA 253 Query: 271 --KSTQLPVLADHGNLPDQLEVYEYTGAYSYDKQEQGDRQAKIRVEQWESSMKRFHGVSG 328 K T +P L GNLP Q EVYEYTG YSY +Q +GD+ +K+R+E+WES KRF G+ Sbjct: 254 NPKGTTIPTLTTQGNLPSQAEVYEYTGPYSYAEQARGDQLSKLRMEEWESRAKRFQGMGA 313 Query: 329 VRSLECGRWFSLEGHPAHTQDPAEDRQFMLVAVEWFIENNLPLSNNVPEFPGSLKPALDR 388 VR ++ GRWF L HP H+ ++RQF ++ VEW IENNLP+S+ +FP SL L Sbjct: 314 VRRIDAGRWFELADHPDHSVGSQQERQFAVIGVEWTIENNLPVSSGTTDFPHSLNSTLAA 373 Query: 389 FKATISRLESSRTGENELTGHCFNRFEVQRRKVPFRSPMEHPKPVMHPQTAVVVGPAGEE 448 +A + G E QRR VP+RSP+EH KP MH QTA VVGPA +E Sbjct: 374 ARAQYGMQALIIKSSDGSEGFFMASVEAQRRTVPYRSPLEHAKPPMHLQTATVVGPANQE 433 Query: 449 IYTDKLNRVKVRFRWDRQNPGDERASCWVRVSYPNAGENWGGVHVPRIRQELIISFLNGD 508 ++TD LNR+KVR WDR NPGDE ASCW+RV++ NAG ++G VHVPRI +E+I+SFL+GD Sbjct: 434 VFTDTLNRIKVRMHWDRLNPGDETASCWMRVAHSNAGGSYGAVHVPRIGEEVIVSFLDGD 493 Query: 509 PDRPVATGRLFNEEQAPQWHTDGRLSGLKSKEFGGSGFNQLVMDDTSNQNRLHLYSSHAN 568 DRP+ TGRL+N + P WH++G LSG KSKE+ GSGFNQ+VMDD + QNR+ LYSS N Sbjct: 494 CDRPIVTGRLYNGSKTPDWHSNGILSGYKSKEYHGSGFNQMVMDDATGQNRIQLYSSSTN 553 Query: 569 AQLNLGYLVRQVGNERQSFYGSGFSLNTDDYGAIVADKGLYLSTFARPGPHGTQLDTTEA 628 AQL+LGYLV Q GN R ++ GSGF L +D YGA+ A +GLY+ST G LD A Sbjct: 554 AQLHLGYLVSQTGNTRGAYLGSGFDLKSDAYGAVRAGQGLYISTHPTTGAATQPLDVRNA 613 Query: 629 TNQLKAGAALTKNLSETASRAGAEPLA-GSEELEALIDSTQDSYTEAGQSGANR------ 681 QL + ++ ++LS+++ A L G E L+A D+TQ+S + A +G N Sbjct: 614 NAQLVSSESVMESLSQSSETHQAGSLKDGYESLKAFTDATQNSVSGAADTGGNTAGGGTG 673 Query: 682 ----FKQSVLVAASPSGIGMTTPKGAHVHAGSEVTLSAGENTSIATGKSLLASAAEKISL 737 FK+ V++ ASP+G +T K A + A + L +G++T IA+GKSLLAS EKISL Sbjct: 674 NANVFKEPVILFASPAGFATSTQKSAQISADQHINLVSGQSTHIASGKSLLASVTEKISL 733 Query: 738 FAFNAGAKLFAAKGKVEVQAQSDDLELIAEKVARLLSRNGRVEIHAKDEVIISAGGSFVK 797 F N+G KLFA KGKVE++A SD++E+ A+K +LLS + +E+ + +++++GG++++ Sbjct: 734 FVQNSGMKLFAGKGKVEIRAHSDNVEVTAQKTLKLLSASETIEVASAKGILLTSGGAYIR 793 Query: 798 INASGITQGTQGAWEAKAATHSMPGPGWPVHEFP 831 I I G + K + HS GP + P Sbjct: 794 IEGGNIQIHAPGTVDIKGSQHSFEGPARMNYSLP 827 >ref|YP_834106.1| Rhs element Vgr protein [Burkholderia cenocepacia HI2424] gb|ABK07213.1| Rhs element Vgr protein [Burkholderia cenocepacia HI2424] Length = 1063 Score = 779 bits (2012), Expect = 0.0, Method: Composition-based stats. Identities = 394/811 (48%), Positives = 543/811 (66%), Gaps = 18/811 (2%) Query: 34 QGDRLLRIDSPLGTNALLPQRVVGRERLGRGYEYTVDVLATNNHIELKKLVAEPVTLWIK 93 Q DRLL++D+PLG+N L QR VGR R+GR YE+T+DVL+T++ +ELKKL+A+PVTLWI+ Sbjct: 16 QQDRLLKLDTPLGSNVLTVQRAVGRSRIGRAYEFTLDVLSTDSDLELKKLIAQPVTLWIQ 75 Query: 94 QSHRDYSPVHGYVHTARRLGSDGQVLFCQIVVVSWLNFLKYRKDARIWQDKTAEDILAEV 153 Q R Y P++GYVHTARRLG+DG + Q+ + +FLK+R+D RIW D T + I+++V Sbjct: 76 QGDRSYRPMNGYVHTARRLGADGGLTTYQLTFADFTHFLKFRRDQRIWNDTTVDQIISDV 135 Query: 154 FDAHPQARGNYRFELATQALPRSYCTQYETDWHFAQRLMEEEGWYSYHEQKPDGSGHVLV 213 + HPQA+G++RF L+ RSY Q++TDWHF RLME+EG Y +Q DG H LV Sbjct: 136 LNQHPQAKGHFRFALSKPLPNRSYTRQHDTDWHFIHRLMEDEGLYCAWQQADDGKSHTLV 195 Query: 214 ITDNTHGLKPIKGEQAEFHTGGTADEAQKIVHWSASRSLSSSALATRTDDYR---APSAE 270 +TDN P+ + F+ GG A EA WS +R+L S +TRT DY+ PS Sbjct: 196 VTDNLQAFAPLSPQTVRFYRGGAASEADAFTQWSGTRTLQSVTRSTRTFDYKNPAQPSNP 255 Query: 271 KSTQLPVLADHGNLPDQLEVYEYTGAYSYDKQEQGDRQAKIRVEQWESSMKRFHGVSGVR 330 K T LP +A G LPDQLEVYEYTGAY+Y Q +GD KIR+EQWES KRFHG GVR Sbjct: 256 KGTSLPTMAGQGELPDQLEVYEYTGAYTYLDQTRGDHLTKIRMEQWESEAKRFHGAGGVR 315 Query: 331 SLECGRWFSLEGHPAHTQDPAEDRQFMLVAVEWFIENNLPLSNNVPEFPGSLKPALDRFK 390 +++ GR F+L HP H +DPA+ R+F + VEW+IENNLP+SN +FP SL+ AL + + Sbjct: 316 AIDAGRRFTLADHPEHDRDPADQREFAAIGVEWWIENNLPVSNGSADFPYSLREALTQAQ 375 Query: 391 ATISRLESSRTGENELT-GHCFNRFEVQRRKVPFRSPMEHPKPVMHPQTAVVVGPAGEEI 449 + R ++ + G E QR VP+RSP EH KP MH +TA+VVGP GEE+ Sbjct: 376 EGYGADPAFRVPHDDGSVGFYLVEVEAQRVNVPYRSPFEHKKPEMHLETAIVVGPQGEEV 435 Query: 450 YTDKLNRVKVRFRWDRQNPGDERASCWVRVSYPNAGENWGGVHVPRIRQELIISFLNGDP 509 YTD+LNR +V+F WDR NPG+E ASCWVRV + G +GGVHVPRI +E++I ++ GD Sbjct: 436 YTDELNRTRVQFVWDRLNPGNENASCWVRVVQSDTGGGYGGVHVPRIGEEVLIDYVGGDC 495 Query: 510 DRPVATGRLFNEEQAPQWHTDGRLSGLKSKEFGGSGFNQLVMDDTSNQNRLHLYSSHANA 569 DRP+A GR++N PQWH+DG LSG +SKE+ G G+NQLVMDD + QNR+ L SS AN+ Sbjct: 496 DRPLAVGRVYNGANQPQWHSDGILSGYRSKEYSGGGYNQLVMDDATGQNRVQLMSSSANS 555 Query: 570 QLNLGYLVRQVGNERQSFYGSGFSLNTDDYGAIVADKGLYLSTFARPGPHGTQLDTTEAT 629 L+LGY++ Q GN R S+ GSGF L +D YGA+ A +GLY++T + + LD EA Sbjct: 556 LLHLGYIIDQNGNARGSYLGSGFDLRSDAYGAVRASQGLYVTTHPK-AANSQPLDVKEAQ 614 Query: 630 NQLKAGAALTKNLSETASRAGAEPLAGSEE-LEALIDSTQDSYT---------EAGQSGA 679 QL AG +L + +S + + AE L +++ + A D+TQDS + G A Sbjct: 615 QQLVAGESLVEAMSGVSEQHQAESLKDAQDTMRAFTDATQDSQSGSAAGGRTAGGGTGNA 674 Query: 680 NRFKQSVLVAASPSGIGMTTPKGAHVHAGSEVTLSAGENTSIATGKSLLASAAEKISLFA 739 N FK+ V++ SPSGIGM+T + H+ A V +++G++ +A GKSL+ S +K+SLF Sbjct: 675 NAFKEPVMLFGSPSGIGMSTQQSVHMVANDHVNVASGQSVHVAAGKSLIGSIGQKLSLFV 734 Query: 740 FNAGAKLFAAKGKVEVQAQSDDLELIAEKVARLLSRNGRVEIHAKDEVIISAGGSFVKIN 799 NAG KLFA KGKVE+QAQSD++E+ A+K R++S R+EI A +++++GG +++I Sbjct: 735 QNAGMKLFAGKGKVEIQAQSDNIEVTAQKAVRVVSATDRIEIAADQGILLTSGGGYIRIK 794 Query: 800 ASGITQGTQGAWEAKAATHSMPGP---GWPV 827 I T GA + K A+H+ GP G+P+ Sbjct: 795 DGDIEIHTPGAVDVKGASHTFAGPASMGYPL 825 >ref|YP_622519.1| Rhs element Vgr protein [Burkholderia cenocepacia AU 1054] gb|ABF77546.1| Rhs element Vgr protein [Burkholderia cenocepacia AU 1054] Length = 1063 Score = 779 bits (2012), Expect = 0.0, Method: Composition-based stats. Identities = 394/811 (48%), Positives = 543/811 (66%), Gaps = 18/811 (2%) Query: 34 QGDRLLRIDSPLGTNALLPQRVVGRERLGRGYEYTVDVLATNNHIELKKLVAEPVTLWIK 93 Q DRLL++D+PLG+N L QR VGR R+GR YE+T+DVL+T++ +ELKKL+A+PVTLWI+ Sbjct: 16 QQDRLLKLDTPLGSNVLTVQRAVGRSRIGRAYEFTLDVLSTDSDLELKKLIAQPVTLWIQ 75 Query: 94 QSHRDYSPVHGYVHTARRLGSDGQVLFCQIVVVSWLNFLKYRKDARIWQDKTAEDILAEV 153 Q R Y P++GYVHTARRLG+DG + Q+ + +FLK+R+D RIW D T + I+++V Sbjct: 76 QGDRSYRPMNGYVHTARRLGADGGLTTYQLTFADFTHFLKFRRDQRIWNDTTVDQIISDV 135 Query: 154 FDAHPQARGNYRFELATQALPRSYCTQYETDWHFAQRLMEEEGWYSYHEQKPDGSGHVLV 213 + HPQA+G++RF L+ RSY Q++TDWHF RLME+EG Y +Q DG H LV Sbjct: 136 LNQHPQAKGHFRFALSKPLPNRSYTRQHDTDWHFIHRLMEDEGLYCAWQQADDGKSHTLV 195 Query: 214 ITDNTHGLKPIKGEQAEFHTGGTADEAQKIVHWSASRSLSSSALATRTDDYR---APSAE 270 +TDN P+ + F+ GG A EA WS +R+L S +TRT DY+ PS Sbjct: 196 VTDNLQAFAPLSPQTVRFYRGGAASEADAFTQWSGTRTLQSVTRSTRTFDYKNPAQPSNP 255 Query: 271 KSTQLPVLADHGNLPDQLEVYEYTGAYSYDKQEQGDRQAKIRVEQWESSMKRFHGVSGVR 330 K T LP +A G LPDQLEVYEYTGAY+Y Q +GD KIR+EQWES KRFHG GVR Sbjct: 256 KGTSLPTMAGQGELPDQLEVYEYTGAYTYLDQTRGDHLTKIRMEQWESEAKRFHGAGGVR 315 Query: 331 SLECGRWFSLEGHPAHTQDPAEDRQFMLVAVEWFIENNLPLSNNVPEFPGSLKPALDRFK 390 +++ GR F+L HP H +DPA+ R+F + VEW+IENNLP+SN +FP SL+ AL + + Sbjct: 316 AIDAGRRFTLADHPEHDRDPADQREFAAIGVEWWIENNLPVSNGSTDFPYSLREALTQAQ 375 Query: 391 ATISRLESSRTGENELT-GHCFNRFEVQRRKVPFRSPMEHPKPVMHPQTAVVVGPAGEEI 449 + R ++ + G E QR VP+RSP EH KP MH +TA+VVGP GEE+ Sbjct: 376 EGYGADPAFRVPHDDGSVGFYLVEVEAQRVNVPYRSPFEHKKPEMHLETAIVVGPQGEEV 435 Query: 450 YTDKLNRVKVRFRWDRQNPGDERASCWVRVSYPNAGENWGGVHVPRIRQELIISFLNGDP 509 YTD+LNR +V+F WDR NPG+E ASCWVRV + G +GGVHVPRI +E++I ++ GD Sbjct: 436 YTDELNRTRVQFVWDRLNPGNENASCWVRVVQSDTGGGYGGVHVPRIGEEVLIDYVGGDC 495 Query: 510 DRPVATGRLFNEEQAPQWHTDGRLSGLKSKEFGGSGFNQLVMDDTSNQNRLHLYSSHANA 569 DRP+A GR++N PQWH+DG LSG +SKE+ G G+NQLVMDD + QNR+ L SS AN+ Sbjct: 496 DRPLAVGRVYNGANQPQWHSDGILSGYRSKEYSGGGYNQLVMDDATGQNRVQLMSSSANS 555 Query: 570 QLNLGYLVRQVGNERQSFYGSGFSLNTDDYGAIVADKGLYLSTFARPGPHGTQLDTTEAT 629 L+LGY++ Q GN R S+ GSGF L +D YGA+ A +GLY++T + + LD EA Sbjct: 556 LLHLGYIIDQNGNARGSYLGSGFDLRSDAYGAVRASQGLYVTTHPK-AANSQPLDVKEAQ 614 Query: 630 NQLKAGAALTKNLSETASRAGAEPLAGSEE-LEALIDSTQDSYT---------EAGQSGA 679 QL AG +L + +S + + AE L +++ + A D+TQDS + G A Sbjct: 615 QQLVAGESLVEAMSGVSEQHQAESLKDAQDTMRAFTDATQDSQSGSAAGGRTAGGGTGNA 674 Query: 680 NRFKQSVLVAASPSGIGMTTPKGAHVHAGSEVTLSAGENTSIATGKSLLASAAEKISLFA 739 N FK+ V++ SPSGIGM+T + H+ A V +++G++ +A GKSL+ S +K+SLF Sbjct: 675 NAFKEPVMLFGSPSGIGMSTQQSVHMVANDHVNVASGQSVHVAAGKSLIGSIGQKLSLFV 734 Query: 740 FNAGAKLFAAKGKVEVQAQSDDLELIAEKVARLLSRNGRVEIHAKDEVIISAGGSFVKIN 799 NAG KLFA KGKVE+QAQSD++E+ A+K R++S R+EI A +++++GG +++I Sbjct: 735 QNAGMKLFAGKGKVEIQAQSDNIEVTAQKAVRVVSATDRIEIAADQGILLTSGGGYIRIK 794 Query: 800 ASGITQGTQGAWEAKAATHSMPGP---GWPV 827 I T GA + K A+H+ GP G+P+ Sbjct: 795 DGDIEIHTPGAVDVKGASHTFAGPASMGYPL 825