BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4478.p (161 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_981552.1| cyclic nucleotide-binding domain-containing pro... 153 7e-36 ref|YP_004753221.1| cyclic nucleotide-binding domain (cNMP-BD) p... 153 1e-35 ref|YP_547041.1| cyclic nucleotide-binding domain-containing pro... 150 7e-35 ref|YP_004783817.1| putative Crp/Fnr family transcriptional regu... 147 6e-34 ref|ZP_08824171.1| putative transcriptional regulator, Crp/Fnr f... 146 8e-34 >ref|YP_981552.1| cyclic nucleotide-binding domain-containing protein [Polaromonas naphthalenivorans CJ2] gb|ABM36631.1| cyclic nucleotide-binding domain (cNMP-BD) protein [Polaromonas naphthalenivorans CJ2] Length = 247 Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats. Identities = 73/161 (45%), Positives = 106/161 (65%) Query: 1 MVGREGMYGIPFALGLKSTEFHASVLYPGRAWSISTAAFRTELNQNKGLQLVLNRYINIV 60 MVGREGM G ALG+ + HA V G AW I+T F+ EL ++ L+ L+RY+ ++ Sbjct: 69 MVGREGMLGAQLALGVVTAPLHALVQGSGMAWRIATVPFKRELARSPALRRGLHRYLYVL 128 Query: 61 IEQLYSTCRCIKFHTLSERLAKWLLMSQDRSNAQEFSITQETLASLLGVRRVGITAAATQ 120 + Q ++ C++FH + RLA+WLLMSQDR++ F +T E LA +LG+RRVG+TAAA+ Sbjct: 129 MVQQATSAACLRFHLIGPRLARWLLMSQDRAHCDSFHLTHEFLAYMLGMRRVGVTAAASA 188 Query: 121 LRSNGIIEYSRGHVTILNRKHLEKQACSCYIDETKLYTKTL 161 L+ +G+I+Y RG + +L+R LE ACSCY + Y L Sbjct: 189 LQRSGLIQYHRGEIRVLDRSGLEAAACSCYATSQQTYNDLL 229 >ref|YP_004753221.1| cyclic nucleotide-binding domain (cNMP-BD) protein [Collimonas fungivorans Ter331] gb|AEK62398.1| cyclic nucleotide-binding domain (cNMP-BD) protein [Collimonas fungivorans Ter331] Length = 290 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 73/161 (45%), Positives = 105/161 (65%) Query: 1 MVGREGMYGIPFALGLKSTEFHASVLYPGRAWSISTAAFRTELNQNKGLQLVLNRYINIV 60 MVGREGM G+ ALG+ + HA V PG A I FR EL + L ++ Y+ + Sbjct: 129 MVGREGMLGVQMALGVATAPVHAVVQSPGAARRIGVNDFRGELAHSPALLRAMHHYLYVR 188 Query: 61 IEQLYSTCRCIKFHTLSERLAKWLLMSQDRSNAQEFSITQETLASLLGVRRVGITAAATQ 120 + Q+ ++ C++FH + RLA+WLLMSQDR+++ F +T E LA++LGVRR GITAAA+ Sbjct: 189 MAQMATSAACLRFHLIGPRLARWLLMSQDRAHSDSFRVTHEFLAAMLGVRREGITAAASA 248 Query: 121 LRSNGIIEYSRGHVTILNRKHLEKQACSCYIDETKLYTKTL 161 L+ +G+IEY RG++ +L+R LE AC CY E ++Y L Sbjct: 249 LQRSGLIEYRRGNLKVLDRLGLEAAACGCYAVERQVYAALL 289 >ref|YP_547041.1| cyclic nucleotide-binding domain-containing protein [Polaromonas sp. JS666] gb|ABE42143.1| cyclic nucleotide-binding domain (cNMP-BD) protein [Polaromonas sp. JS666] Length = 237 Score = 150 bits (378), Expect = 7e-35, Method: Composition-based stats. Identities = 71/143 (49%), Positives = 98/143 (68%) Query: 1 MVGREGMYGIPFALGLKSTEFHASVLYPGRAWSISTAAFRTELNQNKGLQLVLNRYINIV 60 MVGREGM G ALG+ ++ HA V PG AW + T AFR EL + LQ LNRY+ ++ Sbjct: 69 MVGREGMLGAQVALGVVTSPLHALVQGPGAAWRVDTGAFRKELAASAALQRGLNRYLYVL 128 Query: 61 IEQLYSTCRCIKFHTLSERLAKWLLMSQDRSNAQEFSITQETLASLLGVRRVGITAAATQ 120 + Q ++ C++FH + RLA+WLLM+QDR+++ F +TQ LA +LGVRRVG+TAAA Sbjct: 129 MAQQAASAACLRFHLIGPRLARWLLMTQDRAHSDSFHVTQAFLAYMLGVRRVGVTAAAGA 188 Query: 121 LRSNGIIEYSRGHVTILNRKHLE 143 L+ +G+IEY RG +L+R LE Sbjct: 189 LQRSGLIEYHRGDFRVLDRSGLE 211 >ref|YP_004783817.1| putative Crp/Fnr family transcriptional regulator [Acidithiobacillus ferrivorans SS3] gb|AEM47491.1| putative transcriptional regulator, Crp/Fnr family [Acidithiobacillus ferrivorans SS3] Length = 244 Score = 147 bits (370), Expect = 6e-34, Method: Composition-based stats. Identities = 70/150 (46%), Positives = 96/150 (64%) Query: 1 MVGREGMYGIPFALGLKSTEFHASVLYPGRAWSISTAAFRTELNQNKGLQLVLNRYINIV 60 MVG EGM GIP LG ++ A V G ++ FR EL + LQ +LNRY+ +V Sbjct: 77 MVGNEGMVGIPLILGASTSLLPAVVQSAGPTLRMTAVLFRRELQGSPVLQSLLNRYLYVV 136 Query: 61 IEQLYSTCRCIKFHTLSERLAKWLLMSQDRSNAQEFSITQETLASLLGVRRVGITAAATQ 120 + QL T C FH + RLA+WLLM+QDRS++ +F +T + LA +LG RRVG+T AA Sbjct: 137 MTQLARTAACSHFHVVEARLARWLLMTQDRSHSNQFHVTHKFLAGMLGARRVGVTTAALA 196 Query: 121 LRSNGIIEYSRGHVTILNRKHLEKQACSCY 150 L++ G+I Y RG VT+L+R LE +C+CY Sbjct: 197 LQNRGLIRYCRGDVTVLDRAGLEDASCACY 226 >ref|ZP_08824171.1| putative transcriptional regulator, Crp/Fnr family [Thiorhodococcus drewsii AZ1] gb|EGV30064.1| putative transcriptional regulator, Crp/Fnr family [Thiorhodococcus drewsii AZ1] Length = 238 Score = 146 bits (369), Expect = 8e-34, Method: Composition-based stats. Identities = 69/161 (42%), Positives = 102/161 (63%) Query: 1 MVGREGMYGIPFALGLKSTEFHASVLYPGRAWSISTAAFRTELNQNKGLQLVLNRYINIV 60 +VG EGM G P LG++ T+ V PG AW +S+ F ++Q+ LQ L+RY++++ Sbjct: 77 LVGNEGMIGTPLILGVEFTQIRTFVQGPGPAWRLSSEGFGEAMHQSSVLQARLHRYLDVL 136 Query: 61 IEQLYSTCRCIKFHTLSERLAKWLLMSQDRSNAQEFSITQETLASLLGVRRVGITAAATQ 120 + Q C +FH + RLA+WLLM+QDR+++ F +T E LA LLGVRRVG+T AA+ Sbjct: 137 MNQSIQLLTCTRFHRVEARLARWLLMTQDRAHSNHFHVTHELLALLLGVRRVGVTKAASA 196 Query: 121 LRSNGIIEYSRGHVTILNRKHLEKQACSCYIDETKLYTKTL 161 L+ +I+Y RG VT+L+R L+ AC CY +Y + L Sbjct: 197 LQERQLIQYRRGEVTVLDRTGLQSAACGCYGAAEAMYEQVL 237