BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4492.p (697 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774303.1| bacteriophage replication A protein [Herbasp... 1206 0.0 ref|ZP_02388567.1| hypothetical bacteriophage replication protei... 381 e-103 ref|YP_003775766.1| bacteriophage replication protein [Herbaspir... 380 e-103 ref|ZP_04899220.1| bacteriophage replication gene A protein (GpA... 375 e-101 ref|YP_111063.1| bacteriophage replication protein [Burkholderia... 375 e-101 >ref|YP_003774303.1| bacteriophage replication A protein [Herbaspirillum seropedicae SmR1] gb|ADJ62395.1| bacteriophage replication A protein [Herbaspirillum seropedicae SmR1] Length = 683 Score = 1206 bits (3120), Expect = 0.0, Method: Composition-based stats. Identities = 609/682 (89%), Positives = 642/682 (94%) Query: 15 MQSRTVDAKTRRRHRAFVESQQFAGELARIPLKWRGRVVSQALELMSVWHWNKIFEPVAV 74 MQSR VDAKTRR+H+AF ES QFA EL RIPLKWRGRVVS+ALELMSVWHW +IFEPVAV Sbjct: 1 MQSRKVDAKTRRQHKAFTESPQFAQELKRIPLKWRGRVVSEALELMSVWHWRRIFEPVAV 60 Query: 75 QFVREFAEQYVPAGVDLSQDDADICATAEKAAENVKEVLWKAISDTHARDLIEQECSDYG 134 FVREFA++YVPAG+DLSQDDADICATAE+AA+NVK++LWKAISDTHARD+IEQECSDYG Sbjct: 61 DFVREFADKYVPAGIDLSQDDADICATAERAADNVKKMLWKAISDTHARDIIEQECSDYG 120 Query: 135 IDMPEVDDDDLRAIIARVVDPRWWRRQLRKVVGRAFEGGNIRLGYVHYHGEPYASNDAVL 194 ID+PEVDDDDLRAIIARVVDPRWWRRQLRKVVGRAFEGGNIRLGYVHYHGEPYASNDAVL Sbjct: 121 IDVPEVDDDDLRAIIARVVDPRWWRRQLRKVVGRAFEGGNIRLGYVHYHGEPYASNDAVL 180 Query: 195 SRLAQNRRNAAALEATIVRNEAGQEFSIAELAEKTTANKTIRRGELMLRINGFEAIAKEC 254 +R+AQN+RNAAALEAT+VRNEAGQEFSIAELAEKTTANK IRRGELMLRINGFE IA++C Sbjct: 181 ARMAQNKRNAAALEATMVRNEAGQEFSIAELAEKTTANKAIRRGELMLRINGFEMIARDC 240 Query: 255 NDQGLFLTWSCPSRFHATLHTGKPNPKYDGSDPRTANKYLGKMTALARSALARRGIGLYG 314 D GLFLTWSCPSRFH TLH+GKPNPKYDGSDPRTANKYLGK+TALARSALARRGIGLYG Sbjct: 241 GDTGLFLTWSCPSRFHRTLHSGKPNPKYDGSDPRTANKYLGKVTALARSALARRGIGLYG 300 Query: 315 FRIAEPHHDGCPHWHMLVFVRALQDYTTPHVKDVASRAIRVMKRYAWRVDRGEPGAFKRR 374 FRIAEPHHDGCPHWHMLVFVRAL YTTPHVKDVASRAIRVMKRYAWRVDRGEPG+FKRR Sbjct: 301 FRIAEPHHDGCPHWHMLVFVRALPGYTTPHVKDVASRAIRVMKRYAWRVDRGEPGSFKRR 360 Query: 375 LDVKRIDWAKGSAAGYIAKYVAKNIDGVADHKTKEGYLITTDMAGDRELTPSARVEAWAA 434 LDVKRIDWAKGSAAGYIAKYVAKNIDGVADHKTKEGY++TTD AGD ELTPSARVEAWAA Sbjct: 361 LDVKRIDWAKGSAAGYIAKYVAKNIDGVADHKTKEGYVVTTDTAGDYELTPSARVEAWAA 420 Query: 435 RWGIRQFQQWGGAPVSVWRELRRVPADMLTEAPPAMAAAWNAVQKVEGEKRACWASYLRA 494 RWGIRQFQQWGGAPVS+WRELRRVPADM+ EAPPAMAAAW+AVQKVEGEKRACWASYLRA Sbjct: 421 RWGIRQFQQWGGAPVSIWRELRRVPADMMQEAPPAMAAAWDAVQKVEGEKRACWASYLRA 480 Query: 495 QGGAIVKRDDLMVTLAKETKTVSGRYEECERVMPYGVQCRQMVGVVFKSVRHTWTPVQGH 554 QGGA+VKRDDLMVTLAKETKTV+GRYEE ERVMPYGVQCRQM GVVFKSVRHTW P+QG Sbjct: 481 QGGALVKRDDLMVTLAKETKTVAGRYEERERVMPYGVQCRQMAGVVFKSVRHTWIPIQGT 540 Query: 555 DARASAGSGFPWTRVNNCTRPAGTDFEADASFASKAAPVPVMFKPDQAAQIDHAWLALGA 614 +ARASAG GFPWTRVNNCT+PA T F AD SF K AP PVMFKPDQAAQIDHAWLALGA Sbjct: 541 EARASAGLGFPWTRVNNCTQPAVTGFAADVSFDPKTAPAPVMFKPDQAAQIDHAWLALGA 600 Query: 615 CPWPRPVVDDIPTWPASAMTADEQRRALAAWDAIKACPWPRMVPAPDKSPRLGTPRQVAD 674 CPWPRP VDD P WPA MTA+EQRRALA WDAIKACPWPRM P PDKSPR GTPRQVAD Sbjct: 601 CPWPRPAVDDRPAWPAPDMTAEEQRRALADWDAIKACPWPRMAPVPDKSPRYGTPRQVAD 660 Query: 675 WRAGRLDVSELPIDPNPTKGNA 696 WRAGRLDV ELPIDPNPTKGNA Sbjct: 661 WRAGRLDVGELPIDPNPTKGNA 682 >ref|ZP_02388567.1| hypothetical bacteriophage replication protein [Burkholderia thailandensis Bt4] ref|ZP_02493648.1| hypothetical bacteriophage replication protein [Burkholderia pseudomallei NCTC 13177] Length = 597 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 239/539 (44%), Positives = 313/539 (58%), Gaps = 45/539 (8%) Query: 73 AVQFVREFAEQYVPAGVDLSQD--DADICATAEKAAENVKEVLWKAISDTHARDLIEQEC 130 A + +REF +++ P + D D +IC A + A +V + +S A + E C Sbjct: 65 AARAIREFLDEHAPDSFPVRPDANDFEICLKARRIANDV-SLRSHGLSILDAHIVAENAC 123 Query: 131 SDYGIDMPEVDDDDLRAIIARVVDPRWWRRQLRKVVGRAFEGGNIRLGYVHYHGEPYASN 190 + YG+D+P + R +ARV WWRRQLRK+ RA E NIRL YVH EPYAS+ Sbjct: 124 AMYGVDLPNFEHPAER--VARVRCELWWRRQLRKMHIRALEFSNIRLHYVHRRAEPYASD 181 Query: 191 DAVLSRLAQNRRNAAALEATIVRNEAGQEFSIAELAEKTTANKTIRRGELMLRINGFEAI 250 DAV R+AQNRRNA LE+ + NE GQ+F++AELA K +NK ++RGEL R+ G E + Sbjct: 182 DAVRRRVAQNRRNARTLESVTMENEVGQQFTLAELAAKGISNKAMKRGELFTRLRGLEEL 241 Query: 251 AKECNDQGLFLTWSCPSRFHATLHTG---KPNPKYDGSDPRTANKYLGKMTALARSALAR 307 A + +G+ T +CPSRFHA T +PNP+YD DPR A YL K+ R+ L R Sbjct: 242 ADDAKFRGVMFTLTCPSRFHAVTTTDSWVRPNPRYDDVDPRAAQAYLRKVWQRTRAELKR 301 Query: 308 RGIGLYGFRIAEPHHDGCPHWHMLVFVRALQDYTTPHVKDVASRAIRVMKRYAWRVDRGE 367 GI +G R+AEP+HDG PHWH LVF D R VM+++ R E Sbjct: 302 EGIVYFGMRVAEPNHDGTPHWHGLVFA------------DKIERFCSVMRKHGLRDSGDE 349 Query: 368 PGAFKRRLDVKRIDWAKGSAAGYIAKYVAKNIDG--VADHKTKEGYLITTDMAGDRELTP 425 PGA + R+ + ID AKGSA GY+AKY++KNIDG V +HKT++GY+I DM E+TP Sbjct: 350 PGAQRHRVRFEMIDRAKGSAVGYVAKYISKNIDGHAVGEHKTQDGYVIQADMWDGDEITP 409 Query: 426 SARVEAWAARWGIRQFQQWGGAPVSVWRELRRVP-ADMLTEA-PPAMAAAWNAVQKVEGE 483 S RVEAWAA WGIRQFQQ+GGAPV VWRELRRV D+ +EA P + AAW A QK + E Sbjct: 410 SQRVEAWAALWGIRQFQQFGGAPVGVWRELRRVKEEDLPSEAESPQIRAAWAAAQKTD-E 468 Query: 484 KRACWASYLRAQGGAIVKRDDLMVTLAKETKTVSGRYEECERVMPYGVQCRQMVGVV--- 540 + A WA+Y RA GG + + MV + + GRY +P+GV+ + +V Sbjct: 469 RPADWAAYSRAMGG--IAGETRMVYVRYTIEQREGRYGIGPVRVPHGVEALGVAHIVDGL 526 Query: 541 ----------FKSVRHTWTPVQGHDARASAGSGFPWTRVNNCTRPAGTDFEADASFASK 589 S RH W V R G+ PWTRVNNCTR G A A+ A + Sbjct: 527 CPYSRETKIFVPSTRHEWRVV-----RRGGGAARPWTRVNNCTRDGGPGVAATAAEAVR 580 >ref|YP_003775766.1| bacteriophage replication protein [Herbaspirillum seropedicae SmR1] gb|ADJ63858.1| bacteriophage replication protein [Herbaspirillum seropedicae SmR1] Length = 592 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 225/500 (45%), Positives = 295/500 (59%), Gaps = 25/500 (5%) Query: 82 EQYVPAGVDLSQDDADICATAEKAAENVKEVLWKAISDTHARDLIEQECSDYGIDMPEVD 141 ++ A + L D+ +C A ++ + + R ++ C G+ P VD Sbjct: 52 DEITAAPIPLDATDSQLCVAALHRSQECMSMSGRIHDKAALRQRMQAMCDQQGVPAPGVD 111 Query: 142 DDDLRAIIARVVDPRWWRRQLRKVVGRAFEGGNIRLGYVHYHGEPYASNDAVLSRLAQNR 201 DD IAR DP WWRRQ RKV GR FE +RLG V YAS++ VL RL QNR Sbjct: 112 DD--VQFIARCCDPAWWRRQFRKVFGRTFEHAAVRLGLVSVRAGAYASDETVLRRLDQNR 169 Query: 202 RNAAALEATIVRNEAGQEFSIAELAEKTTANKTIRRGELMLRINGFEAIAKECNDQGLFL 261 RNA L++ + N+ GQE+++A+L K+ AN+ +RRGELMLR+ G E IA E G+F+ Sbjct: 170 RNAKILDSVQMANDQGQEYALADLVAKSVANRKVRRGELMLRMRGCEEIANELGHVGVFV 229 Query: 262 TWSCPSRFHATL-HTGKPNPKYDGSDPRTANKYLGKMTALARSALARRGIGLYGFRIAEP 320 T +CPS+FHA L +G NP Y+ + R A+ YL + R+A AR+ + YGFRIAEP Sbjct: 230 TLTCPSKFHAVLAQSGTANPNYNDATAREAHAYLQTVWQRIRAAYARQDVQPYGFRIAEP 289 Query: 321 HHDGCPHWHMLVFVRALQDYTTPHVKDVASRAIRVMKRYAWRVDRGEPGAFKRRLDVKRI 380 HHDGCPHWHML+F+ KD A I MK YA D EPGA + R+ + RI Sbjct: 290 HHDGCPHWHMLLFI----------AKDDAQVFIDTMKEYALAEDGDEPGAKRNRVKIVRI 339 Query: 381 DWAKGSAAGYIAKYVAKNIDG--VADHKTKEGYLITTDMAGDRELTPSARVEAWAARWGI 438 + KG+AAGYIAKYV KNID V +HK ++G +I D+ GD + P RVEAWAA WGI Sbjct: 340 EAGKGTAAGYIAKYVGKNIDDEHVPEHKARDGAVIEKDLIGDEVIRPCQRVEAWAACWGI 399 Query: 439 RQFQQWGGAPVSVWRELRRVPADMLTEAPPAMAAAWNAVQKVEGEKRACWASYLRAQGGA 498 RQFQ G PV+VWRELRRV AD + A + A AVQK E EK A +A+Y+RAQGG Sbjct: 400 RQFQAIGQPPVTVWRELRRVAADKVEGASEHVRQAHAAVQKTE-EKSADFAAYIRAQGGT 458 Query: 499 IVKRDDLMVTLAKETKTVSGRYEECERVMPYGV--QCRQMVGVVFKSVRHTWTPVQGHDA 556 + R + ++ +AKE +TV G+Y E P G+ + R G ++ S R+ W V A Sbjct: 459 GIGR-NYLIAVAKEVRTVQGKYGVYEGEKPTGIFDRARPEAG-IYASTRYEWRVVGKMRA 516 Query: 557 RASAGSGFPWTRVNNCTRPA 576 PWTRVNNCT PA Sbjct: 517 -----VDVPWTRVNNCTPPA 531 >ref|ZP_04899220.1| bacteriophage replication gene A protein (GpA) [Burkholderia pseudomallei S13] gb|EDS82232.1| bacteriophage replication gene A protein (GpA) [Burkholderia pseudomallei S13] Length = 597 Score = 375 bits (964), Expect = e-101, Method: Composition-based stats. Identities = 232/524 (44%), Positives = 303/524 (57%), Gaps = 45/524 (8%) Query: 73 AVQFVREFAEQYVPAGVDLSQD--DADICATAEKAAENVKEVLWKAISDTHARDLIEQEC 130 A + +REF +++ P + D D +IC A + A +V + +S A + E C Sbjct: 65 AARAIREFLDEHAPDSFPVRPDANDFEICLKARRIANDV-SLRSHGLSILDAHIVAENAC 123 Query: 131 SDYGIDMPEVDDDDLRAIIARVVDPRWWRRQLRKVVGRAFEGGNIRLGYVHYHGEPYASN 190 + YG+D+P + R +ARV WWRRQLRK+ RA E NIRL YVH EPYAS+ Sbjct: 124 AMYGVDLPNFEHPAER--VARVRCELWWRRQLRKMHIRALEFSNIRLHYVHRRAEPYASD 181 Query: 191 DAVLSRLAQNRRNAAALEATIVRNEAGQEFSIAELAEKTTANKTIRRGELMLRINGFEAI 250 DAV R+AQNRRNA LE+ + NE GQ+F++AELA K +NK ++RGEL R+ G E + Sbjct: 182 DAVRRRVAQNRRNARTLESVTMENEVGQQFTLAELAAKGISNKAMKRGELFTRLRGLEEL 241 Query: 251 AKECNDQGLFLTWSCPSRFHATLHTG---KPNPKYDGSDPRTANKYLGKMTALARSALAR 307 A + +G+ T +CPSRFHA T +PNP+YD DPR A YL K+ R+ L R Sbjct: 242 ADDAKFRGVMFTLTCPSRFHAVTTTDSWVRPNPRYDDVDPRAAQAYLRKVWQRTRAELKR 301 Query: 308 RGIGLYGFRIAEPHHDGCPHWHMLVFVRALQDYTTPHVKDVASRAIRVMKRYAWRVDRGE 367 GI +G R+AEP+HDG PHWH LVF D R VM+++ R E Sbjct: 302 EGIVYFGMRVAEPNHDGTPHWHGLVFA------------DKIERFCSVMRKHGLRDSGDE 349 Query: 368 PGAFKRRLDVKRIDWAKGSAAGYIAKYVAKNIDG--VADHKTKEGYLITTDMAGDRELTP 425 PGA + R+ + ID AKGSA GY+AKY++KNIDG V +HKT++GY+I DM E+TP Sbjct: 350 PGAQRHRVRFEMIDRAKGSAVGYVAKYISKNIDGHAVGEHKTQDGYVIQADMWDGDEITP 409 Query: 426 SARVEAWAARWGIRQFQQWGGAPVSVWRELRRVPADML--TEAPPAMAAAWNAVQKVEGE 483 S RVEAWAA WGIRQFQQ+GGAPV VWRELRRV + L + P + AAW A QK + E Sbjct: 410 SQRVEAWAALWGIRQFQQFGGAPVGVWRELRRVKEEDLPSEDEAPCIRAAWTAAQKTD-E 468 Query: 484 KRACWASYLRAQGGAIVKRDDLMVTLAKETKTVSGRYEECERVMPYGVQCRQMVGVV--- 540 A WA Y RA GG + + +V + + GRY +P+GV+ + +V Sbjct: 469 HAADWAEYSRAMGG--IAGEARIVYVRHTVEQREGRYGIGPVRVPHGVEALGVAHIVDGL 526 Query: 541 ----------FKSVRHTWTPVQGHDARASAGSGFPWTRVNNCTR 574 S RH W V R G+ PWTRVNNCTR Sbjct: 527 CPYSRETKIFVPSTRHEWRVV-----RRGGGAARPWTRVNNCTR 565 >ref|YP_111063.1| bacteriophage replication protein [Burkholderia pseudomallei K96243] ref|YP_001111165.1| gp15, hypothetical replication protein [Burkholderia phage phiE12-2] ref|ZP_02501867.1| hypothetical bacteriophage replication protein [Burkholderia pseudomallei 112] emb|CAH38518.1| hypothetical bacteriophage replication protein [Burkholderia pseudomallei K96243] gb|ABO60752.1| gp15, hypothetical replication protein [Burkholderia phage phiE12-2] Length = 597 Score = 375 bits (964), Expect = e-101, Method: Composition-based stats. Identities = 232/524 (44%), Positives = 303/524 (57%), Gaps = 45/524 (8%) Query: 73 AVQFVREFAEQYVPAGVDLSQD--DADICATAEKAAENVKEVLWKAISDTHARDLIEQEC 130 A + +REF +++ P + D D +IC A + A +V + +S A + E C Sbjct: 65 AARAIREFLDEHAPDSFPVRPDANDFEICLKARRIANDV-SLRSHGLSILDAHIVAENAC 123 Query: 131 SDYGIDMPEVDDDDLRAIIARVVDPRWWRRQLRKVVGRAFEGGNIRLGYVHYHGEPYASN 190 + YG+D+P + R +ARV WWRRQLRK+ RA E NIRL YVH EPYAS+ Sbjct: 124 AMYGVDLPNFEHPAER--VARVRCELWWRRQLRKMHIRALEFSNIRLHYVHRRAEPYASD 181 Query: 191 DAVLSRLAQNRRNAAALEATIVRNEAGQEFSIAELAEKTTANKTIRRGELMLRINGFEAI 250 DAV R+AQNRRNA LE+ + NE GQ+F++AELA K +NK ++RGEL R+ G E + Sbjct: 182 DAVRRRVAQNRRNARTLESVTMENEVGQQFTLAELAAKGISNKAMKRGELFTRLRGLEEL 241 Query: 251 AKECNDQGLFLTWSCPSRFHATLHTG---KPNPKYDGSDPRTANKYLGKMTALARSALAR 307 A + +G+ T +CPSRFHA T +PNP+YD DPR A YL K+ R+ L R Sbjct: 242 ADDAKFRGVMFTLTCPSRFHAVTTTDSWVRPNPRYDDVDPRAAQAYLRKVWQRTRAELKR 301 Query: 308 RGIGLYGFRIAEPHHDGCPHWHMLVFVRALQDYTTPHVKDVASRAIRVMKRYAWRVDRGE 367 GI +G R+AEP+HDG PHWH LVF D R VM+++ R E Sbjct: 302 EGIVYFGMRVAEPNHDGTPHWHGLVFA------------DKIERFCSVMRKHGLRDSGDE 349 Query: 368 PGAFKRRLDVKRIDWAKGSAAGYIAKYVAKNIDG--VADHKTKEGYLITTDMAGDRELTP 425 PGA + R+ + ID AKGSA GY+AKY++KNIDG V +HKT++GY+I DM E+TP Sbjct: 350 PGAQRHRVRFEMIDRAKGSAVGYVAKYISKNIDGHAVGEHKTQDGYVIQADMWDGDEITP 409 Query: 426 SARVEAWAARWGIRQFQQWGGAPVSVWRELRRVPADML--TEAPPAMAAAWNAVQKVEGE 483 S RVEAWAA WGIRQFQQ+GGAPV VWRELRRV + L + P + AAW A QK + E Sbjct: 410 SQRVEAWAALWGIRQFQQFGGAPVGVWRELRRVKEEDLPSEDEAPCIRAAWTAAQKTD-E 468 Query: 484 KRACWASYLRAQGGAIVKRDDLMVTLAKETKTVSGRYEECERVMPYGVQCRQMVGVV--- 540 A WA Y RA GG + + +V + + GRY +P+GV+ + +V Sbjct: 469 HAADWAEYSRAMGG--IAGEARIVYVRHTVEQREGRYGIGPVRVPHGVEALGVAHIVDGL 526 Query: 541 ----------FKSVRHTWTPVQGHDARASAGSGFPWTRVNNCTR 574 S RH W V R G+ PWTRVNNCTR Sbjct: 527 CPYSRETKIFVPSTRHEWRVV-----RRGGGAARPWTRVNNCTR 565