BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4486.p         (148 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774307.1| DNA-binding repressor transcription regulato...   123   9e-27
ref|YP_620199.1| XRE family transcriptional regulator [Burkholde...   109   1e-22
ref|YP_002232315.1| putative phage-related regulator [Burkholder...   108   3e-22
ref|YP_001764066.1| Cro/CI family transcriptional regulator [Bur...   105   3e-21
ref|ZP_02905730.1| transcriptional regulator, XRE family [Burkho...   101   3e-20

>ref|YP_003774307.1| DNA-binding repressor transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
 gb|ADJ62399.1| DNA-binding repressor transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 145

 Score =  123 bits (309), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 65/146 (44%), Positives = 97/146 (66%), Gaps = 3/146 (2%)

Query: 1   MSDFSDRLKEERKRLGLNQEEFAALGGVKKGAQFNYENGSRAPDTDYLFSIALAGVDLVY 60
           +S F +RLK ER RLG +QE FAA+GGV+K AQ +YE G   PD  ++ +++  GVD+ Y
Sbjct: 3   ISPFGERLKSERLRLGFSQEAFAAVGGVRKQAQISYEQGKTLPDIGFMAAVSKIGVDVSY 62

Query: 61  LMTGEPSASTMSDDENELLAGYRKLDLRAKARVLGVVEGASDADTLPSAPKNRSNITIHG 120
           ++ G P+A  ++ DE ++L G+R+LD+  KARVLGV+EGA+ A+   +  KN ++IT+ G
Sbjct: 63  VIFGIPTADALTSDEQQVLQGFRRLDIIGKARVLGVIEGAAPAE---AGRKNAAHITVGG 119

Query: 121 GVGQQIHGETFKKVVGPQMVKAPSKK 146
            +GQ I G+    + GP M     KK
Sbjct: 120 SIGQHITGDIHGTLQGPVMGNKIKKK 145


>ref|YP_620199.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 ref|YP_834443.1| XRE family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gb|ABF75226.1| transcriptional regulator, XRE family [Burkholderia cenocepacia AU
           1054]
 gb|ABK07550.1| transcriptional regulator, XRE family [Burkholderia cenocepacia
           HI2424]
          Length = 116

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 54/102 (52%), Positives = 72/102 (70%)

Query: 1   MSDFSDRLKEERKRLGLNQEEFAALGGVKKGAQFNYENGSRAPDTDYLFSIALAGVDLVY 60
           M+DF  RLK ER RLGLNQ E A LGGV+K AQF YE G R P++DYL +IALAGVD+ Y
Sbjct: 11  MNDFEVRLKRERLRLGLNQTELAVLGGVQKHAQFQYEKGMRRPNSDYLSAIALAGVDVWY 70

Query: 61  LMTGEPSASTMSDDENELLAGYRKLDLRAKARVLGVVEGASD 102
           ++TGE  A   S DE  +++G+R LD R +  +L ++E  ++
Sbjct: 71  VLTGEEGARLESPDEQRIVSGFRALDARKREVILALIEAITE 112


>ref|YP_002232315.1| putative phage-related regulator [Burkholderia cenocepacia J2315]
 emb|CAR53530.1| putative phage-related regulator [Burkholderia cenocepacia J2315]
          Length = 106

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 54/102 (52%), Positives = 73/102 (71%)

Query: 1   MSDFSDRLKEERKRLGLNQEEFAALGGVKKGAQFNYENGSRAPDTDYLFSIALAGVDLVY 60
           M+DF  RLK ER RLGLNQ E AALGGV+K AQF YE G R P++DYL +IALAGVD+ Y
Sbjct: 1   MNDFEVRLKRERLRLGLNQTELAALGGVQKHAQFQYEKGMRRPNSDYLSAIALAGVDVWY 60

Query: 61  LMTGEPSASTMSDDENELLAGYRKLDLRAKARVLGVVEGASD 102
           ++TGE  A   + DE  +++G+R LD R +  +L ++E  ++
Sbjct: 61  VLTGEEGARLENPDEQRIVSGFRALDARKREVILALIEAITE 102


>ref|YP_001764066.1| Cro/CI family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gb|ACA89944.1| transcriptional regulator, Cro/CI family [Burkholderia cenocepacia
           MC0-3]
          Length = 106

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 53/102 (51%), Positives = 73/102 (71%)

Query: 1   MSDFSDRLKEERKRLGLNQEEFAALGGVKKGAQFNYENGSRAPDTDYLFSIALAGVDLVY 60
           M  F +RLK ER RLGLNQ EFAALG VK+ AQ+ YE G R P++DYL +IALAGVD+ Y
Sbjct: 1   MDVFGERLKCERVRLGLNQTEFAALGAVKQRAQYQYEKGLRRPNSDYLRAIALAGVDVWY 60

Query: 61  LMTGEPSASTMSDDENELLAGYRKLDLRAKARVLGVVEGASD 102
           ++TGE SA   + DE  +++G+R LD R +  +L ++E  ++
Sbjct: 61  VLTGEESARLENLDERRIVSGFRALDARKREVILALIEAIAE 102


>ref|ZP_02905730.1| transcriptional regulator, XRE family [Burkholderia ambifaria
           MEX-5]
 gb|EDT43152.1| transcriptional regulator, XRE family [Burkholderia ambifaria
           MEX-5]
          Length = 152

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 68/155 (43%), Positives = 90/155 (58%), Gaps = 14/155 (9%)

Query: 1   MSDFSDRLKEERKRLGLNQEEFAALGGVKKGAQFNYENGSRAPDTDYLFSIALAGVDLVY 60
           M  F +RLK ERKRLGL Q E A   G    AQ  YE+G R+PD  YL ++A AGVD++Y
Sbjct: 1   MEIFGERLKAERKRLGLKQAELADRAGTTNVAQSRYESGDRSPDWGYLSAVAQAGVDVLY 60

Query: 61  LMTGEPSASTMSDDENELLAGYRKLDLRAKARVLGVVEGASDADTLPSAPKNRSNITIH- 119
           ++TG+ S   +S DE+ LLAGYR LD + +A VLG++ G +   T  +AP  +   T+H 
Sbjct: 61  VLTGQHSTLELSADEHVLLAGYRSLDAQGRAGVLGMIGGMTQPVT--AAPSAKKATTVHQ 118

Query: 120 ----GGVGQQIHGETFKKVVGP---QMVKAPSKKK 147
                 VGQ + G+    V GP    M  A  KKK
Sbjct: 119 NFQGASVGQHVTGD----VTGPFSINMSGAGRKKK 149