BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4485.p         (173 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774308.1| phage-encoded membrane protein [Herbaspirill...   159   2e-37
ref|YP_001165282.1| hypothetical protein RPRSA1_gp33 [Ralstonia ...    63   1e-08
gb|AEG69144.1| conserved hypothetical protein [Ralstonia solanac...    59   2e-07
ref|YP_003749452.1| hypothetical protein RPSI07_mp0464 [Ralstoni...    59   3e-07
ref|ZP_00946569.1| Hypothetical Protein RRSL_00424 [Ralstonia so...    57   9e-07

>ref|YP_003774308.1| phage-encoded membrane protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ62400.1| phage-encoded membrane protein [Herbaspirillum seropedicae SmR1]
          Length = 221

 Score =  159 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 81/172 (47%), Positives = 110/172 (63%), Gaps = 4/172 (2%)

Query: 1   MVGKINIRGNVSQLINGNVHSISGPTTIGTRNSSEVIDAEDPPRITEFQRKRINVLVKEL 60
           M  KI  +G++ Q+I GN+H       +   N  E    ++  RITE+QRKRIN+LVKE 
Sbjct: 1   MSEKIEAQGDIGQIIEGNIHEAPRFNNVVNLNLGEA--KKEVQRITEYQRKRINMLVKEW 58

Query: 61  SAISGEKEVEIYKVFMKDFGIRYFRELPIEHYSTVKETLEEWISAGAAKAGPVAVPEVVK 120
           +AI G+KE+EIYK+F+ D+GI+YFRELPIEHY+ VKETLE WI AG AK    A+ +   
Sbjct: 59  AAICGDKEIEIYKIFIADYGIQYFRELPIEHYTKVKETLEGWIDAGTAKTDR-AIDQARM 117

Query: 121 AHSERVQHQLG-CPACIEKDASFGRALRAIFALAVLAFLLSLLCGWLLYKMP 171
                 QH++  C  C EKD +  RA + +    +L  +L++ CGWLLYKMP
Sbjct: 118 LPPTSEQHKVHECAVCSEKDVAIARAQKQVLIHWLLVLVLAMTCGWLLYKMP 169


>ref|YP_001165282.1| hypothetical protein RPRSA1_gp33 [Ralstonia phage phiRSA1]
 dbj|BAF52410.1| hypothetical transmembrane protein [Ralstonia phage phiRSA1]
          Length = 248

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 11/156 (7%)

Query: 5   INIRGNVSQLINGNVHSISGPTT-----IGTRNSSEVIDAEDPPR-ITEFQRKRINVLVK 58
           I ++G+  Q++ G+        T     + T N+ +   A +P R I + QR+RI   V 
Sbjct: 6   IVVKGDAGQVVAGDATHDGASATNHLSNVITINNGKGDQAPEPSRKINDLQRRRIASKVH 65

Query: 59  ELSAISGEKEVEIYKVFMKDFGIRYFRELPIEHYSTVKETLEEWISAGAAKAGPVAVPEV 118
           E+   +G +++E+Y++ + DFG+   R+LP   +  V E LE WI+  + +  PV     
Sbjct: 66  EVMNATGMEKLEVYRIILTDFGLDEIRDLPRNQFKAVMEMLERWIAEESEE--PVIETSS 123

Query: 119 VKAHSER---VQHQLGCPACIEKDASFGRALRAIFA 151
             A SER   V   + C  C   ++   R  R + A
Sbjct: 124 APASSERESQVIPDVPCIGCTAVESRLTRMRRWMIA 159


>gb|AEG69144.1| conserved hypothetical protein [Ralstonia solanacearum Po82]
          Length = 260

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 54/109 (49%), Gaps = 7/109 (6%)

Query: 39  AEDPPRITEFQRKRINVLVKELSAISGEKEVEIYKVFMKDFGIRYFRELPIEHYSTVKET 98
           AE   RI + QR RI   V+EL+  SG KE+E+Y++ + DFG+    +L  + + T  E 
Sbjct: 119 AEPIRRICDLQRGRIAAKVRELTDASGLKELEVYRIILADFGLTAIGDLRRDQFKTAMEK 178

Query: 99  LEEWISAGAAKAGPVAVPEVVKAHSERVQHQLGCPACIEKDASFGRALR 147
           L  WIS   A+  P    E   A + R      C  C E++    RA R
Sbjct: 179 LGRWIS--EARDEPAT--EATHASAAR---NAPCAHCAERERQLVRARR 220


>ref|YP_003749452.1| hypothetical protein RPSI07_mp0464 [Ralstonia solanacearum PSI07]
 emb|CBJ34808.1| conserved hypothethical protein [Ralstonia solanacearum PSI07]
 emb|CCA80185.1| conserved hypothethical protein [blood disease bacterium R229]
          Length = 146

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 9/104 (8%)

Query: 44  RITEFQRKRINVLVKELSAISGEKEVEIYKVFMKDFGIRYFRELPIEHYSTVKETLEEWI 103
           +I++ QR RI   V EL  ++G +E E+Y+V + DFG+    +L  + + +  E L  WI
Sbjct: 25  KISDLQRGRIAAKVHELMDVTGLEERELYRVILADFGLADLGDLRRDQFKSAMEKLGRWI 84

Query: 104 SAGAAKAGPVAVPEVVKAHSERVQHQLGCPACIEKDASFGRALR 147
           S   A+  P   P   +       H + C  C E D++  RA R
Sbjct: 85  S--EAREEPTDAPAPAR-------HDIPCARCAELDSALARARR 119


>ref|ZP_00946569.1| Hypothetical Protein RRSL_00424 [Ralstonia solanacearum UW551]
 gb|EAP70932.1| Hypothetical Protein RRSL_00424 [Ralstonia solanacearum UW551]
          Length = 260

 Score = 57.4 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 7/104 (6%)

Query: 44  RITEFQRKRINVLVKELSAISGEKEVEIYKVFMKDFGIRYFRELPIEHYSTVKETLEEWI 103
           RI + QR RI   V+EL+  SG KE+E+Y++ + DFG+    +L  + + T  E L  WI
Sbjct: 124 RICDLQRGRIAAKVRELTDASGLKELEVYRIILADFGLSSIGDLRRDQFKTAMEKLGRWI 183

Query: 104 SAGAAKAGPVAVPEVVKAHSERVQHQLGCPACIEKDASFGRALR 147
           S   A+  P       +A          C  C E+D+   RA R
Sbjct: 184 S--EARDEPAT-----EAAHASAARNAPCAHCAERDSQLVRARR 220