BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4463.p (375 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_04576661.1| integrase [Oxalobacter formigenes HOxBLS] >gi... 323 2e-86 ref|YP_004845846.1| site-specific recombinase, phage integrase f... 249 6e-64 ref|YP_003374774.1| phage integrase [Xanthomonas albilineans GPE... 248 1e-63 ref|YP_001412328.1| integrase family protein [Parvibaculum lavam... 236 3e-60 ref|YP_915218.1| phage integrase family protein [Paracoccus deni... 234 1e-59 >ref|ZP_04576661.1| integrase [Oxalobacter formigenes HOxBLS] gb|EEO27623.1| integrase [Oxalobacter formigenes HOxBLS] Length = 305 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 167/306 (54%), Positives = 217/306 (70%), Gaps = 2/306 (0%) Query: 47 QAQEWASRQEADMRALKFQDVRIIADKTLASAIDRYVEEQTQVRPLGKNKKAVLSNLKLA 106 QAQ WA E+++ A K++D R ++D A IDRY E ++P G+NK V+S L+ Sbjct: 1 QAQIWARNIESEIDARKYEDTRTLSDYKFAELIDRYNNEIGSIKPFGRNKVDVISRLRKM 60 Query: 107 LGKYTMPALTGDVLTDYVKDRKAAGAGGVTIAVDLTYLTSVIKAARNIWRWPVNSDAIDQ 166 LG M LT + D+VK R GAGGVTI++DL+Y++S+ +AA+ +W+ PV+ D + Sbjct: 61 LGHVYMDELTESQIMDFVKIRMGNGAGGVTISIDLSYMSSIFRAAKQLWKIPVSIDVLLS 120 Query: 167 ARAYMAHIGLSTRSKERTRRPTKVELSNISTWFLVKVRQRVPMADLIAFAVDTAMRLSEI 226 RA + ++G+ TRSKER RRPT EL+ + +F + + PMAD+I FA+ +AMR SEI Sbjct: 121 VRANLKYMGIKTRSKERERRPTVEELNLLDQYFRSRPFMKTPMADIIQFAIISAMRDSEI 180 Query: 227 INLKWTDLNEQDKTIIIRNRKHPRAKIGNDQEVPLLGDAFDIVKRQPKVGKEERIFPVTE 286 + W+DLN DKTIIIR+RKHP+ K GNDQEVPLLG AFDIV RQP+ ERIF Sbjct: 181 TRITWSDLNIHDKTIIIRDRKHPKEKDGNDQEVPLLGKAFDIVMRQPRT--SERIFSHQP 238 Query: 287 GTVSSLFPRACKALGIEDLRFHDLRHEGVSRLFERGYTIEQVALVSGHRDWKMLARYTQI 346 T+S+LF RACK L I+DLRFHDLRHEG+SRLFE+GYTIEQV LVSGHRD K L RY Q+ Sbjct: 239 HTISTLFTRACKFLQIDDLRFHDLRHEGISRLFEQGYTIEQVMLVSGHRDPKQLFRYVQL 298 Query: 347 RAKDLH 352 +AKDLH Sbjct: 299 KAKDLH 304 >ref|YP_004845846.1| site-specific recombinase, phage integrase family protein [Pseudogulbenkiania sp. NH8B] dbj|BAK75432.1| site-specific recombinase, phage integrase family protein [Pseudogulbenkiania sp. NH8B] Length = 472 Score = 249 bits (636), Expect = 6e-64, Method: Composition-based stats. Identities = 144/350 (41%), Positives = 211/350 (60%), Gaps = 15/350 (4%) Query: 16 MATFQKIGKR-----WRARIRRKG----FPAQSEMFDTKAQAQEWASRQEADMRALKFQD 66 MAT K KR + A++R K ++S F T+ A+ WA R E F + Sbjct: 1 MATITKYRKRNGELSYSAQVRVKQDGKVVFSKSRSFPTRDAAESWAKRIEVQSAEPGFIE 60 Query: 67 VRIIADKTLASAIDRYVEEQTQVRPLGKNKKAVLSNL-KLALGKYTMPALTGDVLTDYVK 125 + T+ ++RY +E T+ LG++K VL L + ++ + LT + ++ K Sbjct: 61 RHKLGKVTIGELLERYRDELTEAGRLGRSKGYVLDLLLRSSISEIAAINLTSADVVEHCK 120 Query: 126 DRKAAGAGGVTIAVDLTYLTSVIKAARNIWRWPVNSDAIDQARAYMAHIGLSTRSKERTR 185 R AAGAG T+ D+ YL +++ A W PV+ +D A A + +GL+ +S+ R+R Sbjct: 121 VRAAAGAGPATVQQDVIYLRTMLDHAARAWHLPVSVAPVDAASAPVRKLGLTGKSRSRSR 180 Query: 186 RPTKVELSNISTWFLVKV---RQRVPMADLIAFAVDTAMRLSEIINLKWTDLNEQDKTII 242 RPT+ EL + W + +P D++ FA+ +AMRL EI ++W DLNEQ +T++ Sbjct: 181 RPTEEELELLLGWLASREAGHNASIPHRDIVRFAIASAMRLGEIGRIEWADLNEQRRTVM 240 Query: 243 IRNRKHPRAKIGNDQEVPLLGDAFDIVKRQPKVGKEERIFPVTEGTVSSLFPRACKALGI 302 IR RK P K+ NDQEVPLLG+A++IV RQP+ E RIFP +VS+ F R CKA+G+ Sbjct: 241 IRQRKSPSNKLTNDQEVPLLGEAWEIVARQPRT--EARIFPYNMDSVSAAFERGCKAMGV 298 Query: 303 EDLRFHDLRHEGVSRLFERGYTIEQVALVSGHRDWKMLARYTQIRAKDLH 352 DLRFHDLRHEG SRLFE+GY+I++VALV+GH+ W L RYTQ++ + LH Sbjct: 299 IDLRFHDLRHEGASRLFEQGYSIQEVALVTGHQSWNNLKRYTQLKPESLH 348 >ref|YP_003374774.1| phage integrase [Xanthomonas albilineans GPE PC73] emb|CBA14787.1| putative phage integrase protein [Xanthomonas albilineans] Length = 347 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 143/343 (41%), Positives = 208/343 (60%), Gaps = 17/343 (4%) Query: 14 NQMATFQKIGKRWRARIRRKGFPAQSEMFDTKAQAQEWASRQEADMR---ALKFQDVRII 70 +Q+A +K GK+WRA +R KG P S+ F+ + A++WA E +R AL + + Sbjct: 12 HQVALIEKRGKKWRALVRLKGHPTASKTFNGRKAAEDWARAAEDALRGGTALPQESI--- 68 Query: 71 ADKTLASAIDRYVEEQTQVRPLGKNKKAVLSNLKLALGKYTMPALTGDVLTDYVKDRKAA 130 TL++ IDRYV+E ++ RP+ K+ L + +LG + +LTG + ++ RKA Sbjct: 69 ---TLSALIDRYVKEMSKFRPVSATKRGNLKRWEESLGDREVASLTGQDILTHIGQRKA- 124 Query: 131 GAGGVTIAVDLTYLTSVIKAARNIWRWPVNSDAIDQARAYMAHIGLSTRSKERTRRPTKV 190 G T+ ++L +L V+ A R++W + D + +R + G + ER RRPT Sbjct: 125 --GPATMTMELGFLGEVLAAGRSLWGMTI-PDVVASSRPVLRRAGAIAKPVERDRRPTGK 181 Query: 191 ELSNISTWFLVKVRQRVPMADLIAFAVDTAMRLSEIINLKWTDLNEQDK-TIIIRNRKHP 249 EL +++ +F + +PM DLI FA+D+AMR+ EI+ L+W D DK TI IR+RK P Sbjct: 182 ELDDLAAFFRFNLGA-IPMRDLIPFAIDSAMRMGEIVALRWEDYRSGDKPTIQIRDRKDP 240 Query: 250 RAKIGNDQEVPLLGDAFDIVKRQPKVGKEERIFPVTEGTVSSLFPRACKALGIEDLRFHD 309 K GN+Q VPLLG +I++RQ + G IFP ++ + F RAC L IEDL FHD Sbjct: 241 MDKRGNNQWVPLLGQTVEIIERQQRAGP--LIFPYKPDSIGAAFRRACMRLQIEDLHFHD 298 Query: 310 LRHEGVSRLFERGYTIEQVALVSGHRDWKMLARYTQIRAKDLH 352 LRHEG SRLFERGY+I +VA+V+GHRDWK L RYT + + LH Sbjct: 299 LRHEGASRLFERGYSIPEVAIVTGHRDWKSLKRYTNLTPESLH 341 >ref|YP_001412328.1| integrase family protein [Parvibaculum lavamentivorans DS-1] gb|ABS62671.1| integrase family protein [Parvibaculum lavamentivorans DS-1] Length = 380 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 147/345 (42%), Positives = 204/345 (59%), Gaps = 9/345 (2%) Query: 16 MATFQKI-GKRWRARIRRKGFPAQSEMFDTKAQAQEWASRQEADMRALKFQDVRIIAD-K 73 MAT +K+ WR ++RRKG +E F +A+ WA E + + R Sbjct: 1 MATVKKLPSGNWRVQVRRKG-RYIAETFRRHKEAEAWALDMERRIDQGEVPSSRTRKKPT 59 Query: 74 TLASAIDRYVEEQTQV-RPLGKNKKAVLSNLKLALGKYTMPALTGDVLTDYVKDRKAAGA 132 T ID ++ +V R ++K L LK LGK M L + L + K+R GA Sbjct: 60 TFGDLIDLHLAALQEVGRSPRRSKAFTLDALKAKLGKVRMADLNRERLIRFGKERLKEGA 119 Query: 133 GGVTIAVDLTYLTSVIKAARNIWRWPVNSDAIDQARAYMAHIGLSTRSKERTRRPTKVEL 192 G VT+ +DL+Y+ ++I A + V+ +A+D AR + H+G+ RS+ R RRPT EL Sbjct: 120 GPVTVGMDLSYIKTIITHAAAVHGIAVSPEAVDLARTALKHLGVVGRSRSRDRRPTADEL 179 Query: 193 SNISTWFLVKVRQRVPMADLIAFAVDTAMRLSEIINLKWTDLNEQDKTIIIRNRKHPRAK 252 + +F RQ +P+A +I FAV TAMR EI ++W D++ +T++IR+RK PR Sbjct: 180 KRLIAYFDANPRQLIPLARIIRFAVATAMRQDEICRIRWGDIDADTRTVLIRDRKDPRET 239 Query: 253 IGNDQEVPLLG----DAFDIVKRQPK-VGKEERIFPVTEGTVSSLFPRACKALGIEDLRF 307 GNDQ+VPLL DA+ I++ Q V K +RIFP +V + F RAC+ L IE+L F Sbjct: 240 DGNDQKVPLLAATGFDAWAILREQKTAVAKGDRIFPYNARSVGTAFRRACRDLKIENLHF 299 Query: 308 HDLRHEGVSRLFERGYTIEQVALVSGHRDWKMLARYTQIRAKDLH 352 HDLRHEG SRLFE G+TIEQVALV+GHRDWKML RYT +R + LH Sbjct: 300 HDLRHEGASRLFEAGFTIEQVALVTGHRDWKMLKRYTNLRPEHLH 344 >ref|YP_915218.1| phage integrase family protein [Paracoccus denitrificans PD1222] gb|ABL69522.1| phage integrase family protein [Paracoccus denitrificans PD1222] Length = 351 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 141/344 (40%), Positives = 195/344 (56%), Gaps = 8/344 (2%) Query: 16 MATFQKI-GKRWRARIRRKGFPAQSEMFDTKAQAQEWASRQEADMRALKFQDVRIIADKT 74 MAT K+ WR ++RRKG SE F + A+ WA E + + R+ A KT Sbjct: 1 MATISKLPSGSWRVQVRRKGHYI-SESFLRRGDAELWARTVEGKIDRGEPIHTRVAAAKT 59 Query: 75 LASAIDRYVEEQTQV-RPLGKNKKAVLSNLKLALGKYTMPALTGDVLTDYVKDRKAAGAG 133 ID + + V R LG++K A L L L LG L + L ++ + R GAG Sbjct: 60 FGDLIDLHRADLADVGRTLGRSKAASLDFLALRLGALKPAELGREKLVEFGRQRAKEGAG 119 Query: 134 GVTIAVDLTYLTSVIKAARNIWRWPVNSDAIDQARAYMAHIGLSTRSKERTRRPTKVELS 193 VT+ +DL Y+ +++ A + ++ +D AR + +GL + ER RRP++ E+ Sbjct: 120 PVTVGIDLGYIKTILSHAAAVHGIIAPTEGVDLARIALTRLGLVGKGNERDRRPSEEEID 179 Query: 194 NISTWFLVKVRQRVPMADLIAFAVDTAMRLSEIINLKWTDLNEQDKTIIIRNRKHPRAKI 253 I RQ +P+A ++ FA+ TAMR EI +W D N + K ++IR+RK PR K Sbjct: 180 AILKALESNPRQFIPVARVVRFAIATAMRQDEISRARWEDYNPRTKMLLIRDRKDPRRKT 239 Query: 254 GNDQEVPLLG-DAFD----IVKRQPKVGKEERIFPVTEGTVSSLFPRACKALGIEDLRFH 308 GNDQ +PLL FD I +++ VG RIFP ++ + F R C+ LGIEDL FH Sbjct: 240 GNDQRIPLLSVSGFDPCALIEEQRALVGSRGRIFPYNGRSIGTAFRRVCRTLGIEDLHFH 299 Query: 309 DLRHEGVSRLFERGYTIEQVALVSGHRDWKMLARYTQIRAKDLH 352 DLRHE SRLFE G+TIEQVALV+GH+DWKML RYT IR + LH Sbjct: 300 DLRHEATSRLFEAGFTIEQVALVTGHKDWKMLRRYTHIRPEGLH 343