BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4466.p (1103 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001967506.1| orf_Bo105 [Agrobacterium tumefaciens] >gi|71... 135 5e-29 ref|YP_002962247.1| hypothetical protein MexAM1_META1pCDS1132842... 95 8e-17 ref|YP_837370.1| hypothetical protein Bcen2424_3739 [Burkholderi... 88 1e-14 ref|ZP_00235854.1| reticulocyte binding protein [Bacillus cereus... 84 1e-13 ref|YP_001315003.1| hypothetical protein Smed_6522 [Sinorhizobiu... 72 5e-10 >ref|YP_001967506.1| orf_Bo105 [Agrobacterium tumefaciens] gb|AAZ50493.1| orf_Bo105 [Agrobacterium tumefaciens] Length = 1151 Score = 135 bits (340), Expect = 5e-29, Method: Composition-based stats. Identities = 117/513 (22%), Positives = 217/513 (42%), Gaps = 8/513 (1%) Query: 574 LEFFLSDSADIATIELLLEIDGTRDALEVRSKILYLAADISDQHSAQLRSAADAIRDELD 633 L +FL +++ +++ LE R I +D+ + + + A I L Sbjct: 626 LVYFLKHVCVPEILDVTRLFSSSKEVLEERRNIFLALSDLRPESADDYTAEAMLISHNLM 685 Query: 634 VGDVLDELDETMVSVDEAAILPLVERELASDFARYKSLIGEEEAENSSVDELVRSLRNQS 693 V + +D T + V++ A + REL D+ RY+ L + D+++R L + Sbjct: 686 VDEGRWIVDRTRIHVEDEAFVRWASRELQEDYERYRDLEPVSVDAPQTFDDVLRELDGAA 745 Query: 694 AAAFQI-PKSESGDLLINMIQTALDRFIDDAVYGLDAIIGRRIRHGTISSELRGTLEQAQ 752 + P +E+ +L+++I+ A D F+ +A +GLD + + +RH + +RG LE + Sbjct: 746 LSRHSFSPDNEADAVLMSVIRRAGDEFLTNATFGLDFYLAKNVRHHSFIGLIRGPLEVSG 805 Query: 753 LIGQRPRSGADYDAPKRIMADLANPSINKRGVVR-AIGRFSAAIDLLVAQLRDEVFQCKP 811 LI R ++Y + + R + A FSA D ++ +D F + Sbjct: 806 LITTRETETSEYHPNRYWLESFKTLETADRTRMELAFRNFSAHFDDILLDAKDRFFHVRT 865 Query: 812 KGKLEPVFELPISTLMFAAARDSAATAPSVVSFLAELFDTFWFMLSIYTDRHRVKVKHYT 871 + +P S +++ R + +F L FW L R + Sbjct: 866 AEYPSGMLAIPYSDALYSVVRVWLTLDLDITTFFRFLITVFWISLEQSLQAVRQLISVVL 925 Query: 872 ENALKEAFSKLLADFKGARYTD---VLLHSSVQKASEELQRRAGVIAAWIQIPKARSSGR 928 + AL F KL + K D + + K S E+Q + + W A +S Sbjct: 926 KGALVAEFDKLRSSVKEIAEFDPGFLEFDAEAGKRSAEVQGKLDEASQWFVHTGALASQH 985 Query: 929 TYSLKLVFDAAIAHCKARWANFEPVSVESIDASIRLDAHGYPIVFDALRIALENIALHSG 988 ++L+ + + + + P +S S+ LDA V D L + L N HSG Sbjct: 986 LFTLEQILEVGLEATLTTQRGYSPRINKSTTGSLSLDAANLVFVHDVLFVGLGNTKKHSG 1045 Query: 989 VRQGNRVETSIGFNEDCTKICFNIVSDASKDSSSKEKIARVESIREDIEKRSFADRAKRT 1048 + +++ + ++++ + I+SD K S EK R +R+ + +++ + ++ Sbjct: 1046 L-PSPKIDIAAKWSDEAHTLSIEIISDC-KASVRPEKAKRAAEVRQMVSGGTYSRQTRKD 1103 Query: 1049 SGSGLAKLATLVQQRQSCNISFGMTNGNKSFKL 1081 GSG AKLA +V Q I FG N + F+L Sbjct: 1104 DGSGFAKLAAIVTQSDRGRIEFGFGNDGR-FRL 1135 >ref|YP_002962247.1| hypothetical protein MexAM1_META1pCDS1132842D [methylobacterium extorquens AM1] gb|ACS38970.1| hypothetical protein; RMQ09746 [Methylobacterium extorquens AM1] Length = 727 Score = 94.7 bits (234), Expect = 8e-17, Method: Composition-based stats. Identities = 108/510 (21%), Positives = 212/510 (41%), Gaps = 13/510 (2%) Query: 567 SHQDTTGLEFFLSDSADIATIELLLEIDGTRDALEVRSKILYLAADISDQHSA----QLR 622 S D + +FL + ++ L ++ TR+ + R+KIL L +DI+D+ +L Sbjct: 194 SDHDQKQIIYFLRNICVPEVLDQSLYLENTREVEDERAKILLLLSDITDKKDQDAQDKLI 253 Query: 623 SAADAIRDELDVGDVLDELDETMVSVDEAAILPLVERELASDFARYKSLIGEE-EAENSS 681 +IR + + D +D++ + V+ + V+ ++ + RYK + + A+ Sbjct: 254 EELRSIRTKQVLRDATMRIDQSKIYVNMEGLRRSVDSQMRESWRRYKLTVDSDFSADIVH 313 Query: 682 VDELVRSLRNQ--SAAAFQIPKSESGDLLINMIQTALDRFIDDAVYGLDAIIGRRIRHGT 739 + +++ N+ S A ++P E L N+ LD F +GLDA + IRHG Sbjct: 314 MGLIIKQGLNEKNSFIAVRVPTVERIKLFDNIFIDLLDLFTTSKEFGLDANLSTNIRHGY 373 Query: 740 ISSELRGTLEQAQLIGQRPRSGADYDAPKRIMADLANPSINKRGVVRAIGRFSAAIDLLV 799 + ELR L +L+ + A Y ++ L+ S ++ + R + FS ID + Sbjct: 374 VVKELRNPLVALRLVTNKGSIDAGYRENDYWLSKLSEGSQHRDTLSRRLSEFSEQIDKEI 433 Query: 800 AQLRDEVFQCKPKGKLEPVFELPISTLMFAAARDSAATAPSVVSFLAELFDTFWFMLSIY 859 +L ++ + + + +F+ S + + + + F+ L W Sbjct: 434 ERLNYQLLRLRTDANPDGLFDFRFSDAVKRPLESACSKCSTYDEFMDLLSSVLWQATEQN 493 Query: 860 TDRHRVKVKHYTENALKEAFSKLLADFKGARYTDVL--LHSSVQKASEELQRRAGVIAAW 917 + R ++ L A ++L +D A L L+S++ EL +++W Sbjct: 494 LAKVRDTLRLIVSPNLTNALNQLQSDLYAAGIGHALPELNSAIASVRPELGHAIARVSSW 553 Query: 918 IQIPKARSSGRTYSLKLVFDAAIAHCKARWANFEPVSVESIDASIRLDAHGYPIVFDALR 977 + + + +S+ F+A + K+ +++ S ++L P+ Sbjct: 554 FVLSE-DTEFPDFSIGTAFEAGLQTVKSYYSHLNINSSFHAPGELQLKGFTLPLFARLFF 612 Query: 978 IALENIALHSG-VRQGNRVETSIGFNEDCTKICFNIVSDASKDSSSKEKIARVESIREDI 1036 I L+N A HSG R +ETSI + I I +D + D V+++ + Sbjct: 613 IILDNAAFHSGDNRTQLLLETSIEMSG--KTIHLRIANDLASDKDVGLLERDVKNVLDKY 670 Query: 1037 EKRSFADRAKRTSGSGLAKLATLVQQRQSC 1066 K S + + GSG K+ L+ C Sbjct: 671 SKDSAPEYVRLEGGSGYPKIWKLLTHDLRC 700 >ref|YP_837370.1| hypothetical protein Bcen2424_3739 [Burkholderia cenocepacia HI2424] gb|ABK10477.1| conserved hypothetical protein [Burkholderia cenocepacia HI2424] Length = 1140 Score = 87.8 bits (216), Expect = 1e-14, Method: Composition-based stats. Identities = 100/485 (20%), Positives = 203/485 (41%), Gaps = 18/485 (3%) Query: 613 ISDQHSAQLRSAADAIRDELDVGDVLDELDETMVSVDEAAILPLVERELASDFARYK--- 669 I +SA + I +L+V +L ++ + + VDE I E L ARYK Sbjct: 655 IDAHNSASYQDEIRIITRDLNVALLLKKVQTSKIFVDEVGIRNAFEASLTDSLARYKELQ 714 Query: 670 ---SLIGEEEAENSSVDELVRSLRNQSAAAFQIPKSESGDLLINMIQTALDRFIDDAVYG 726 +L + + + ++E++ + F++P SE L M +F YG Sbjct: 715 NSPALTYQAQKLSKRIEEMIHTQGLLEFRDFKLPTSELEGLFHTMYLEVASQFAYSPAYG 774 Query: 727 LDAIIGRRIRHGTISSELRGTLEQAQLIGQRPRSGADY--DAPKRIMADLANPSINKRGV 784 LD + IRHG LRG L L+ R R+ A Y + R ++ L I+ V Sbjct: 775 LDTHLSTTIRHGAFEGHLRGPLATEGLLC-RTRNKAHYIPELTMRRLSHLVETEIDH--V 831 Query: 785 VRAIGRFSAAIDLLVAQLRDEVFQCKPKGKLEPVFELPISTLMFAAARDSAATAPSVVSF 844 R + RF+ ++ +++ + + K + +F L + A ++ + ++ Sbjct: 832 RRCLVRFTTRVEEMISTYLERRLRIKSSPTPDGMFALFVEPDSLAEISNTINSETTLDEV 891 Query: 845 LAELFDTFWFMLSIYTDRHRVKVKHYTENALKEAFSKLLADF--KGARYTDVLLHSSVQK 902 L W + + R+++ + ++ AF+ L+ + K +R + L ++ + Sbjct: 892 ADRLVAKCWALADSSMEEIRLELGTSARSHVESAFTALIQNLEEKISRERLLPLTDAIAR 951 Query: 903 ASEELQRRAGVIAAWIQIPKARSSGRTYSLKLVFDAAIAHCKARWANFEPVSVESIDASI 962 A + V++ W + P + + A+ + +E V + ++D Sbjct: 952 ARTQYDAAVDVVSEWFRRPTDLIR-EPFEFDIAAHVALRQIANCYVGYEIVPILNVDVQG 1010 Query: 963 RLDAHGYPIVFDALRIALENIALHSGVRQGNRVETSIGFNEDCTKICFNIVSDASKDSSS 1022 +L + + L I L+N+ LHSG + ET + + + + I + S+ Sbjct: 1011 KLPGFMLDGICEILFILLQNVLLHSGY-EDFVPETKVSARRENSYVVIEITNSLSESIDL 1069 Query: 1023 KEKIARVESIREDIEKRSFADRAKRTSGSGLAKLATLVQ--QRQSCNISFGMTNGNKSFK 1080 E+ A+ E+ + S A++ GSGL+K+ + + R+S +++ +T+ ++ F Sbjct: 1070 IERRAQAEAAMARYSRDSALRLARKEGGSGLSKVWRIAEFDLRKSHSLNLSVTD-DRQFT 1128 Query: 1081 LYFEL 1085 F L Sbjct: 1129 TTFRL 1133 >ref|ZP_00235854.1| reticulocyte binding protein [Bacillus cereus G9241] gb|EAL16507.1| reticulocyte binding protein [Bacillus cereus G9241] Length = 1136 Score = 84.3 bits (207), Expect = 1e-13, Method: Composition-based stats. Identities = 98/444 (22%), Positives = 178/444 (40%), Gaps = 23/444 (5%) Query: 640 ELDETMVSVDEAAILPLVERELASDFARYKSLIGEEEAENSSVDELVRSLRNQSAAAFQI 699 E++ + + VD I +E+ L +F RYKS + N + + + + + Sbjct: 686 EIENSKIYVDVEGIKVSLEKNLKENFIRYKSFGFGNKNVNPNYILIDKEIN------LML 739 Query: 700 PKSESGDLLINMIQTALDRFIDDAVYGLDAIIGRRIRHGTISSELRGTLEQAQLIGQRPR 759 P E +L NM+ D F+ YGLD + IRHGT+S +LRG +E LI Q Sbjct: 740 PGDEKWNLFSNMVLEIRDSFVSSKEYGLDGYLSVGIRHGTLSGQLRGKIENEHLITQIDS 799 Query: 760 SGADYDAPKRIMADLANPSINKRG-VVRAIGRFSAAIDLLVAQLRDEVFQCK-PKGKLE- 816 Y + + G +++++ FS +ID L+ L++E+ Q K E Sbjct: 800 VEQKYHDNNYWVERVGITKPELIGYLIKSLNDFSQSIDNLINVLKNELIQINIDNSKNEN 859 Query: 817 PVFELPISTLMFAAARDSAATAPSVVSFLAELFDTFWFMLSIYTDRHRVKVKHYTENALK 876 +F+ I+T F+ + + W TD + ++ +Y +N K Sbjct: 860 ALFDYIITTSDLEYLDTLIREDTEYNEFVDIIIEYLWRR----TDGNLSEINYYLKNHFK 915 Query: 877 E----AFSKLLADFKGAR-YTDVL-LHSSVQKASEELQRRAGVIAAWIQIPKARSSGRTY 930 F KL D + D+ L + + + E+Q I++W + S Y Sbjct: 916 TEMNICFEKLQFDLDNLKDQVDIADLSNVIVRMKTEMQYEVDKISSWFS-RRDPSEQSDY 974 Query: 931 SLKLVFDAAIAHCKARWANFEPVSVESIDAS-IRLDAHGYPIVFDALRIALENIALHSGV 989 + L + + + N + + D I L + D I ENI HSG+ Sbjct: 975 EIGLPIEIGLEMANNIYKNIKGYEITKKDIEVIPLKGKTFRGFVDVSFIIFENIFKHSGI 1034 Query: 990 RQGNRVETSIGFNEDCTKICFNIVSDASKDSSSKEKIARVESIREDIEKRSFADRAKRTS 1049 + ++E S + K+ FN ++ S+ + + +E ++ R+ + + Sbjct: 1035 LEQQQIEISCYLENE--KLIFNCINKISESIEIEALNKLMNEKKEKLKDRNVLEMVNKEG 1092 Query: 1050 GSGLAKLATLVQQRQSCNISFGMT 1073 GSG K+ ++ C+I T Sbjct: 1093 GSGFYKIHKIISIDLKCDIDMEFT 1116 >ref|YP_001315003.1| hypothetical protein Smed_6522 [Sinorhizobium medicae WSM419] gb|ABR65070.1| hypothetical protein Smed_6522 [Sinorhizobium medicae WSM419] Length = 1157 Score = 72.0 bits (175), Expect = 5e-10, Method: Composition-based stats. Identities = 95/480 (19%), Positives = 190/480 (39%), Gaps = 18/480 (3%) Query: 591 LEIDGTRDALEVRSKILYLAAD-ISDQHSAQLRSAADAIRDELDVGDVLDELDETMVSVD 649 L +D +R + R IL L ++ I+ + A ++ IR V + LDE+ + V+ Sbjct: 649 LALDTSRAVEDERVAILLLISELIAGKTPAAIKDELREIRTRQVVRETTLRLDESKIYVN 708 Query: 650 EAAILPLVERELASDFARYKSLIGEEEAENSSVDELVRSLRNQSAAAFQI---PKSESGD 706 I ++ + D+ RY+ L + +++ E++ +R + A +I SE Sbjct: 709 IEGIRRSIDVSMRDDWNRYRLL---NDGLETALFEIIEKVRGEKADPLRIIIANPSERFA 765 Query: 707 LLINMIQTALDRFIDDAVYGLDAIIGRRIRHGTISSELRGTLEQAQLIGQRPRSGADYDA 766 LL +I D F + +GL++ + IRHG + E+R L L+ + + Sbjct: 766 LLRKIITVLRDEFTMNKEFGLNSNLSTNIRHGYVEREIRAPLLARNLVTNTDKG---FYL 822 Query: 767 PKRI---MADLANPSINKRGVVRAIGRFSAAIDLLVAQLRDEVFQCKPKGKLEPVFELPI 823 P + D +P R + +FS ID + ++ ++ + + E +F+ I Sbjct: 823 PNKFWLERLDSGDPEEEAR-LSALFNKFSMRIDDEIDRVNRKLLRVNSEETPEGLFKYGI 881 Query: 824 STLMFAAARDSAATAPSVVSFLAELFDTFWFMLSIYTDRHRVKVKHYTENALKEAFSKLL 883 S AA + ++ S F+ +F FW R + Y ++ + L Sbjct: 882 SDTALMAADATWSSKESFDEFIDAVFSIFWEGTQRNLVMVRAALTSYVLAEFIDSLNALA 941 Query: 884 ADFKGARYTDVL--LHSSVQKASEELQRRAGVIAAWIQIPKARSSGRTYSLKLVFDAAIA 941 D ++ L L ++ E + +A+W + + + + + L + F A + Sbjct: 942 QDIATDGFSQRLPDLEHAITMVQTETRAAVERVASWFTL-SSNNEYQDFDLAIAFQAGMN 1000 Query: 942 HCKARWANFEPVSVESIDASIRLDAHGYPIVFDALRIALENIALHSGVRQGNRVETSIGF 1001 + + N + + I ++ PI + L+N A H G R + ++ S+ Sbjct: 1001 TVRTYFRNLSIQEDYASNGEIIMNGWCLPIFARLFFLILDNAATH-GARNRSHLKISMFV 1059 Query: 1002 NEDCTKICFNIVSDASKDSSSKEKIARVESIREDIEKRSFADRAKRTSGSGLAKLATLVQ 1061 + +D D ++ E R I D + + GSG K+ L++ Sbjct: 1060 EVRENHLFIKATNDLPVDHNNAELAERAAEINRDYGQARAMELLSEEGGSGYPKIWKLLK 1119