BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4479.p (275 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value dbj|GAA16397.1| putative cAMP regulatory protein [Pseudomonas ae... 366 2e-99 ref|ZP_01363719.1| hypothetical protein PaerPA_01000819 [Pseudom... 365 3e-99 ref|ZP_03697130.1| transcriptional regulator, Crp/Fnr family [Lu... 362 4e-98 ref|YP_004693370.1| Crp/Fnr family transcriptional regulator [Ni... 360 1e-97 ref|YP_004380592.1| Crp/Fnr family transcriptional regulator [Ps... 351 6e-95 >dbj|GAA16397.1| putative cAMP regulatory protein [Pseudomonas aeruginosa NCMG1179] Length = 242 Score = 366 bits (939), Expect = 2e-99, Method: Composition-based stats. Identities = 181/239 (75%), Positives = 207/239 (86%), Gaps = 2/239 (0%) Query: 36 MSNSNLPLKNHLLAALAPDVQHRLLPQLEWISLPLGMVLYESGDTLQHVYFPTDSIVSLL 95 M+N PL+NHLLAAL ++Q RL+P LE ++LPLG VLYESGD L+HVYFPTD+IVSLL Sbjct: 4 MTNDVSPLQNHLLAALTQEIQERLIPHLERVTLPLGKVLYESGDALRHVYFPTDAIVSLL 63 Query: 96 YVMEDGASAEISVVGNDGFIGIAILMGGESTPSRAIVQSGGSAYRLSASRFKEEFHRDTG 155 YVMEDGASAEISVVGN+G IG+A+ MGGESTPSRAIVQS G AYRL + K+EF+R Sbjct: 64 YVMEDGASAEISVVGNEGLIGVAVFMGGESTPSRAIVQSAGHAYRLPGQKLKDEFNRHGE 123 Query: 156 TLHLMLRYSQALLTQMAQTAVCNRHHSIDQQLCRWLLLSLDRLSGNQVTMTQELIANMLG 215 L LMLRY+QAL+TQMAQTAVCNRHHSIDQQLCRWLLLSLDRL NQ++MTQELIANMLG Sbjct: 124 MLQLMLRYTQALITQMAQTAVCNRHHSIDQQLCRWLLLSLDRLPSNQLSMTQELIANMLG 183 Query: 216 VRREGVTEAAGKLQRQGVIEYSRGRLTVLNRPRLEDLCCECYAVVRKETQRLLP--PTR 272 VRREGVTEAAGKLQ+ GVI+YSRG +TVL+RP+LE LCCECYAVV++ET RLLP P R Sbjct: 184 VRREGVTEAAGKLQKLGVIKYSRGHITVLDRPQLEALCCECYAVVKRETDRLLPYLPAR 242 >ref|ZP_01363719.1| hypothetical protein PaerPA_01000819 [Pseudomonas aeruginosa PACS2] gb|AAP22585.1| putative cAMP regulatory protein [Pseudomonas aeruginosa] Length = 239 Score = 365 bits (938), Expect = 3e-99, Method: Composition-based stats. Identities = 181/239 (75%), Positives = 207/239 (86%), Gaps = 2/239 (0%) Query: 36 MSNSNLPLKNHLLAALAPDVQHRLLPQLEWISLPLGMVLYESGDTLQHVYFPTDSIVSLL 95 M+N PL+NHLLAAL ++Q RL+P LE ++LPLG VLYESGD L+HVYFPTD+IVSLL Sbjct: 1 MTNDVSPLQNHLLAALTQEIQERLIPHLERVTLPLGKVLYESGDALRHVYFPTDAIVSLL 60 Query: 96 YVMEDGASAEISVVGNDGFIGIAILMGGESTPSRAIVQSGGSAYRLSASRFKEEFHRDTG 155 YVMEDGASAEISVVGN+G IG+A+ MGGESTPSRAIVQS G AYRL + K+EF+R Sbjct: 61 YVMEDGASAEISVVGNEGLIGVAVFMGGESTPSRAIVQSAGHAYRLPGQKLKDEFNRHGE 120 Query: 156 TLHLMLRYSQALLTQMAQTAVCNRHHSIDQQLCRWLLLSLDRLSGNQVTMTQELIANMLG 215 L LMLRY+QAL+TQMAQTAVCNRHHSIDQQLCRWLLLSLDRL NQ++MTQELIANMLG Sbjct: 121 MLQLMLRYTQALITQMAQTAVCNRHHSIDQQLCRWLLLSLDRLPSNQLSMTQELIANMLG 180 Query: 216 VRREGVTEAAGKLQRQGVIEYSRGRLTVLNRPRLEDLCCECYAVVRKETQRLLP--PTR 272 VRREGVTEAAGKLQ+ GVI+YSRG +TVL+RP+LE LCCECYAVV++ET RLLP P R Sbjct: 181 VRREGVTEAAGKLQKLGVIKYSRGHITVLDRPQLEALCCECYAVVKRETDRLLPYLPAR 239 >ref|ZP_03697130.1| transcriptional regulator, Crp/Fnr family [Lutiella nitroferrum 2002] gb|EEG09616.1| transcriptional regulator, Crp/Fnr family [Lutiella nitroferrum 2002] Length = 249 Score = 362 bits (928), Expect = 4e-98, Method: Composition-based stats. Identities = 179/234 (76%), Positives = 203/234 (86%) Query: 36 MSNSNLPLKNHLLAALAPDVQHRLLPQLEWISLPLGMVLYESGDTLQHVYFPTDSIVSLL 95 MS + P +NHLLAAL +V +RL+P LE LPLG VLYESGD L+HV+FPTD+IVSLL Sbjct: 1 MSETPTPQQNHLLAALPAEVLNRLIPYLELEELPLGKVLYESGDALRHVFFPTDAIVSLL 60 Query: 96 YVMEDGASAEISVVGNDGFIGIAILMGGESTPSRAIVQSGGSAYRLSASRFKEEFHRDTG 155 YVME GASAEISVVGN+G +GIA+ MGGESTPSRAIVQS G A+RL+ RFK+E +R T Sbjct: 61 YVMESGASAEISVVGNEGLVGIAVFMGGESTPSRAIVQSAGHAFRLAGPRFKDEVNRHTE 120 Query: 156 TLHLMLRYSQALLTQMAQTAVCNRHHSIDQQLCRWLLLSLDRLSGNQVTMTQELIANMLG 215 L LMLRY+QAL+TQMAQTAVCNRHHSIDQQLCRWLLLSLDRL NQ+TMTQELIANMLG Sbjct: 121 LLQLMLRYTQALITQMAQTAVCNRHHSIDQQLCRWLLLSLDRLPSNQLTMTQELIANMLG 180 Query: 216 VRREGVTEAAGKLQRQGVIEYSRGRLTVLNRPRLEDLCCECYAVVRKETQRLLP 269 VRREGVT+AAGKLQ+ GVIEYSRG +TVL+RP+LE LCCECYAVV+KET RLLP Sbjct: 181 VRREGVTDAAGKLQKLGVIEYSRGHITVLDRPKLEQLCCECYAVVKKETDRLLP 234 >ref|YP_004693370.1| Crp/Fnr family transcriptional regulator [Nitrosomonas sp. Is79A3] gb|AEI99970.1| transcriptional regulator, Crp/Fnr family [Nitrosomonas sp. Is79A3] Length = 242 Score = 360 bits (925), Expect = 1e-97, Method: Composition-based stats. Identities = 178/228 (78%), Positives = 200/228 (87%) Query: 42 PLKNHLLAALAPDVQHRLLPQLEWISLPLGMVLYESGDTLQHVYFPTDSIVSLLYVMEDG 101 P +NHLLAAL +VQ+RL P LE +SLPLG VLYE GD L+HVYFPTDSIVSLLYVME G Sbjct: 10 PQQNHLLAALPAEVQNRLFPALELVSLPLGKVLYEPGDILRHVYFPTDSIVSLLYVMESG 69 Query: 102 ASAEISVVGNDGFIGIAILMGGESTPSRAIVQSGGSAYRLSASRFKEEFHRDTGTLHLML 161 ASAEISVVGNDG IG+A+ MGGESTPSR +VQS G AYRL SR KEEF+R TG L LML Sbjct: 70 ASAEISVVGNDGLIGVALFMGGESTPSRGVVQSAGHAYRLLESRLKEEFNRHTGFLLLML 129 Query: 162 RYSQALLTQMAQTAVCNRHHSIDQQLCRWLLLSLDRLSGNQVTMTQELIANMLGVRREGV 221 RY+QAL+TQMAQTAVCNRHHSIDQQLCRWLLLSLDRL NQ+TMTQELIANMLGVRREGV Sbjct: 130 RYTQALITQMAQTAVCNRHHSIDQQLCRWLLLSLDRLPDNQLTMTQELIANMLGVRREGV 189 Query: 222 TEAAGKLQRQGVIEYSRGRLTVLNRPRLEDLCCECYAVVRKETQRLLP 269 T+AA KLQ+ GVIEY+RG +TV++RP+LE LCCECY+VV++ET RLLP Sbjct: 190 TDAASKLQKLGVIEYNRGHITVMDRPKLEQLCCECYSVVKRETDRLLP 237 >ref|YP_004380592.1| Crp/Fnr family transcriptional regulator [Pseudomonas mendocina NK-01] gb|AEB58840.1| transcriptional regulator, Crp/Fnr family protein [Pseudomonas mendocina NK-01] Length = 242 Score = 351 bits (901), Expect = 6e-95, Method: Composition-based stats. Identities = 176/234 (75%), Positives = 198/234 (84%) Query: 36 MSNSNLPLKNHLLAALAPDVQHRLLPQLEWISLPLGMVLYESGDTLQHVYFPTDSIVSLL 95 M + P +NHLLAAL+ +V+ RL LE + LPLG VLYESGDT++HVYFPTDSI+SL+ Sbjct: 1 MHEPHQPQQNHLLAALSAEVRQRLFAHLELVPLPLGKVLYESGDTMRHVYFPTDSIISLI 60 Query: 96 YVMEDGASAEISVVGNDGFIGIAILMGGESTPSRAIVQSGGSAYRLSASRFKEEFHRDTG 155 YVME GASAEISVVGN+G +GIA+ MGGESTPSRA+VQSGG A+RL K EF R Sbjct: 61 YVMESGASAEISVVGNEGLVGIALFMGGESTPSRAVVQSGGHAFRLKGPLLKAEFDRHGE 120 Query: 156 TLHLMLRYSQALLTQMAQTAVCNRHHSIDQQLCRWLLLSLDRLSGNQVTMTQELIANMLG 215 L LMLRY+QAL+TQMAQTAVCNRHHSIDQQLCRWLLLSLDRL NQ+TMTQELIANMLG Sbjct: 121 LLVLMLRYTQALITQMAQTAVCNRHHSIDQQLCRWLLLSLDRLPSNQLTMTQELIANMLG 180 Query: 216 VRREGVTEAAGKLQRQGVIEYSRGRLTVLNRPRLEDLCCECYAVVRKETQRLLP 269 VRREGVTEAAGKLQRQGVIEYSRG +TVL+R +LE L CECYAVV+KET RLLP Sbjct: 181 VRREGVTEAAGKLQRQGVIEYSRGHITVLDRHKLEQLSCECYAVVKKETDRLLP 234