BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4465.p (159 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001967505.1| orf_Bo104 [Agrobacterium tumefaciens] >gi|71... 83 1e-14 ref|ZP_02882942.1| response regulator receiver protein [Burkhold... 79 3e-13 ref|YP_001742407.1| response regulator [Escherichia coli SMS-3-5... 75 3e-12 ref|YP_624479.1| response regulator receiver protein [Burkholder... 74 9e-12 ref|ZP_00235855.1| response regulator [Bacillus cereus G9241] >g... 74 1e-11 >ref|YP_001967505.1| orf_Bo104 [Agrobacterium tumefaciens] gb|AAZ50492.1| orf_Bo104 [Agrobacterium tumefaciens] Length = 158 Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 1/153 (0%) Query: 1 MVERKQVLIVEDSDAKLASVISALERTSSGIEIEYAKSVKSALKKLRTAKFSLVIADMSL 60 MV++ +L+VED K ++ L + + I A+SV SAL + T + L++ DMSL Sbjct: 1 MVKKPTILLVEDEAPKRDHIVRLLHELNPQLAIVTARSVNSALDVVETTEVDLMLLDMSL 60 Query: 61 PTYDVKSRERGGTARPFGGIEIFDFLQINSISTSIIVVSSYPALV-DGSTSLTLSDLAAQ 119 PT+D RE GG + FGG EI +Q+ +S +++++ Y DG ++ L L + Sbjct: 61 PTFDAGDRESGGRPQGFGGAEILRMMQMAELSCPVVIITGYEGFAKDGGLTVDLDQLRRE 120 Query: 120 LKDKYSRLFVGCVFFDSAYLTWEVEFQSLVKDV 152 ++ + + ++S Y W+ S ++ + Sbjct: 121 WIAEFEGIVSSVLHYNSTYDEWKTTLSSTLQKL 153 >ref|ZP_02882942.1| response regulator receiver protein [Burkholderia graminis C4D1M] gb|EDT11226.1| response regulator receiver protein [Burkholderia graminis C4D1M] Length = 151 Score = 79.0 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 45/146 (30%), Positives = 75/146 (51%) Query: 7 VLIVEDSDAKLASVISALERTSSGIEIEYAKSVKSALKKLRTAKFSLVIADMSLPTYDVK 66 +++VED++ K V S + + A S S + + ++ L++ D+SLPTY+ Sbjct: 5 IMLVEDNEHKRERVRSLIREVLPDAILYEAASYASGCQLAESREYRLIVLDISLPTYERA 64 Query: 67 SRERGGTARPFGGIEIFDFLQINSISTSIIVVSSYPALVDGSTSLTLSDLAAQLKDKYSR 126 + E GG RPFGG EI + I+ ++ Y A D S T DL L + Sbjct: 65 AGENGGRFRPFGGQEIARKILRRGTRARILFITQYQAFSDRGNSFTFEDLGKSLSSECGD 124 Query: 127 LFVGCVFFDSAYLTWEVEFQSLVKDV 152 F+G V+FDS+ +W++E + +KD+ Sbjct: 125 NFLGLVYFDSSKSSWKLEVEKKLKDL 150 >ref|YP_001742407.1| response regulator [Escherichia coli SMS-3-5] gb|ACB16795.1| response regulator [Escherichia coli SMS-3-5] Length = 149 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 46/148 (31%), Positives = 75/148 (50%) Query: 6 QVLIVEDSDAKLASVISALERTSSGIEIEYAKSVKSALKKLRTAKFSLVIADMSLPTYDV 65 ++L+VED + K VI LE S+ + ++ AKS SA+ + + L+I DMSLPTYD Sbjct: 2 KILLVEDIEYKRDKVIGLLESISADVSVDVAKSYVSAVNSATSKTYDLIILDMSLPTYDK 61 Query: 66 KSRERGGTARPFGGIEIFDFLQINSISTSIIVVSSYPALVDGSTSLTLSDLAAQLKDKYS 125 E GG R +GG +I L ++V++ + + L+ +L Sbjct: 62 GPNENGGRFRVYGGKDIIRKLMRGKEHPVVVVLTQHTTFGEIGEQKNTDTLSQELNALMG 121 Query: 126 RLFVGCVFFDSAYLTWEVEFQSLVKDVL 153 F+G V +DS W+ E + +V+D+L Sbjct: 122 SKFIGIVKYDSTKPQWKDEIKKVVQDLL 149 >ref|YP_624479.1| response regulator receiver protein [Burkholderia cenocepacia AU 1054] ref|YP_837369.1| response regulator receiver protein [Burkholderia cenocepacia HI2424] gb|ABF79506.1| response regulator receiver protein [Burkholderia cenocepacia AU 1054] gb|ABK10476.1| response regulator receiver protein [Burkholderia cenocepacia HI2424] Length = 150 Score = 73.6 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 75/146 (51%) Query: 6 QVLIVEDSDAKLASVISALERTSSGIEIEYAKSVKSALKKLRTAKFSLVIADMSLPTYDV 65 ++ ++ED+ K + + L+ + I S ++ LK + T +V+ DM+LPT+D Sbjct: 2 KIYVIEDNQLKADLICAYLQEHFTDASIRLYGSFQTGLKAIETTCPDIVLLDMNLPTFDR 61 Query: 66 KSRERGGTARPFGGIEIFDFLQINSISTSIIVVSSYPALVDGSTSLTLSDLAAQLKDKYS 125 R G RP GG ++ L++ IST ++V++ +G ++ +++ ++ Sbjct: 62 GPNVREGRNRPLGGYDLMRKLRLRDISTRVVVITQLEHFGEGEDEMSFAEMTTLCTKEFP 121 Query: 126 RLFVGCVFFDSAYLTWEVEFQSLVKD 151 +FVG V+F + W+ + +L+ + Sbjct: 122 SMFVGSVYFSPSDNEWQDDLNNLIPN 147 >ref|ZP_00235855.1| response regulator [Bacillus cereus G9241] gb|EAL16508.1| response regulator [Bacillus cereus G9241] Length = 154 Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 49/153 (32%), Positives = 85/153 (55%), Gaps = 3/153 (1%) Query: 6 QVLIVEDSDAKLASVISALERTSSGIEIEYAKSVKSALKKLRTAKFSLVIADMSLPTYDV 65 ++LI+ED K ++ L S IE S KS LK++ K++L+I DMS+PT+D+ Sbjct: 2 KILIIEDDQNKRKQLVQYLSEILSNPIIECRLSYKSGLKEIINNKYNLIILDMSMPTFDI 61 Query: 66 KSRERGGTARPFGGIEIFDFLQINSISTSIIVVSSYPALVDGSTSLTLSDLAAQLKDKYS 125 + E GG PF G EI ++ +I IVV+ + D SL L +L +L+++Y Sbjct: 62 TTTESGGKPLPFAGKEILRQMKRRNIKIPTIVVTQFEKFGDYEKSLNLEELRCELEEEYL 121 Query: 126 RLFVGCVFFDSAYLTWE---VEFQSLVKDVLND 155 +++ V+++ A +W +E ++K V++D Sbjct: 122 GIYIDTVYYNPASSSWRKFLLEKLQMIKGVMDD 154