BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4472.p (216 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_715845.1| hypothetical protein SO_0204 [Shewanella oneide... 201 5e-50 ref|YP_004488714.1| transport-associated protein [Delftia sp. Cs... 199 3e-49 emb|CBA29358.1| hypothetical protein Csp_A11740 [Curvibacter put... 190 1e-46 ref|YP_002947436.1| transport-associated [Variovorax paradoxus S... 188 4e-46 ref|YP_003775806.1| periplasmic or secreted lipoprotein [Herbasp... 182 3e-44 >ref|NP_715845.1| hypothetical protein SO_0204 [Shewanella oneidensis MR-1] gb|AAN53290.1|AE015470_3 hypothetical protein SO_0204 [Shewanella oneidensis MR-1] Length = 219 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 112/215 (52%), Positives = 157/215 (73%) Query: 1 MKSDAQIQEAVYEELKWDPSVIATDIGVEVSTGIVTLFGHVGSHSEKVAAERAAQRVIGV 60 +K+DAQIQ+ V EELKW+PSV A++IGVEV GIVTL GHV +++EK AE+AAQRV V Sbjct: 2 LKTDAQIQKDVLEELKWEPSVQASNIGVEVKDGIVTLAGHVDTYAEKWHAEQAAQRVCCV 61 Query: 61 KGVAIAIAVKLPLSSHREDADIARTASNVLSWSTYVPYDNLQVLVEHGWITLTGEVRWDF 120 K +A+ I VK+ + R DADIAR+ N+L W+ ++P D+++V+VE GW+TL+G V D+ Sbjct: 62 KALAVEIDVKMNGAIKRTDADIARSVQNILEWNVFIPKDSVRVMVESGWVTLSGHVTADY 121 Query: 121 ERRGAVSAVRDLMGVVGVISHIRIREAVSVASLKHEIEATLKRRAHDEAKAISVDVSGSE 180 +RR A S++R + GV GV + I ++ V+ A +K +IEATLKRRA EA AI VD+ E Sbjct: 122 QRRTAASSIRYMSGVTGVSNQIVLKPVVTAAVIKTDIEATLKRRASAEADAIHVDIHNHE 181 Query: 181 VVLTGSVHNLAERDLVTNAVWGTPGVCNVIDRLSV 215 V L+G ++LAER+L++ AVW +PGV V D + V Sbjct: 182 VTLSGKANSLAERELISRAVWDSPGVWKVTDNILV 216 >ref|YP_004488714.1| transport-associated protein [Delftia sp. Cs1-4] gb|AEF90359.1| transport-associated protein [Delftia sp. Cs1-4] Length = 216 Score = 199 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 114/215 (53%), Positives = 147/215 (68%) Query: 1 MKSDAQIQEAVYEELKWDPSVIATDIGVEVSTGIVTLFGHVGSHSEKVAAERAAQRVIGV 60 MK+D Q+Q+ V ELKW+PSV A+ IGVEV G+VTL G V S+ EK AERA QRV+GV Sbjct: 1 MKTDTQLQQDVMAELKWEPSVHASQIGVEVKDGVVTLAGEVSSYLEKWGAERAVQRVVGV 60 Query: 61 KGVAIAIAVKLPLSSHREDADIARTASNVLSWSTYVPYDNLQVLVEHGWITLTGEVRWDF 120 + +AI + VKL R D DIA +A NVLSW+ VP D +QVLVE GWITL+GEV W++ Sbjct: 61 RALAIDMTVKLSQMGKRTDTDIAASARNVLSWTNSVPIDTVQVLVEDGWITLSGEVVWNY 120 Query: 121 ERRGAVSAVRDLMGVVGVISHIRIREAVSVASLKHEIEATLKRRAHDEAKAISVDVSGSE 180 +R A VR L GV GV + I I+ S +K EIE +KRRA + K I VDV+G + Sbjct: 121 QRSDAADRVRLLPGVRGVSNQISIKPRASAIVVKSEIEDAIKRRATSDTKTIVVDVTGGD 180 Query: 181 VVLTGSVHNLAERDLVTNAVWGTPGVCNVIDRLSV 215 V LTG+V + ERDLV ++ WG+PGV V DR+++ Sbjct: 181 VTLTGTVRSWTERDLVVHSAWGSPGVRQVFDRMTI 215 >emb|CBA29358.1| hypothetical protein Csp_A11740 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 217 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 103/216 (47%), Positives = 144/216 (66%) Query: 1 MKSDAQIQEAVYEELKWDPSVIATDIGVEVSTGIVTLFGHVGSHSEKVAAERAAQRVIGV 60 MK+D Q+Q+ V EL W+PSV A +IGVE G+VTL GHV ++ EK AE+AA+RV+GV Sbjct: 1 MKTDLQLQQDVLAELHWEPSVHAENIGVEAKDGVVTLAGHVMTYQEKYHAEKAARRVMGV 60 Query: 61 KGVAIAIAVKLPLSSHREDADIARTASNVLSWSTYVPYDNLQVLVEHGWITLTGEVRWDF 120 + +A+ I VKL S R D+DIA +A N L W + + + V VE GWITLTG+ W F Sbjct: 61 RALAVEIDVKLASSGIRNDSDIANSAKNALQWMSTPLGNKVNVTVEKGWITLTGQTEWQF 120 Query: 121 ERRGAVSAVRDLMGVVGVISHIRIREAVSVASLKHEIEATLKRRAHDEAKAISVDVSGSE 180 ++ A AVR LMGV GV + I ++ +++ K +IEA L RRAH +A I++D+ GS Sbjct: 121 QKLAAAVAVRYLMGVNGVSNQIILQPGTKLSAAKADIEAALVRRAHTDAGKINIDIDGST 180 Query: 181 VVLTGSVHNLAERDLVTNAVWGTPGVCNVIDRLSVT 216 + LTG+V N ERD A W TPGV +V+D++++T Sbjct: 181 LTLTGNVSNWTERDTAKEAAWSTPGVTSVVDKMTMT 216 >ref|YP_002947436.1| transport-associated [Variovorax paradoxus S110] gb|ACS22170.1| transport-associated [Variovorax paradoxus S110] Length = 217 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 103/215 (47%), Positives = 149/215 (69%) Query: 1 MKSDAQIQEAVYEELKWDPSVIATDIGVEVSTGIVTLFGHVGSHSEKVAAERAAQRVIGV 60 MKSD Q++ V EL+WDP++ +TD+GV V+ G+VTL GH+GS +EK+A E+AAQRV GV Sbjct: 1 MKSDTQLRADVQAELEWDPAITSTDVGVIVNHGVVTLTGHLGSCAEKLAVEQAAQRVSGV 60 Query: 61 KGVAIAIAVKLPLSSHREDADIARTASNVLSWSTYVPYDNLQVLVEHGWITLTGEVRWDF 120 K +AI +VKL R DADIA+ A + L W+ VP D ++ +VE GW+TLTGEV WD+ Sbjct: 61 KALAIETSVKLAAGFERTDADIAQAAGHALEWNVQVPRDAVRPMVEDGWVTLTGEVEWDY 120 Query: 121 ERRGAVSAVRDLMGVVGVISHIRIREAVSVASLKHEIEATLKRRAHDEAKAISVDVSGSE 180 +R+ A S VR+L+GV G+ + +RI+ A ++ +++ L R HD + ++VDV+GS+ Sbjct: 121 QRQAAESTVRNLLGVTGITNLVRIKLQRCSADVERQVQDALIRVFHDAPRQVAVDVNGSQ 180 Query: 181 VVLTGSVHNLAERDLVTNAVWGTPGVCNVIDRLSV 215 VVL G V + AE D V A W PGV +V++ L+V Sbjct: 181 VVLRGKVRSWAELDAVRGAAWSAPGVVSVVNELAV 215 >ref|YP_003775806.1| periplasmic or secreted lipoprotein [Herbaspirillum seropedicae SmR1] emb|CAM32657.1| Periplasmic or secreted lipoprotein [Herbaspirillum seropedicae] gb|ADJ63898.1| periplasmic or secreted lipoprotein [Herbaspirillum seropedicae SmR1] Length = 216 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 98/215 (45%), Positives = 145/215 (67%) Query: 1 MKSDAQIQEAVYEELKWDPSVIATDIGVEVSTGIVTLFGHVGSHSEKVAAERAAQRVIGV 60 MKSD Q+++ V +EL WDP+V IGVEVS GIVTL GH+ S++EK AA+RA +R+ GV Sbjct: 1 MKSDHQLRQEVMDELAWDPAVDDKRIGVEVSEGIVTLAGHLSSYAEKYAAQRAVERIGGV 60 Query: 61 KGVAIAIAVKLPLSSHREDADIARTASNVLSWSTYVPYDNLQVLVEHGWITLTGEVRWDF 120 +G+A+ + V+LP SS R D++IA +A N L W+T +P + +Q+ VE GWITL+GEV + + Sbjct: 61 RGIAVELDVRLPGSSERLDSEIAASARNALEWNTVLPKEGIQIKVEDGWITLSGEVEFAY 120 Query: 121 ERRGAVSAVRDLMGVVGVISHIRIREAVSVASLKHEIEATLKRRAHDEAKAISVDVSGSE 180 +R A ++R+L G++G+ + +++ + +K IEA L+RRAH + K++ V V Sbjct: 121 QRLAAEQSLRNLFGLIGISNQLKVEAKAAPKDIKTGIEAALQRRAHLQTKSLRVQVDNKT 180 Query: 181 VVLTGSVHNLAERDLVTNAVWGTPGVCNVIDRLSV 215 V L+G V +LAER A TPGV VID + V Sbjct: 181 VTLSGKVGSLAERHEACKAALHTPGVEQVIDEIIV 215