BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4464.p (413 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08411796.1| hypothetical protein RSWS8N_00445 [Rhodobacte... 207 3e-51 ref|YP_001967504.1| orf_Bo103 [Agrobacterium tumefaciens] >gi|71... 196 4e-48 ref|YP_001315001.1| response regulator receiver protein [Sinorhi... 172 1e-40 ref|YP_411242.1| response regulator receiver domain-containing p... 163 6e-38 ref|YP_002962248.1| hypothetical protein MexAM1_META1pCDS1135482... 159 7e-37 >ref|ZP_08411796.1| hypothetical protein RSWS8N_00445 [Rhodobacter sphaeroides WS8N] gb|EGJ20501.1| hypothetical protein RSWS8N_00445 [Rhodobacter sphaeroides WS8N] Length = 408 Score = 207 bits (527), Expect = 3e-51, Method: Composition-based stats. Identities = 144/413 (34%), Positives = 224/413 (54%), Gaps = 15/413 (3%) Query: 6 LSVLLVEDTPAKKRKLFERMRASPDIFSDPDVVGCTADAIKRLQEKQYDLMVLDIAVPHR 65 L VL+V+D P + R L + + ++ + T +A L+ QYDL++LDI VP Sbjct: 2 LKVLIVDDHPTRYRPLTDALAKLGVQRANIKFLSSTNEAHNELENNQYDLLILDILVPAW 61 Query: 66 ADGDPNEQNSIDLLAAIDEGIGNIKRPRHVLPISADEQS-EKVSEFFKGRPWGCIHYRED 124 D D ++ NS DLL AI I++PR+++ I+AD + ++ ++ F+ W + Y Sbjct: 62 PDLDADQVNSTDLLTAIQHE-SAIQKPRYIVGITADLSTVDESTKEFERNTWTVVPYSAV 120 Query: 125 SDEALDIIVKIAQWI--HRKVSDEATISKCDIFILTALEEPEFTAVEAAFPELGHFEPLD 182 + + I+ A+++ + + SD+ + D+ I+ AL+EPE V G +PLD Sbjct: 121 DESWVQRIINCARYLMNNYERSDKQEFN-FDLAIVCALKEPELEEVLKLPWCWGEQKPLD 179 Query: 183 ATQLVRYGEIACDGNKISVALGFAQRMGPVASAVLCTKAIELLKPKLILMAGICAAVGDK 242 G D VA + +MG V++AVL K IE L+PKLI M GICA DK Sbjct: 180 DVTFFWEGSFELDQITYKVAALRSAKMGMVSAAVLTNKVIERLRPKLIAMTGICAGHRDK 239 Query: 243 ANIGDLVVADASWDWQSGKY-VDKGSADFELAPHQLNVPAKVHALLLKVKRDSGFWMSFN 301 +GD+VVAD +WD+QSGK ++ A E +PHQ+ + + + ++ D Sbjct: 240 TQLGDVVVADPAWDFQSGKLKLEDKKAKMEFSPHQIPISHFLRSRFEQMTTDR----RMV 295 Query: 302 KDVID-LKIDVP---KLVRGPVATGASVIADERVIKKIREDQNKNVVGLDMETYAVYAAC 357 D++ D P KL GP+A+GA+V+AD + I ++RE QN++++GL+ME Y VYAA Sbjct: 296 ADIVGRFGSDAPSGFKLRIGPIASGAAVMADGKAIDEVREFQNRDLIGLEMEIYGVYAAA 355 Query: 358 ASAGY-NVGALSLKAVCDKANKEKDDRYQPFAAKVSAQSVKHLVSNYGNELLA 409 A L+LK VCD A+ +K D Q FAA SAQ ++ V + +L A Sbjct: 356 QQASSPQPKFLALKGVCDFADPDKHDGAQRFAAFASAQILRKYVERFAKDLFA 408 >ref|YP_001967504.1| orf_Bo103 [Agrobacterium tumefaciens] gb|AAZ50491.1| orf_Bo103 [Agrobacterium tumefaciens] Length = 403 Score = 196 bits (499), Expect = 4e-48, Method: Composition-based stats. Identities = 136/406 (33%), Positives = 218/406 (53%), Gaps = 6/406 (1%) Query: 6 LSVLLVEDTPAKKRKLFERMRASPDIFSDPDVVGCTADAIKRLQEKQYDLMVLDIAVPHR 65 + +L+V+D P + ++A D+V DA RL ++YDL++LDI VP Sbjct: 1 MQILIVDDQPKRYDIFIAELKAMGIDRGSVDIVTSCNDARARLMGQEYDLLLLDILVPLH 60 Query: 66 ADGDPNEQNSIDLLAAIDEGIGNIKRPRHVLPISADEQSEKVS-EFFKGRPWGCIHYRED 124 + N QN+IDLL I + K P ++L I+AD + + F+ W ++Y Sbjct: 61 PEDSENPQNAIDLLFEIRQNDLTSKAP-YILGITADRAAAGSALAQFEDWCWTVLNYSRS 119 Query: 125 SDEALDIIVKIAQWIH-RKVSDEATISKCDIFILTALEEPEFTAVEAAFPELGHFEPLDA 183 +DE + + +I R E + ++ I+ ALE+PE + V PLD Sbjct: 120 TDEWMHRALNCVTFIRGRGKKPENSNLGTEVVIICALEDPELSEVLKLPWNWQTSRPLDD 179 Query: 184 TQLVRYGEIACDGNKISVALGFAQRMGPVASAVLCTKAIELLKPKLILMAGICAAVGDKA 243 T + G+ D +V RMG VASA+ I L+PKLI M GICA V K Sbjct: 180 TIFIHDGKFVVDDKSYNVCAVCLPRMGMVASAIAANTLISTLRPKLIAMTGICAGVRGKV 239 Query: 244 NIGDLVVADASWDWQSGKYVDKGSADFELAPHQLNVPAKVHALLLKVKRDSGFWMSFNKD 303 +GD++ AD +WD+QSGK+ D + F PH + PAKV +L+++ DS + + Sbjct: 240 KLGDVLFADPAWDFQSGKW-DGETGRFLFRPHHIPAPAKVRNHILQLRGDSSALEAIRLE 298 Query: 304 VIDLKIDVPKLVRGPVATGASVIADERVIKKIREDQNKNVVGLDMETYAVYAAC-ASAGY 362 K D ++V GP+A+G++V++D R+I+ ++ Q++ ++G++ME Y +YAA A++ Sbjct: 299 FEGTKPDTSRIVLGPLASGSAVLSDGRIIQGVK-GQHQELIGVEMEIYGIYAAAHAASSP 357 Query: 363 NVGALSLKAVCDKANKEKDDRYQPFAAKVSAQSVKHLVSNYGNELL 408 L++K VCD A+ +K D YQ +AA SAQ ++ L+ YGN L+ Sbjct: 358 QPTFLAVKGVCDFADPDKADGYQRYAAYSSAQVLRLLLERYGNRLI 403 >ref|YP_001315001.1| response regulator receiver protein [Sinorhizobium medicae WSM419] gb|ABR65068.1| response regulator receiver protein [Sinorhizobium medicae WSM419] Length = 406 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 136/407 (33%), Positives = 213/407 (52%), Gaps = 31/407 (7%) Query: 6 LSVLLVEDTPAKKRKLFERMRASPDIFSDPDVVGCTADAIKRLQEKQYDLMVLDIAVPHR 65 + VL+VED K ++ + + SD V A A + L++ +DLM+LD+ +P R Sbjct: 1 MKVLIVEDDNQKYNRVHAVLEQAGVAGSDITHVIAAAPAYELLRQTLFDLMLLDVNIPRR 60 Query: 66 -ADGDPNEQNSIDLLAAIDEGIGNIKRPRHVLPISADEQSEKVSEF---FKGRPWGCIHY 121 D P ++LL + +++RP +++ ++A E + V+EF F+ + W +HY Sbjct: 61 LGDRKPQRGGGLELLKDLGRE-SDLRRPTYIVGLTAYE--DVVAEFGSAFEDQLWSLVHY 117 Query: 122 REDSDEALDIIVKIAQWIH-----RKVSDEATISKCDIFILTALEEPEFTAVEAAFPELG 176 +E SD+ + ++ +I R SD T CD+ I+TAL+ EF AV++ P Sbjct: 118 KESSDQWIAQLLVKVNYIQAANRSRNFSDGETYG-CDLAIITALDTVEFDAVQS-LPL-- 173 Query: 177 HFEPL----DATQLVRYGEIACDGNKISVALGFAQRMGPVASAVLCTKAIELLKPKLILM 232 +EPL D T+ + G +A SV A RMG AS +L +K I +P+ I M Sbjct: 174 SWEPLRLQHDETRYLA-GTLATSSGTKSVIAAAAPRMGIPASGILSSKIIHQFRPRFIAM 232 Query: 233 AGICAAVGDKANIGDLVVADASWDWQSGKY-VDKGSADFELAPHQLNVPAKVHALLLKVK 291 GICA DK ++GDL+VA+ +WDW SGK ++G F +PHQL++ +LL + Sbjct: 233 VGICAGRKDKVSLGDLIVAEPTWDWGSGKISSEEGEPKFMPSPHQLDIDPDTTSLLKAMT 292 Query: 292 RDSGFWMSFNKDVIDLKIDVPKLV----RGPVATGASVIADERVIKKIREDQNKNVVGLD 347 +D+ K K PK GP+ +GA+V+A + ++ DQ++ ++G+D Sbjct: 293 KDAVLLAGIKKASRGTK---PKTELSAHMGPLVSGAAVVAHKPTFDQLL-DQHRGILGVD 348 Query: 348 ME-TYAVYAACASAGYNVGALSLKAVCDKANKEKDDRYQPFAAKVSA 393 ME AA SA L +K V D A++ KDD YQ FAA VSA Sbjct: 349 MEAYAVAAAAMGSAKPRPKFLIVKGVSDFADEHKDDDYQEFAASVSA 395 >ref|YP_411242.1| response regulator receiver domain-containing protein [Nitrosospira multiformis ATCC 25196] gb|ABB73850.1| response regulator receiver domain protein (CheY-like) [Nitrosospira multiformis ATCC 25196] Length = 403 Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats. Identities = 131/409 (32%), Positives = 212/409 (51%), Gaps = 23/409 (5%) Query: 6 LSVLLVEDTPAKKRKLFERMRASPDIFSDPDVVGCTADAIKRLQEKQ-YDLMVLDIAVPH 64 + +L+V+D K ++F + A I TA A + L +Q YDL+++D+ +P Sbjct: 1 MKILIVDDEYRKVEEIFNVL-ADAGISCAGVKHETTAQAARILLRRQDYDLLIIDLHLPA 59 Query: 65 RADGDPNEQNSIDLLAAI--DEGIGNIKRPRHVLPISADEQSEKVSEFFKGRPWGCI--H 120 G P+ + I L I DE +K P VL I+ E+ + S + K G I Sbjct: 60 AIGGKPDNEGGITFLDMIRLDE---KVKLPASVLFITGREELIE-SAYTKVIERGAILCQ 115 Query: 121 YREDSDEALDIIVKIAQWIHRKVSDEATISKCDIFILTALEEPEFTAVEAAFPELGHFEP 180 Y DSDE I++ A++ ++++ + + D+ I+TAL PE AV + Sbjct: 116 YHSDSDEWKKILIGRAKYDSQRLARDEQV---DVVIVTALRNPELDAVLNLPYQWIQKRI 172 Query: 181 LDATQLVRYGEIACDGNKISVALGFAQRMGPVASAVLCTKAIELLKPKLILMAGICAAVG 240 D YG+I + ISV R G +SA + +K + KPK++LM GICA + Sbjct: 173 KDDPLTYHYGKIPRIDSNISVVAVSPNRKGMPSSAAVASKLALMFKPKILLMVGICAGIR 232 Query: 241 DKANIGDLVVADASWDWQSGKY--VDKGSADFELAPHQLNVPAKVHALLLKVKRD----S 294 DK ++GD++VAD +WDW SGK+ GS F AP Q+ + + + + + D + Sbjct: 233 DKCSLGDIIVADPTWDWGSGKHGLDSNGSPVFHAAPRQVPLNSALSQVASDLANDESVMN 292 Query: 295 GFWMSFNKDVIDLKIDVPKLVRGPVATGASVIADERVIKKIREDQNKNVVGLDMETYAVY 354 G ++++V K+ K+ GP+A+GASVIAD+R + I Q++ ++ ++ME YAV Sbjct: 293 GIRKGWSEEVPGGKL---KVHIGPMASGASVIADDRSARLIAIQQHRELIAIEMEAYAVM 349 Query: 355 AACASAGY-NVGALSLKAVCDKANKEKDDRYQPFAAKVSAQSVKHLVSN 402 AA N+ A+ +K+VCD A+ EK+D +Q +A+ SA L N Sbjct: 350 AAAEYTSIPNLTAMIIKSVCDFADAEKNDTWQKYASYTSAAFADQLFRN 398 >ref|YP_002962248.1| hypothetical protein MexAM1_META1pCDS1135482D [methylobacterium extorquens AM1] gb|ACS38971.1| Hypothetical protein; RMQ09748 [Methylobacterium extorquens AM1] Length = 408 Score = 159 bits (403), Expect = 7e-37, Method: Composition-based stats. Identities = 132/405 (32%), Positives = 207/405 (51%), Gaps = 26/405 (6%) Query: 6 LSVLLVEDTPAKKRKLFERMRASPDIFSDPDVVGCTADAIKRLQEKQYDLMVLDIAVPHR 65 LSVL+VED K ++ E + + +A A K+LQ++++D+M+LDI +P R Sbjct: 2 LSVLIVEDDNQKFGRVREVLLQEGVAEDNICQAISSASAFKQLQKRRFDIMILDINIPRR 61 Query: 66 ADGDPNEQNS-IDLLAAIDEGIGNIKRPRHVLPISA-DEQSEKVSEFFKGRPWGCIHYRE 123 +G+P + + L I + I +PRH++ ++A D+ E+ + F R W + Y Sbjct: 62 -EGEPERADEGVSFLDEIYKQT-EIHKPRHIVGLTAHDDIVERFGDRFSDRLWTLVKYSV 119 Query: 124 DSDEALDIIVKIAQWIH-----RKVSDEATISKCDIFILTALEEPEFTAVEAAFPELGHF 178 +SD+ I ++I SD T D+ I+ ALE+ E A+ + + Sbjct: 120 NSDQWASRIKSQVEYISAFKRSEYFSDGVTFG-ADLAIICALEDVELEALRSCRDDWSTL 178 Query: 179 E-PLDATQLVRYGEIACDGNKISVALGFAQRMGPVASAVLCTKAIELLKPKLILMAGICA 237 P D T+ + I +G S+ A RMG +AVL TK I +P+ + M GICA Sbjct: 179 RLPHDETRYITC-NIEVEGKSFSIIAAAAPRMGMPTTAVLATKMIFNFRPRYLAMVGICA 237 Query: 238 AVGDKANIGDLVVADASWDWQSGKYVDKGSAD-FELAPHQLNVPAKVHALLLKVKRDSGF 296 KAN+GD+++AD WDW SGK F+ +PH L++ + ++KRD Sbjct: 238 GRYGKANLGDIILADPCWDWGSGKISSVNDEPVFQPSPHHLDLEQDFVEAIREMKRDVAL 297 Query: 297 WMSFNKDVIDLKIDVPK------LVRGPVATGASVIADERVIKKIREDQNKNVVGLDMET 350 I K PK L GP+A+GA V+AD+ ++ +DQ++N++G+DME Sbjct: 298 LAQ-----IKAKYQGPKPPHELSLHIGPLASGAVVVADKPTFHRL-QDQHRNLLGIDMEA 351 Query: 351 YAVYAACASAGY-NVGALSLKAVCDKANKEKDDRYQPFAAKVSAQ 394 Y V AC AG + KAV D A+K+K D +QP+AA SA+ Sbjct: 352 YGVAVACRGAGKPRPQFIVAKAVSDFADKDKADDFQPYAAHNSAR 396