BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4493.p         (137 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002537356.1| conserved hypothetical protein [Ricinus comm...   167   4e-40
ref|YP_003774302.1| hypothetical protein Hsero_0877 [Herbaspiril...   162   2e-38

>ref|XP_002537356.1| conserved hypothetical protein [Ricinus communis]
 gb|EEF25027.1| conserved hypothetical protein [Ricinus communis]
          Length = 366

 Score =  167 bits (424), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 80/98 (81%), Positives = 86/98 (87%)

Query: 11  APASKPRDFVMQPPQALDRITFNTPDDGVLAGYVSVIRQHLGNGERFAWVELDNELAGQF 70
           A   K RDFV +PP+ LDRITFNTPDDG+L GYVSVIRQHLGNGERFAWVELDNE AG F
Sbjct: 258 AKQPKQRDFVTEPPRPLDRITFNTPDDGMLTGYVSVIRQHLGNGERFAWVELDNEPAGMF 317

Query: 71  RGVPLADIFTCDDAGDLRRNTPNREAKRLCLSDYSDKL 108
           RGVPLADI TCDDAGD RRNTPN EA+RLCLSDYS++L
Sbjct: 318 RGVPLADILTCDDAGDQRRNTPNSEARRLCLSDYSNRL 355


>ref|YP_003774302.1| hypothetical protein Hsero_0877 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62394.1| hypothetical protein Hsero_0877 [Herbaspirillum seropedicae SmR1]
          Length = 127

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 80/110 (72%), Positives = 90/110 (81%), Gaps = 1/110 (0%)

Query: 1   MNAPVKFDVIAPASKPRDFVMQPPQALDRITFNTPDDGVLAGYVSVIRQHLGNGERFAWV 60
           MN P KFD+IAP SK RDFVMQPPQ+LDRITFNTPDDGVLAGYVSVIRQHLGNGERFAWV
Sbjct: 1   MNIPAKFDLIAPDSKSRDFVMQPPQSLDRITFNTPDDGVLAGYVSVIRQHLGNGERFAWV 60

Query: 61  ELDNELAGQFRGVPLADIFTCDDAGDLRRNTP-NREAKRLCLSDYSDKLI 109
           ELDN L G FRGV LADI + DD G +RR+   NR  + LCL+D+S+  +
Sbjct: 61  ELDNALPGSFRGVSLADILSSDDCGSVRRHAELNRGDRSLCLADFSNVFV 110