BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4496.p         (88 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777701.1| hypothetical protein Hsero_4324 [Herbaspiril...   121   3e-26
ref|YP_003774369.1| hypothetical protein Hsero_0944 [Herbaspiril...   109   2e-22
ref|YP_001861855.1| PAAR repeat-containing protein [Burkholderia...    88   6e-16
ref|YP_932815.1| hypothetical protein azo1311 [Azoarcus sp. BH72...    87   1e-15
ref|ZP_04625366.1| PAAR domain protein [Yersinia kristensenii AT...    86   2e-15

>ref|YP_003777701.1| hypothetical protein Hsero_4324 [Herbaspirillum seropedicae SmR1]
 gb|ADJ65793.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 88

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 70/88 (79%), Positives = 76/88 (86%)

Query: 1  MPLAIIRLGDPTSHGGKVISASQTHTVGGLGIARVGDYVSCPHKDHGVNPILEGVPTYLI 60
          MPL IIRLGD TSHGGKVISAS THT+ G+GIARVGD VSCP + HG  PI+EG PTYLI
Sbjct: 1  MPLPIIRLGDSTSHGGKVISASPTHTLHGIGIARVGDLVSCPREGHGTTPIIEGAPTYLI 60

Query: 61 GGRMVALHGHRAACGCTLISSLASASYG 88
          G RMVAL GHRAACGC+LISSLA+ASYG
Sbjct: 61 GDRMVALQGHRAACGCSLISSLATASYG 88


>ref|YP_003774369.1| hypothetical protein Hsero_0944 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62461.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 88

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 61/88 (69%), Positives = 73/88 (82%)

Query: 1  MPLAIIRLGDPTSHGGKVISASQTHTVGGLGIARVGDYVSCPHKDHGVNPILEGVPTYLI 60
          M  AIIRLGDPTSHGG+VI+AS TH +GGLG+ARVGD V CP   HGVN I+EG P++ I
Sbjct: 1  MAAAIIRLGDPTSHGGRVITASTTHLIGGLGVARVGDKVMCPLPGHGVNAIIEGAPSFQI 60

Query: 61 GGRMVALHGHRAACGCTLISSLASASYG 88
           GR VALHG RAACGCTL+S+LA+A++G
Sbjct: 61 DGRNVALHGQRAACGCTLVSTLATATHG 88


>ref|YP_001861855.1| PAAR repeat-containing protein [Burkholderia phymatum STM815]
 gb|ACC74809.1| PAAR repeat-containing protein [Burkholderia phymatum STM815]
          Length = 94

 Score = 87.8 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 50/86 (58%), Positives = 57/86 (66%), Gaps = 5/86 (5%)

Query: 1  MPLAIIRLGDPTSHGGKVISASQTHTVGGLGIARVGDYVSCPHK-----DHGVNPILEGV 55
          M L II  GD TSHGG VIS S+THT+ G  IAR+ D V CP K      HG+N I+E  
Sbjct: 1  MALPIIVFGDQTSHGGIVISGSETHTIDGKPIARLYDLVDCPQKYPDGRPHGINKIIEAH 60

Query: 56 PTYLIGGRMVALHGHRAACGCTLISS 81
          PT+ IGG  VALHGH+  CGCTLI S
Sbjct: 61 PTFTIGGEQVALHGHQTECGCTLIGS 86


>ref|YP_932815.1| hypothetical protein azo1311 [Azoarcus sp. BH72]
 emb|CAL93928.1| conserved hypothetical protein [Azoarcus sp. BH72]
          Length = 87

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/80 (58%), Positives = 61/80 (76%)

Query: 5  IIRLGDPTSHGGKVISASQTHTVGGLGIARVGDYVSCPHKDHGVNPILEGVPTYLIGGRM 64
          +IRLGDPT+HGG VISAS ++ V G  +ARVGD V+CP + HG+  I+EG P +LI GR 
Sbjct: 4  LIRLGDPTTHGGVVISASSSYEVLGRPVARVGDRVTCPMQGHGLAVIIEGDPDWLIDGRP 63

Query: 65 VALHGHRAACGCTLISSLAS 84
          VAL GH  +CG TLI+++AS
Sbjct: 64 VALEGHLTSCGATLIATVAS 83


>ref|ZP_04625366.1| PAAR domain protein [Yersinia kristensenii ATCC 33638]
 gb|EEP90101.1| PAAR domain protein [Yersinia kristensenii ATCC 33638]
          Length = 87

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/83 (55%), Positives = 57/83 (68%)

Query: 3  LAIIRLGDPTSHGGKVISASQTHTVGGLGIARVGDYVSCPHKDHGVNPILEGVPTYLIGG 62
          L IIR GD T+HGG V++AS T   GG+G+AR GD VSCP + HG   I+EG P YL  G
Sbjct: 2  LQIIRKGDKTTHGGSVMTASDTMKFGGIGVARKGDKVSCPIQGHGPTTIVEGNPDYLDNG 61

Query: 63 RMVALHGHRAACGCTLISSLASA 85
            VA HG++  CGCTL+SS  +A
Sbjct: 62 IPVAFHGYKCGCGCTLVSSFTAA 84