BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4468.p (249 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_03697130.1| transcriptional regulator, Crp/Fnr family [Lu... 355 4e-96 dbj|GAA16397.1| putative cAMP regulatory protein [Pseudomonas ae... 349 2e-94 ref|ZP_01363719.1| hypothetical protein PaerPA_01000819 [Pseudom... 349 2e-94 ref|YP_004380592.1| Crp/Fnr family transcriptional regulator [Ps... 347 7e-94 ref|YP_004693370.1| Crp/Fnr family transcriptional regulator [Ni... 347 1e-93 >ref|ZP_03697130.1| transcriptional regulator, Crp/Fnr family [Lutiella nitroferrum 2002] gb|EEG09616.1| transcriptional regulator, Crp/Fnr family [Lutiella nitroferrum 2002] Length = 249 Score = 355 bits (910), Expect = 4e-96, Method: Composition-based stats. Identities = 173/235 (73%), Positives = 199/235 (84%) Query: 10 MHSSELPQKNRLLAALTPDVFQRIQPQLEWVSLPLATVLYESGDKLQHVYFPIDSIVSLL 69 M + PQ+N LLAAL +V R+ P LE LPL VLYESGD L+HV+FP D+IVSLL Sbjct: 1 MSETPTPQQNHLLAALPAEVLNRLIPYLELEELPLGKVLYESGDALRHVFFPTDAIVSLL 60 Query: 70 YVMENGASAEISVVGNDGFVGIAILMGGESTPSRAVVQSGGGAYRLSARRFKEEFHQNIQ 129 YVME+GASAEISVVGN+G VGIA+ MGGESTPSRA+VQS G A+RL+ RFK+E +++ + Sbjct: 61 YVMESGASAEISVVGNEGLVGIAVFMGGESTPSRAIVQSAGHAFRLAGPRFKDEVNRHTE 120 Query: 130 FLHLMLRYSQALLTQMAQTAVCNRHHSIDQQLCRWLLLSLDRLSGNQLIMTQELIANMLG 189 L LMLRY+QAL+TQMAQTAVCNRHHSIDQQLCRWLLLSLDRL NQL MTQELIANMLG Sbjct: 121 LLQLMLRYTQALITQMAQTAVCNRHHSIDQQLCRWLLLSLDRLPSNQLTMTQELIANMLG 180 Query: 190 VRREGVTEAAGKLQKDGVIEYSRGHLTVLKRQRLEELCCECYAVVRDETNRLFPY 244 VRREGVT+AAGKLQK GVIEYSRGH+TVL R +LE+LCCECYAVV+ ET+RL PY Sbjct: 181 VRREGVTDAAGKLQKLGVIEYSRGHITVLDRPKLEQLCCECYAVVKKETDRLLPY 235 >dbj|GAA16397.1| putative cAMP regulatory protein [Pseudomonas aeruginosa NCMG1179] Length = 242 Score = 349 bits (896), Expect = 2e-94, Method: Composition-based stats. Identities = 171/229 (74%), Positives = 199/229 (86%) Query: 16 PQKNRLLAALTPDVFQRIQPQLEWVSLPLATVLYESGDKLQHVYFPIDSIVSLLYVMENG 75 P +N LLAALT ++ +R+ P LE V+LPL VLYESGD L+HVYFP D+IVSLLYVME+G Sbjct: 10 PLQNHLLAALTQEIQERLIPHLERVTLPLGKVLYESGDALRHVYFPTDAIVSLLYVMEDG 69 Query: 76 ASAEISVVGNDGFVGIAILMGGESTPSRAVVQSGGGAYRLSARRFKEEFHQNIQFLHLML 135 ASAEISVVGN+G +G+A+ MGGESTPSRA+VQS G AYRL ++ K+EF+++ + L LML Sbjct: 70 ASAEISVVGNEGLIGVAVFMGGESTPSRAIVQSAGHAYRLPGQKLKDEFNRHGEMLQLML 129 Query: 136 RYSQALLTQMAQTAVCNRHHSIDQQLCRWLLLSLDRLSGNQLIMTQELIANMLGVRREGV 195 RY+QAL+TQMAQTAVCNRHHSIDQQLCRWLLLSLDRL NQL MTQELIANMLGVRREGV Sbjct: 130 RYTQALITQMAQTAVCNRHHSIDQQLCRWLLLSLDRLPSNQLSMTQELIANMLGVRREGV 189 Query: 196 TEAAGKLQKDGVIEYSRGHLTVLKRQRLEELCCECYAVVRDETNRLFPY 244 TEAAGKLQK GVI+YSRGH+TVL R +LE LCCECYAVV+ ET+RL PY Sbjct: 190 TEAAGKLQKLGVIKYSRGHITVLDRPQLEALCCECYAVVKRETDRLLPY 238 >ref|ZP_01363719.1| hypothetical protein PaerPA_01000819 [Pseudomonas aeruginosa PACS2] gb|AAP22585.1| putative cAMP regulatory protein [Pseudomonas aeruginosa] Length = 239 Score = 349 bits (895), Expect = 2e-94, Method: Composition-based stats. Identities = 171/229 (74%), Positives = 199/229 (86%) Query: 16 PQKNRLLAALTPDVFQRIQPQLEWVSLPLATVLYESGDKLQHVYFPIDSIVSLLYVMENG 75 P +N LLAALT ++ +R+ P LE V+LPL VLYESGD L+HVYFP D+IVSLLYVME+G Sbjct: 7 PLQNHLLAALTQEIQERLIPHLERVTLPLGKVLYESGDALRHVYFPTDAIVSLLYVMEDG 66 Query: 76 ASAEISVVGNDGFVGIAILMGGESTPSRAVVQSGGGAYRLSARRFKEEFHQNIQFLHLML 135 ASAEISVVGN+G +G+A+ MGGESTPSRA+VQS G AYRL ++ K+EF+++ + L LML Sbjct: 67 ASAEISVVGNEGLIGVAVFMGGESTPSRAIVQSAGHAYRLPGQKLKDEFNRHGEMLQLML 126 Query: 136 RYSQALLTQMAQTAVCNRHHSIDQQLCRWLLLSLDRLSGNQLIMTQELIANMLGVRREGV 195 RY+QAL+TQMAQTAVCNRHHSIDQQLCRWLLLSLDRL NQL MTQELIANMLGVRREGV Sbjct: 127 RYTQALITQMAQTAVCNRHHSIDQQLCRWLLLSLDRLPSNQLSMTQELIANMLGVRREGV 186 Query: 196 TEAAGKLQKDGVIEYSRGHLTVLKRQRLEELCCECYAVVRDETNRLFPY 244 TEAAGKLQK GVI+YSRGH+TVL R +LE LCCECYAVV+ ET+RL PY Sbjct: 187 TEAAGKLQKLGVIKYSRGHITVLDRPQLEALCCECYAVVKRETDRLLPY 235 >ref|YP_004380592.1| Crp/Fnr family transcriptional regulator [Pseudomonas mendocina NK-01] gb|AEB58840.1| transcriptional regulator, Crp/Fnr family protein [Pseudomonas mendocina NK-01] Length = 242 Score = 347 bits (891), Expect = 7e-94, Method: Composition-based stats. Identities = 174/235 (74%), Positives = 197/235 (83%) Query: 10 MHSSELPQKNRLLAALTPDVFQRIQPQLEWVSLPLATVLYESGDKLQHVYFPIDSIVSLL 69 MH PQ+N LLAAL+ +V QR+ LE V LPL VLYESGD ++HVYFP DSI+SL+ Sbjct: 1 MHEPHQPQQNHLLAALSAEVRQRLFAHLELVPLPLGKVLYESGDTMRHVYFPTDSIISLI 60 Query: 70 YVMENGASAEISVVGNDGFVGIAILMGGESTPSRAVVQSGGGAYRLSARRFKEEFHQNIQ 129 YVME+GASAEISVVGN+G VGIA+ MGGESTPSRAVVQSGG A+RL K EF ++ + Sbjct: 61 YVMESGASAEISVVGNEGLVGIALFMGGESTPSRAVVQSGGHAFRLKGPLLKAEFDRHGE 120 Query: 130 FLHLMLRYSQALLTQMAQTAVCNRHHSIDQQLCRWLLLSLDRLSGNQLIMTQELIANMLG 189 L LMLRY+QAL+TQMAQTAVCNRHHSIDQQLCRWLLLSLDRL NQL MTQELIANMLG Sbjct: 121 LLVLMLRYTQALITQMAQTAVCNRHHSIDQQLCRWLLLSLDRLPSNQLTMTQELIANMLG 180 Query: 190 VRREGVTEAAGKLQKDGVIEYSRGHLTVLKRQRLEELCCECYAVVRDETNRLFPY 244 VRREGVTEAAGKLQ+ GVIEYSRGH+TVL R +LE+L CECYAVV+ ET+RL PY Sbjct: 181 VRREGVTEAAGKLQRQGVIEYSRGHITVLDRHKLEQLSCECYAVVKKETDRLLPY 235 >ref|YP_004693370.1| Crp/Fnr family transcriptional regulator [Nitrosomonas sp. Is79A3] gb|AEI99970.1| transcriptional regulator, Crp/Fnr family [Nitrosomonas sp. Is79A3] Length = 242 Score = 347 bits (889), Expect = 1e-93, Method: Composition-based stats. Identities = 172/228 (75%), Positives = 194/228 (85%) Query: 16 PQKNRLLAALTPDVFQRIQPQLEWVSLPLATVLYESGDKLQHVYFPIDSIVSLLYVMENG 75 PQ+N LLAAL +V R+ P LE VSLPL VLYE GD L+HVYFP DSIVSLLYVME+G Sbjct: 10 PQQNHLLAALPAEVQNRLFPALELVSLPLGKVLYEPGDILRHVYFPTDSIVSLLYVMESG 69 Query: 76 ASAEISVVGNDGFVGIAILMGGESTPSRAVVQSGGGAYRLSARRFKEEFHQNIQFLHLML 135 ASAEISVVGNDG +G+A+ MGGESTPSR VVQS G AYRL R KEEF+++ FL LML Sbjct: 70 ASAEISVVGNDGLIGVALFMGGESTPSRGVVQSAGHAYRLLESRLKEEFNRHTGFLLLML 129 Query: 136 RYSQALLTQMAQTAVCNRHHSIDQQLCRWLLLSLDRLSGNQLIMTQELIANMLGVRREGV 195 RY+QAL+TQMAQTAVCNRHHSIDQQLCRWLLLSLDRL NQL MTQELIANMLGVRREGV Sbjct: 130 RYTQALITQMAQTAVCNRHHSIDQQLCRWLLLSLDRLPDNQLTMTQELIANMLGVRREGV 189 Query: 196 TEAAGKLQKDGVIEYSRGHLTVLKRQRLEELCCECYAVVRDETNRLFP 243 T+AA KLQK GVIEY+RGH+TV+ R +LE+LCCECY+VV+ ET+RL P Sbjct: 190 TDAASKLQKLGVIEYNRGHITVMDRPKLEQLCCECYSVVKRETDRLLP 237