BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4497.p (368 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777700.1| hypothetical protein Hsero_4323 [Herbaspiril... 314 1e-83 gb|EGW61027.1| hypothetical protein DsuiDRAFT_01979 [Dechlorosom... 213 3e-53 gb|EGW61028.1| hypothetical protein DsuiDRAFT_01980 [Dechlorosom... 207 2e-51 ref|ZP_04633995.1| hypothetical protein yfred0001_31550 [Yersini... 125 1e-26 ref|YP_003041145.1| hypothetical protein PAU_02309 [Photorhabdus... 125 2e-26 >ref|YP_003777700.1| hypothetical protein Hsero_4323 [Herbaspirillum seropedicae SmR1] gb|ADJ65792.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 367 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 167/358 (46%), Positives = 230/358 (64%), Gaps = 3/358 (0%) Query: 11 LASILAAITLLAACQPNEPSMNPKEAQFMSEMTKNMSPRCFGRYLIDLPETFVLNSEGGQ 70 LA IL+A L P + KE Q M+ +T+ M PRCFGRYLIDLPE+FVLN+EGGQ Sbjct: 13 LALILSAFFLY---HRGTPELTAKETQKMNAITEKMIPRCFGRYLIDLPESFVLNTEGGQ 69 Query: 71 KVSDVTIEITPRSELEFKSLLNSRKQQLAAAKTYSTPQQPTLKTVTALPNAIGVVFDRAK 130 ++ VTI+I +SE EF+ L +RK+ L + P+ TLK + ALPN GV+F+RA+ Sbjct: 70 EIDGVTIDIKAQSETEFQRALEARKRVLESETLLVEPRTATLKEIVALPNRRGVIFNRAE 129 Query: 131 TPESNVPRTLELLDWKDGHEIRMSIDALDMSYAQRIFPGDIRKTDTTQKLEVLLDVYRRT 190 + +NV R LEL+DW+DG++I+M IDA D Y++ P + +++ LL VY RT Sbjct: 130 SEFNNVFRILELMDWRDGYQIKMKIDARDRHYSKEKLPAGTVISTVPERMATLLKVYHRT 189 Query: 191 SIRHDEIPAGQGICIINGFVAGPATQAEEVNFFYHLKTANDVFFNFSTVGGVREPDTLLD 250 R +EIP+GQGICI+NGFV GPA+ AE + FFYHL +DV+F +T+ G R+ DTLLD Sbjct: 190 RPRGNEIPSGQGICILNGFVEGPASSAESIRFFYHLNEVDDVYFTLATLSGPRDADTLLD 249 Query: 251 RLPDVKSVLAQNGGHIIRTGERKDAIPGQELLYTVPDEKTKRQTHTFVFEDTRRDAGAAT 310 R+ + + +GG +IR+G +PGQE+LY PDE TK F +EDTRR GA Sbjct: 250 RMKFLAPIWKTDGGRLIRSGRIYRELPGQEVLYMAPDEHTKIPALEFRYEDTRRGDGATN 309 Query: 311 PLVRIELNNGLPKPEPERPQKSDDNTEGLGKTATLTEAEALHLWDQVVRTVRPRPAAF 368 P + + +N G KPEP+ + T +L+EAEA+HLWD+V+ T+R RP AF Sbjct: 310 PSIEVGMNVGTRKPEPDPEDPDEHAYPPPIFTPSLSEAEAIHLWDKVLPTLRTRPGAF 367 >gb|EGW61027.1| hypothetical protein DsuiDRAFT_01979 [Dechlorosoma suillum PS] Length = 367 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 136/358 (37%), Positives = 194/358 (54%), Gaps = 18/358 (5%) Query: 23 ACQPNEPSMNPKEAQFMSEMTKNMSPRCFGRYLIDLPETFVLNSEGGQKVSDVTI-EITP 81 AC P P M P+E Q M+++T M+ RC GRYLIDLP+ FVLN K+ DV I +I P Sbjct: 16 ACAPEMPPMTPEETQRMNQLTSTMTTRCVGRYLIDLPDAFVLNEISTTKLEDVEILKIKP 75 Query: 82 RSELEFKSLLNSRKQQLAAAKTYSTPQQPTLKTVTAL-PNAIGVVFDRA-KTPESNVPRT 139 +++F+ LL R ++L A P P LK L P IG +F+RA +T ++ RT Sbjct: 76 MYKVDFQLLLEQRDRELKATHMDGEPSNPFLKKYEILPPGGIGKIFNRASETGSADFGRT 135 Query: 140 LELLDWKDGHEIRMSIDALD---MSYAQRI----FPGDIRKTDTTQKLEVLLDVYRRTSI 192 LEL+ WKDG+ +I+A D +YA + FP DI QK LLDVY R Sbjct: 136 LELMAWKDGYLFSATIEATDSTGTAYANKPWIKEFPNDI-----PQKRAHLLDVYNRLQG 190 Query: 193 RHD-EIPAGQGICIINGFVAGPATQAEEVNFFYHLKTANDVFFNFSTVGGV-REPDTLLD 250 R D E+P+G G+C NGF+ G AT E+++ YHLKT DV+F F + + E DTLL+ Sbjct: 191 RKDTEVPSGPGVCFPNGFLRGSATDHEQIDLHYHLKTVEDVYFGFHYLTDIGPEKDTLLE 250 Query: 251 RLPDVKSVLAQNGGHIIRTGERKDAIPGQELLYTVPDEKTKRQTHTFVFEDTRRDAGAAT 310 R ++ + Q GH +R G+R+ E +V + + + E + A Sbjct: 251 RGKAIEKSVKQYNGHTLRKGKREANGLSFEEWLSVQETDPGVKDYDLTLEMNSKHGDAYN 310 Query: 311 PLVRIELNNGLPKPEPERPQKSDDNTEGLGKTATLTEAEALHLWDQVVRTVRPRPAAF 368 PL + +G+ P P + + + K A+L EAE++ LWD+V T+RPRP AF Sbjct: 311 PLFITDFYSGVRHPRPTPSLEEVAVRKAIAK-ASLGEAESIALWDKVTTTLRPRPGAF 367 >gb|EGW61028.1| hypothetical protein DsuiDRAFT_01980 [Dechlorosoma suillum PS] Length = 367 Score = 207 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 132/354 (37%), Positives = 189/354 (53%), Gaps = 10/354 (2%) Query: 23 ACQPNEPSMNPKEAQFMSEMTKNMSPRCFGRYLIDLPETFVLNSEGGQKVSDVTI-EITP 81 AC P M +E Q M+++T M+ RC GRYLIDLPETFVLN K+ DV I +I P Sbjct: 16 ACAPEMTPMTLEETQRMNQLTATMTTRCIGRYLIDLPETFVLNEISTTKLEDVEILKIKP 75 Query: 82 RSELEFKSLLNSRKQQLAAAKTYSTPQQPTLKTVTALPNA-IGVVFDRA-KTPESNVPRT 139 +++F+ LL R +L A P P LK LP IG +F+RA ++ ++V R Sbjct: 76 MHKVDFQLLLERRDHELKATHMDGEPSNPFLKKYEMLPPGDIGKIFNRAYQSGAADVARV 135 Query: 140 LELLDWKDGHEIRMSIDALD---MSYAQRIFPGDIRKTDTTQKLEVLLDVYRRTSIRHD- 195 LEL+ WKDG+ + +I A D +Y + D QKL LLDVY R R D Sbjct: 136 LELMAWKDGYLLSATIRAKDSTGTAYENEPWAKS-SPNDVPQKLAHLLDVYNRLQGRKDT 194 Query: 196 EIPAGQGICIINGFVAGPATQAEEVNFFYHLKTANDVFFNFSTVGGVREPDTLLDRLPDV 255 E+P+G G+C NGF+ GPAT E+++ YHL + D +F+F ++ + + LLDR P + Sbjct: 195 EVPSGPGVCFPNGFLRGPATDHEQIDLHYHLSQSKDAYFSFHSLSDLVQETELLDRGPAI 254 Query: 256 KSVLAQNGGHIIRTGERKDAIP-GQELLYTVPDEKTKRQTHTFVFEDTRRDAGAATPLVR 314 + L Q G +R G+ IP QE L T E++ F E + A TP++ Sbjct: 255 EKALKQASGRTLRKGKVTGPIPSAQEWLLTRKSEESDLMLLDFTLEANAKAGSAQTPVLV 314 Query: 315 IELNNGLPKPEPERPQKSDDNTEGLGKTATLTEAEALHLWDQVVRTVRPRPAAF 368 ++ +G+ P P + + L + EAE++ LWD V T+RPRP AF Sbjct: 315 LDFVSGVEAPGPALTLEEVAVRKPL-SSKPFNEAESITLWDTVAPTLRPRPGAF 367 >ref|ZP_04633995.1| hypothetical protein yfred0001_31550 [Yersinia frederiksenii ATCC 33641] gb|EEQ13328.1| hypothetical protein yfred0001_31550 [Yersinia frederiksenii ATCC 33641] Length = 343 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 92/346 (26%), Positives = 156/346 (45%), Gaps = 26/346 (7%) Query: 31 MNPKEAQFMSEMTKNMSPRCFGRYLIDLPETFVLNSEGGQKVSDVTIEITPRSELEFKSL 90 + KE M + N+ RC GRYLIDLP ++ + K+ + I + F+ Sbjct: 13 LTDKEQVNMDNLLSNLQTRCIGRYLIDLPSSYSNSGNDLIKIKNSKIITNRIYQPAFEQY 72 Query: 91 LNSRKQQLAAAKTYSTPQQPTLKTVTALPNAI-GVVFDRAKTPE-SNVPRTLELLDWKDG 148 + R+Q+L A K+ S P LK LP+ + G++F+R + P + R LE + +G Sbjct: 73 IRLREQELLATKSTSNIDMPYLKNTYQLPHGLKGIIFERVENPNVDDAFRMLEAYLYSNG 132 Query: 149 H----EIRMSIDALDMSYAQRIFPGDIRKTDTTQKLEVLLDVYRRTSIRHDE-IPAGQGI 203 EI+++ D + R + T++++ L D+ R R++ IP G Sbjct: 133 VLIKIEIKLTNGMADRYKSDRSSYPTVYTDTTSERMSELNDLLVRIQGRNENVIPTMAGS 192 Query: 204 CIINGFVAGPATQAEEVNFFYHLKTANDVFFNFSTVGGVREPDTLLDRLPDVKSVLAQNG 263 CI N F+A + E ++ Y + + F S ++E D+LLDR +++ L N Sbjct: 193 CIPNAFIADNKSDQESIDTLYKSSNTSQLRFGVSINNYIQENDSLLDRSGEIEHNLLSND 252 Query: 264 GHIIRTGERK-DAIPGQELLYTVPDEKTKRQTHTFVFEDTRRDAGAATPLVRIELNNGLP 322 G+I+R G RK + + +ELL Q + F+ + G P+ +EL N Sbjct: 253 GYILRKGMRKINKLDTEELLAVGKYSSNDNQRYDFILITNEKVGGIKKPVFSLELLNDEL 312 Query: 323 KPEPERPQKSDDNTEGLGKTATLTEAEALHLWDQVVRTVRPRPAAF 368 P P ++ E ++ WD + +T+R RP AF Sbjct: 313 TPSP------------------YSQNEIVNFWDAISQTLRVRPGAF 340 >ref|YP_003041145.1| hypothetical protein PAU_02309 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] emb|CAR66773.1| Conserved Hypothetical Protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] emb|CAQ84401.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 372 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 103/362 (28%), Positives = 157/362 (43%), Gaps = 40/362 (11%) Query: 27 NEPSMNPKEAQFMSEMTKNMSPRCFGRYLIDLPETFVLNSEGGQKVSDVTIEITPRSELE 86 + P + KE + +EM NM RC GRYLIDLP F G + D IE E Sbjct: 28 DHPVLTEKEKKVTTEMLANMQTRCVGRYLIDLPAGFDNIVHDGISIGDARIETERLYPPE 87 Query: 87 FKSLLNSRKQQLAAAKTYSTPQQPTLKTVTALPNAI-GVVFDRAKTPESNVP---RTLEL 142 F+ + R+Q+L + + P LK V L + GV+FDR + +++VP R LE Sbjct: 88 FEHRIRLREQELKTMQYVNPKNMPFLKKVYRLQGDLNGVIFDRNQ--DTSVPGYARVLEA 145 Query: 143 LDWKDGHEIRMSIDALDM-----SYAQRIF-PGDIRKTDTTQKLEVLL---DVYRRTSIR 193 + +G +++ +++ SY + F + D K ++ D+ R S R Sbjct: 146 HFYNNGVAFTITMKFMELIDDKYSYQREGFIKAGFSERDLNTKDRTMMKMRDLLSRISGR 205 Query: 194 HD-EIPAGQGICIINGFVAGPATQAEEVNFFYHLKTANDVFFNFSTVGGVREPDTLLDRL 252 + EIP G CI +GF+AG + E++ F Y + F+ + ++E D LLDRL Sbjct: 206 KETEIPKVAGTCIPDGFIAGSDNEKEDITFVYQRNKDDHFNFSIEILNDLQEKDHLLDRL 265 Query: 253 PDVKSVLAQNGGHIIRTGERK-DAIPGQELLYTVPDEK-----TKRQTHTFVFEDTRRDA 306 ++ +L +IR G+R+ + +E+L T P E TK + F Sbjct: 266 KGMEGILLAMHAKVIRKGKREINGTYTEEVLTTAPVETNLEPGTKMPGYAFSLIANETAG 325 Query: 307 GAATPLVRIELNNGLPKPEPERPQKSDDNTEGLGKTATLTEAEALHLWDQVVRTVRPRPA 366 P V I+L N P +E E + WD V T R RP Sbjct: 326 DYKNPFVNIDLKNDRISATP------------------YSENELIAFWDAVTSTFRKRPG 367 Query: 367 AF 368 AF Sbjct: 368 AF 369