BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4498.p (534 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777699.1| hypothetical protein Hsero_4322 [Herbaspiril... 711 0.0 ref|YP_003041155.1| hypothetical protein PAU_02319 [Photorhabdus... 400 e-109 ref|NP_930479.1| hypothetical protein plu3252 [Photorhabdus lumi... 391 e-106 ref|NP_930463.1| hypothetical protein plu3236 [Photorhabdus lumi... 369 e-100 ref|YP_003041146.1| hypothetical protein PAU_02310 [Photorhabdus... 358 1e-96 >ref|YP_003777699.1| hypothetical protein Hsero_4322 [Herbaspirillum seropedicae SmR1] gb|ADJ65791.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 534 Score = 711 bits (1836), Expect = 0.0, Method: Composition-based stats. Identities = 343/537 (63%), Positives = 416/537 (77%), Gaps = 6/537 (1%) Query: 1 MTETSSERVLVPTYDSKGNPAWNSTMSTPDNSYAVCHIVPDRIIPIIFIPGVMGSNLKGI 60 M++ SER+L T+D KGNP W ST+S+PD+SYAVCH++PDR+IP+IF+PGVMGSNLKGI Sbjct: 1 MSKNKSERLLTATFDKKGNPEWKSTLSSPDDSYAVCHMIPDRVIPVIFVPGVMGSNLKGI 60 Query: 61 GTAKNIRWRLDGASSMLGWLTRGPIERKRYLTPETMTVDDGGTLPEGTSQHKDELKRRGW 120 G A +RWRLD SML WLTRGP +RKRYLTP+ M VDD GT P GT+QH +ELKRRGW Sbjct: 61 GDADGVRWRLDSEFSMLMWLTRGPAKRKRYLTPKKMVVDDDGTRPSGTAQHGEELKRRGW 120 Query: 121 GEVGAMSYAPFLVWLENALSDFSNPHGGERDRLIDRPIGASKGESALRKDEVALSYRYRF 180 GEVGAMSY FLVWLENAL+DF+N GG RD LI R +G+ K + AL K EVALSYRYRF Sbjct: 121 GEVGAMSYGDFLVWLENALNDFTNTKGGHRDLLIGRTLGSMKSDEALLKAEVALSYRYRF 180 Query: 181 PVHACGYNWLDSNAIAAKRLQQRINEVIARYKGERKQCEKVILVTHSMGGLVARYCSEVL 240 PVHA GYNWLDSN +AK+L++RIN VIARYK E+K+CEKVILVTHSMGGLVARYCSEVL Sbjct: 181 PVHAFGYNWLDSNDASAKQLRERINSVIARYKKEKKRCEKVILVTHSMGGLVARYCSEVL 240 Query: 241 GMSDKIFGIVHGVMPSIGAAAVYRRFKSGTEGDWIAAKILGEDAAEMTAVLSGAPGPLQL 300 GMSDKI GIVHGVMP+IGAAAVYRRFKSGTEG W+A K+LGEDAAEMTAVLS APGPLQL Sbjct: 241 GMSDKILGIVHGVMPAIGAAAVYRRFKSGTEGGWLATKVLGEDAAEMTAVLSSAPGPLQL 300 Query: 301 LPTQEYGNNWLKINDGKTVFSFPQRGDPYEEIYTIRGKWWSMCEEDLISPVVPALGQTKP 360 LPT EYGN WL+I+ G TV S P+ DPY EIYT+RG+WWSMCE+ LI+P L ++ Sbjct: 301 LPTPEYGNGWLRIDGGSTVVSLPRNNDPYYEIYTVRGRWWSMCEDHLITPRTTMLSASQK 360 Query: 361 QAKLDQDWIKFATIISERVETFHKSIQGKYHPNTYAFYGSSPRFLSYGTVMWKGGTTWGE 420 + ++D DW F+ +I+ +V+TFH+ I G+YHPNTYAF+GS F +YGTV W+ TT+ Sbjct: 361 R-EIDADWADFSDVINSKVKTFHQEITGEYHPNTYAFFGSDRHFKAYGTVQWR--TTFQS 417 Query: 421 ---TWFTSRKANTLNAKMTNEDNIHTSRSLAAPLEGEGWKKGVHQVFTISGPDENGDGTV 477 + +AK+ + +R+ P + ++VF IS PDE+GDGTV Sbjct: 418 PRRPPIPRPNKDVFDAKLNFYGELGETRTALYPHGMSAGQIAPNEVFRISEPDEDGDGTV 477 Query: 478 PHRSGIHPKDSPCVKSIVEVAVGHEPAYKDSRAAMQFTLRAIVRIAQAVKGTSLAYE 534 PHRSGI PK+ P +KS++ ++VGHE AYKDS A +FTLRAIV+I QAVKGT+L YE Sbjct: 478 PHRSGIAPKEHPGMKSLLRISVGHESAYKDSDIAREFTLRAIVQIVQAVKGTTLDYE 534 >ref|YP_003041155.1| hypothetical protein PAU_02319 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] emb|CAQ84411.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 536 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 240/555 (43%), Positives = 331/555 (59%), Gaps = 44/555 (7%) Query: 1 MTETSSERVLVPTYDSKGN---PAWNSTMSTPDNSYAVCHIVPDRIIPIIFIPGVMGSNL 57 MT++S + ++ P YD G P N+ ++ N A+C+ VP+R+IP+IF+PGVMGSNL Sbjct: 1 MTDSSEKVIVTPVYDEHGRLYYPLVNA--ASEKNLKAICYKVPNRVIPVIFLPGVMGSNL 58 Query: 58 KG-IGTAKNIRWRLDG-ASSMLGWLTRGPIERKRYLTPETMTVDDGGTLPEGTSQHKDEL 115 + GT+ WRL+ +++ WL +G +RK+ L PE VD G + + + Sbjct: 59 QDQKGTSV---WRLNSKVGALMDWLFKGAEDRKKLLDPENTFVDSRGRVDDNDKEGPKFP 115 Query: 116 KR--RGWGEVGAMSYAPFLVWLENALSDFSN------PHGGE---RDRLIDRPIGASKGE 164 R RGWG+V MSY FL WL+ AL D + + GE R +L + A GE Sbjct: 116 SREERGWGQVAYMSYGKFLPWLQAALDDQDDLLKNRLENNGEKTLRQQLEFMDLQAETGE 175 Query: 165 SALRKDEVALSYRYRFPVHACGYNWLDSNAIAAKRLQQRINEVIARYKGERKQCEKVILV 224 + L DE+ LSY+Y+FPVH GYNWL SNA +A +L I++V+ YK + CEKVILV Sbjct: 176 ARLTPDEIKLSYQYQFPVHVMGYNWLQSNAESANQLVSYIHQVVTGYKRRGQPCEKVILV 235 Query: 225 THSMGGLVARYCSEVLGMSDKIFGIVHGVMPSIGAAAVYRRFKSGTEGDWIAAKILGEDA 284 THSMGGLVAR+ SE+LG KI GIVHGVMP+ GA Y+R K+G +A ++G+D Sbjct: 236 THSMGGLVARHYSEILGRCTKILGIVHGVMPTFGAPTAYKRMKTGEAS--LAGLVIGKDG 293 Query: 285 AEMTAVLSGAPGPLQLLPTQEYGNNWLKINDGKTVFSFPQRGDPYEEIYTIRGKWWSMCE 344 A+ TAV++ +PGPLQLLP YG WLKI+DG T S P+R DPYEEIY R KWW +CE Sbjct: 294 AQFTAVMAQSPGPLQLLPGLGYGKWWLKIDDGNTRHSLPER-DPYEEIYLQRDKWWGLCE 352 Query: 345 EDLISPVVPALGQTKPQAKLDQDWIKFATIISERVETFHKSIQGKYHPNTYAFYGSSPRF 404 E I+P +TK +A + DW K+ ++ +V F + + G YH NTYAFYG+S ++ Sbjct: 353 ERFINPE----NKTKNRAVMQADWDKYHDLLLTQVRPFIEKLTGCYHSNTYAFYGNSTKY 408 Query: 405 LSYGTVMWKGGTTW------GETWFTSRKANTLNAKMTNEDNIHTSRSLAAPLEGEGWKK 458 SYGTV W + E F S + A+ ++ +RS+ P++ G Sbjct: 409 RSYGTVRWVARKDYFNRPSNPERAFNSPIFDPAGAEFSD------TRSVRYPMK-PGNDY 461 Query: 459 GVHQVFTISGPDENGDGTVPHRSGIHPKDSPCVKSIVEVAVGHEPAYKDSRAAMQFTLRA 518 + Q F I+ P E GDGTVP + G + ++SI+ V HE AY D+ FTLRA Sbjct: 462 SLIQTFAIADPQEPGDGTVPVQGGKF--TTIGLRSILGAEVEHENAY-DTDKTRFFTLRA 518 Query: 519 IVRIAQAVKGTSLAY 533 IV+IAQ++K TSLAY Sbjct: 519 IVKIAQSIKQTSLAY 533 >ref|NP_930479.1| hypothetical protein plu3252 [Photorhabdus luminescens subsp. laumondii TTO1] emb|CAE15626.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 536 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 237/556 (42%), Positives = 316/556 (56%), Gaps = 46/556 (8%) Query: 1 MTETSSERVLVPTYDSKGNPAWNSTMSTPDNS--YAVCHIVPDRIIPIIFIPGVMGSNLK 58 MT++S + V+ P YD G + +S P + A+C+ VP+R+IP+IF+PGVMGSNL+ Sbjct: 1 MTDSSEKVVVYPVYDEHGR-LYYPLVSAPSHKDLTAICYKVPNRVIPVIFLPGVMGSNLQ 59 Query: 59 G-IGTAKNIRWRLDGASSMLGWLTRGPIERKRYLTPETMTVDDGGTLPEGTSQHKDELK- 116 GT+ WRLDG SS L W RG RK+ L PE VD G + + HK+ K Sbjct: 60 DQYGTSV---WRLDGISSTLEWFIRGAETRKKLLDPENTVVDSRGKVDD---NHKEGPKF 113 Query: 117 ----RRGWGEVGAMSYAPFLVWLENALSDFSN------PHGGE---RDRLIDRPIGASKG 163 RGWG+ MSY FL WL+ AL D GE R +L + A G Sbjct: 114 PSRQERGWGQASYMSYGEFLPWLQAALDDQDELLFNRLNKTGELTLRQKLEFMDLQAETG 173 Query: 164 ESALRKDEVALSYRYRFPVHACGYNWLDSNAIAAKRLQQRINEVIARYKGERKQCEKVIL 223 E L E+ LSY+Y+FPVH GYNWL SNA +A +L + + ++I YK + CEKVIL Sbjct: 174 EEKLLSKEIKLSYQYQFPVHVMGYNWLQSNADSANQLAEHLIDIITHYKQRGQPCEKVIL 233 Query: 224 VTHSMGGLVARYCSEVLGMSDKIFGIVHGVMPSIGAAAVYRRFKSGTEGDWIAAKILGED 283 VTHSMGGLVAR+ SE L S KI GIVHGVMP+ GA Y+R K+G G ++G + Sbjct: 234 VTHSMGGLVARHYSEKLEGSKKILGIVHGVMPTYGAPTAYKRMKAGEGGG--VGLVIGSN 291 Query: 284 AAEMTAVLSGAPGPLQLLPTQEYGNNWLKINDGKTVFSFPQRGDPYEEIYTIRGKWWSMC 343 A+MT V++ +PGPLQLLP+ YG WL+I DGKT+++ P+R DPYEEIY R KWW +C Sbjct: 292 GAKMTPVMAQSPGPLQLLPSLRYGTGWLQIKDGKTLYTLPKR-DPYEEIYLQRDKWWGLC 350 Query: 344 EEDLISPVVPALGQTKPQAKLDQDWIKFATIISERVETFHKSIQGKYHPNTYAFYGSSPR 403 E+ LI+P + + + DW K+ I+S V+ F + + G YH NTYAFYG+S Sbjct: 351 EDRLINPT----NEKRNPVVMQADWKKYTHILSRVVQPFIEELTGCYHGNTYAFYGNSTE 406 Query: 404 FLSYGTVMWKGGTTWGETWFTSRKAN---TLNAKMTNEDNIHTS--RSLAAPLEGEGWKK 458 LSYG V W + + R + N + + N H S R + L+ Sbjct: 407 HLSYGVVRWTRRS------YVDRGDDPNLAFNRPVYDPFNNHLSDTRMVGYSLDPNKPDD 460 Query: 459 GVH-QVFTISGPDENGDGTVPHRSGIHPKDSPCVKSIVEVAVGHEPAYKDSRAAMQFTLR 517 H + F + P + GDGTVP + G ++SI+ V HE AY + FTLR Sbjct: 461 HSHLRAFILEKPQQPGDGTVPVQGGKFTAGG--LRSILGAEVDHEHAYNTDKTRF-FTLR 517 Query: 518 AIVRIAQAVKGTSLAY 533 AI++IAQ VK TSLAY Sbjct: 518 AIIKIAQLVKQTSLAY 533 >ref|NP_930463.1| hypothetical protein plu3236 [Photorhabdus luminescens subsp. laumondii TTO1] emb|CAE15610.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 538 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 222/549 (40%), Positives = 305/549 (55%), Gaps = 35/549 (6%) Query: 1 MTETSSERVLV-PTYDSKGNPAWN-STMSTPDNSYAVCHIVPDRIIPIIFIPGVMGSNLK 58 M+E + + P YD G P +N +N A C ++IP+IF+PGVMGSNLK Sbjct: 2 MSEPKENEIFIHPEYDELGLPYYNVPNARIEENLVATCLKYATKVIPVIFLPGVMGSNLK 61 Query: 59 GIGTAKNIRWRLDGASS--MLGWLTRGPIERKRYLTPETMTVDDGGTL-PEGTSQHK-DE 114 T WRL+ S +LGW+ G RK+ L P VDD G + P+ T ++K Sbjct: 62 S--TEGESVWRLNRILSFDVLGWMCSGASYRKKTLDPNKTKVDDSGDITPDHTEKNKFQT 119 Query: 115 LKRRGWGEVGAMSYAPFLVWLENALSD------FSNPHGGE---RDRLIDRPIGASKGES 165 K+RGWGE+ MSY FL WL+ L D + GE R R++D + A GE Sbjct: 120 CKQRGWGEIAHMSYGTFLPWLQAVLDDERLAFEYCLAEKGEKTLRQRMVDMSLNAEWGEE 179 Query: 166 ALRKDEVALSYRYRFPVHACGYNWLDSNAIAAKRLQQRINEVIARYKGERKQCEKVILVT 225 L + EV SY + +PVH GYNWL SN +AKRL+Q +++V+A Y G+R +KVILVT Sbjct: 180 PLTEAEVDHSYDFLYPVHVMGYNWLQSNEESAKRLEQYVDKVLAFY-GKRCATKKVILVT 238 Query: 226 HSMGGLVARYCSEVLGMSDKIFGIVHGVMPSIGAAAVYRRFKSGTEGDWIAAKILGEDAA 285 HSMGGLVARY SE+L DKI GIVHGVMP+ GA Y+R K+G +G + ++G D Sbjct: 239 HSMGGLVARYYSELLNGRDKILGIVHGVMPATGAPTTYKRMKTGEDG--VTGLVVGYDGE 296 Query: 286 EMTAVLSGAPGPLQLLPTQEYGNNWLKINDGKTVFSFPQRGDPYEEIYTIRGKWWSMCEE 345 +MT VL+ +PGPLQLLP +EYG WL I DGK P + DPYEEIY + +WW +CE Sbjct: 297 DMTPVLAQSPGPLQLLPGKEYGRGWLHIADGKMTHKLP-KSDPYEEIYLEKDRWWGLCET 355 Query: 346 DLISPVVPALGQTKPQAKLDQDWIKFATIISERVETFHKSIQGKYHPNTYAFYGSSPRFL 405 ++P K + K W + +I V+ F + + KYHPNTYAFYG+S + L Sbjct: 356 RFLNP------DKKDKWKDGASWNSYRKLIRNTVKPFIEELTSKYHPNTYAFYGASEKHL 409 Query: 406 SYGTVMWKGGTTWGETWFTSRKANTLNAKMTNEDNIHTSRSLAAPLE-GEGWKKGVHQVF 464 SYG + W+ + T + + + N+ T + G ++ + F Sbjct: 410 SYGVISWQEASKDYYNKTEDYSGLTFDRPIYDPYNLETGATRMVQFSVGPSFQDIAAKTF 469 Query: 465 TISGPDENGDGTVPHRSGIHPKDSPCVKSIVEVAVGHEPAYKDSRA-----AMQFTLRAI 519 ++ P E GDGTVP +SG + ++S++ V HE AYK A FTLR+I Sbjct: 470 KLAPPKEPGDGTVPVQSG--RIAARYLRSLLATEVDHEGAYKQDNETEETFARLFTLRSI 527 Query: 520 VRIAQAVKG 528 V++ QAVKG Sbjct: 528 VKMVQAVKG 536 >ref|YP_003041146.1| hypothetical protein PAU_02310 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] emb|CAR66772.1| Conserved Hypothetical Protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] emb|CAQ84402.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 536 Score = 358 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 213/548 (38%), Positives = 303/548 (55%), Gaps = 35/548 (6%) Query: 1 MTETSSERVLV-PTYDSKGNPAWN-STMSTPDNSYAVCHIVPDRIIPIIFIPGVMGSNLK 58 M+E + + P YD G+P +N T +N A C ++IP+IF+PGVMGSNLK Sbjct: 1 MSEPKENEIYIHPEYDELGSPYYNVPNARTEENLIATCLKYATKVIPVIFLPGVMGSNLK 60 Query: 59 GIGTAKNIRWRLDGASS--MLGWLTRGPIERKRYLTPETMTVDDGGTL-PEGTSQHK-DE 114 W L+ S +L W RG RK+ L P VDD G + P+ T ++K Sbjct: 61 S--KQGESVWLLNRILSFDVLAWTCRGASYRKKTLDPNKTEVDDSGAITPDHTEKNKFQT 118 Query: 115 LKRRGWGEVGAMSYAPFLVWLENALSD----FSNPHGGE-----RDRLIDRPIGASKGES 165 +RGWGE+ +SY FL WL++ L D F G+ R R++D + A GE Sbjct: 119 CSQRGWGEIAHISYGTFLPWLQSVLDDERLAFEYCLAGQGQQTLRQRMVDMNLNAEWGEE 178 Query: 166 ALRKDEVALSYRYRFPVHACGYNWLDSNAIAAKRLQQRINEVIARYKGERKQCEKVILVT 225 L + EV SY + +PVH GYNWL SN +AKRL + +++V+A Y G R KVILVT Sbjct: 179 PLTRPEVDHSYNFVYPVHVMGYNWLQSNVDSAKRLAKYVDKVLAFY-GRRCATNKVILVT 237 Query: 226 HSMGGLVARYCSEVLGMSDKIFGIVHGVMPSIGAAAVYRRFKSGTEGDWIAAKILGEDAA 285 HSMGGLVAR+ SE L DKI GIVHGVMP GA Y+R K+G +G I ++G + A Sbjct: 238 HSMGGLVARHYSEQLNGRDKILGIVHGVMPDTGAPTTYKRMKTGEDG--ITGLVIGSNGA 295 Query: 286 EMTAVLSGAPGPLQLLPTQEYGNNWLKINDGKTVFSFPQRGDPYEEIYTIRGKWWSMCEE 345 EMTAV++ +PGPLQLLP +YG WL I DGK + P+ DPY+EIY + +WW +CE Sbjct: 296 EMTAVMAQSPGPLQLLPGMKYGKRWLHIADGKIMHKLPE-SDPYKEIYLEKERWWGLCET 354 Query: 346 DLISPVVPALGQTKPQAKLDQDWIKFATIISERVETFHKSIQGKYHPNTYAFYGSSPRFL 405 ++P + + K ++ W K++ II V+ F + + G YH NTYAFYG+S + L Sbjct: 355 RFLNP------DKQDKWKDNESWEKYSAIIQNEVQQFIEELTGNYHSNTYAFYGASEKHL 408 Query: 406 SYGTVMWKGGTTWGETWFTSRKANTLNAKMTNEDNIHTSRSLAAPLEGEGWKKGVH-QVF 464 SYG + W+ T N + + ++ T + + +H + F Sbjct: 409 SYGVISWQEQDNGNYDKTEDYSGMTFNQPVYDPIDLKTGSTRIVRFSVGPLFRDIHDKTF 468 Query: 465 TISGPDENGDGTVPHRSGIHPKDSPCVKSIVEVAVGHEPAYKDSRAAMQ-----FTLRAI 519 ++ P E GDGTVP ++G + ++ ++ V HE AYK++ + FTLR+I Sbjct: 469 KLAPPREQGDGTVPIQAGRITYNG--LRGLLATEVDHEGAYKENNGTKETPARLFTLRSI 526 Query: 520 VRIAQAVK 527 V++ QAVK Sbjct: 527 VKMVQAVK 534