BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4462.p (326 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776974.1| hypothetical protein Hsero_3587 [Herbaspiril... 645 0.0 ref|YP_001354180.1| tRNA-dihydrouridine synthase A [Janthinobact... 561 e-158 ref|YP_001100668.1| tRNA-dihydrouridine synthase A [Herminiimona... 560 e-157 ref|YP_004754083.1| tRNA-dihydrouridine synthase A [Collimonas f... 555 e-156 ref|ZP_04578730.1| tRNA-dihydrouridine synthase A [Oxalobacter f... 511 e-143 >ref|YP_003776974.1| hypothetical protein Hsero_3587 [Herbaspirillum seropedicae SmR1] gb|ADJ65066.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 357 Score = 645 bits (1664), Expect = 0.0, Method: Composition-based stats. Identities = 307/323 (95%), Positives = 315/323 (97%) Query: 1 MMDWTDRHCRVFHRQITRHTWLYTEMVTTGALLHGDVPRHLDFDEQEHPVALQLGGSEPS 60 MMDWTDRHCRVFHRQITRHTWLYTEMVTTGALLHGDVPRHLDFDEQEHPVALQLGGSEP+ Sbjct: 32 MMDWTDRHCRVFHRQITRHTWLYTEMVTTGALLHGDVPRHLDFDEQEHPVALQLGGSEPA 91 Query: 61 DLAHSAKLGEQWGYDEINLNCGCPSERVQKGAFGACLMGEPTLVADCVKAMKDAVSIDVT 120 DLAHSAKLGEQWGYDEINLNCGCPSERVQKGAFGACLMGEPTLVADCVKAM+DAVSIDVT Sbjct: 92 DLAHSAKLGEQWGYDEINLNCGCPSERVQKGAFGACLMGEPTLVADCVKAMRDAVSIDVT 151 Query: 121 VKHRIGIDDVQSYDFVRDFVGQIAEAGCKTFIVHARNAILKGLSPKENREIPPLKYHYAY 180 VKHRIGID+V+SYDFVRDFVGQIAEAGC+TFIVHARNAILKGLSPKENREIPPLKY YAY Sbjct: 152 VKHRIGIDEVESYDFVRDFVGQIAEAGCQTFIVHARNAILKGLSPKENREIPPLKYDYAY 211 Query: 181 QLKQDFPELEILINGGIKTLPEIDEHLKHVDGVMLGREAYHNPYLMATFDARYYGDLDGG 240 QLK+DFP LEILINGGIKTLPEIDEHLKHVDGVMLGREAYHNPYLMA FDARYY L+GG Sbjct: 212 QLKKDFPSLEILINGGIKTLPEIDEHLKHVDGVMLGREAYHNPYLMAGFDARYYAALEGG 271 Query: 241 RQPSRAEVIEAMLPYIKRQLELHGDNGRGLRLNSITRHMLGLLTGMPGARAFRQTLSDSK 300 Q SRAEVIEAMLPYIKRQLELHGDNGRGLRLNSITRHMLGL+ GMPGARAFRQTLSDSK Sbjct: 272 LQRSRAEVIEAMLPYIKRQLELHGDNGRGLRLNSITRHMLGLMAGMPGARAFRQTLSDSK 331 Query: 301 RLALGDPALLLEALQRTQAAQAA 323 RLALGDPALLLEALQRTQAAQAA Sbjct: 332 RLALGDPALLLEALQRTQAAQAA 354 >ref|YP_001354180.1| tRNA-dihydrouridine synthase A [Janthinobacterium sp. Marseille] gb|ABR89283.1| tRNA-dihydrouridine synthase [Janthinobacterium sp. Marseille] Length = 344 Score = 561 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 262/324 (80%), Positives = 291/324 (89%), Gaps = 4/324 (1%) Query: 1 MMDWTDRHCRVFHRQITRHTWLYTEMVTTGALLHGDVPRHLDFDEQEHPVALQLGGSEPS 60 MMDWTDRHCR+FHRQITRHTWLYTEMVTTGALLHGDVPRHLDF+E+EHPVALQLGGSEP+ Sbjct: 23 MMDWTDRHCRMFHRQITRHTWLYTEMVTTGALLHGDVPRHLDFNEEEHPVALQLGGSEPA 82 Query: 61 DLAHSAKLGEQWGYDEINLNCGCPSERVQKGAFGACLMGEPTLVADCVKAMKDAVSIDVT 120 DLA SAKLGEQWGYDE+NLNCGCPSERVQKGAFGACLM E LVADCVKAM+DAVSIDVT Sbjct: 83 DLAKSAKLGEQWGYDEVNLNCGCPSERVQKGAFGACLMNETGLVADCVKAMRDAVSIDVT 142 Query: 121 VKHRIGIDDVQSYDFVRDFVGQIAEAGCKTFIVHARNAILKGLSPKENREIPPLKYHYAY 180 VKHRIGIDD+ SYDFVRDFVG IA+AGC TFIVHARNAILKGLSPKENREIPPL+Y +AY Sbjct: 143 VKHRIGIDDITSYDFVRDFVGTIADAGCNTFIVHARNAILKGLSPKENREIPPLRYEFAY 202 Query: 181 QLKQDFPELEILINGGIKTLPEIDEHLKHVDGVMLGREAYHNPYLMATFDARYYGDLDGG 240 QLK+DFP LEI+INGG KT+ EID HL+HVDGVMLGREAYHNP+LM+TFDARYYG D Sbjct: 203 QLKKDFPALEIIINGGTKTVAEIDTHLQHVDGVMLGREAYHNPFLMSTFDARYYG--DDA 260 Query: 241 RQPSRAEVIEAMLPYIKRQLELHG--DNGRGLRLNSITRHMLGLLTGMPGARAFRQTLSD 298 +RAEV++AM+PYI QL+LHG + G GL++NSITRHMLGL+ G+P +RAFRQTLSD Sbjct: 261 TSKTRAEVVQAMIPYIHAQLQLHGKSEKGGGLKVNSITRHMLGLMAGLPNSRAFRQTLSD 320 Query: 299 SKRLALGDPALLLEALQRTQAAQA 322 SK+LALGDP LLL+AL R Q A Sbjct: 321 SKKLALGDPDLLLQALARMQPLAA 344 >ref|YP_001100668.1| tRNA-dihydrouridine synthase A [Herminiimonas arsenicoxydans] emb|CAL62547.1| tRNA-dihydrouridine synthase A [Herminiimonas arsenicoxydans] Length = 338 Score = 560 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 264/324 (81%), Positives = 288/324 (88%), Gaps = 4/324 (1%) Query: 1 MMDWTDRHCRVFHRQITRHTWLYTEMVTTGALLHGDVPRHLDFDEQEHPVALQLGGSEPS 60 MMDWTDRHCR+FHRQITRHTW YTEMVTTGALLHGDV RHLDF+ +EHPVALQLGGSEP+ Sbjct: 16 MMDWTDRHCRMFHRQITRHTWFYTEMVTTGALLHGDVSRHLDFNHEEHPVALQLGGSEPA 75 Query: 61 DLAHSAKLGEQWGYDEINLNCGCPSERVQKGAFGACLMGEPTLVADCVKAMKDAVSIDVT 120 DLA SAKLGEQWGYDEINLNCGCPSERVQKGAFGACLM E LVADCVKAM+DAV IDVT Sbjct: 76 DLAKSAKLGEQWGYDEINLNCGCPSERVQKGAFGACLMNEAALVADCVKAMRDAVQIDVT 135 Query: 121 VKHRIGIDDVQSYDFVRDFVGQIAEAGCKTFIVHARNAILKGLSPKENREIPPLKYHYAY 180 VKHRIGIDD+ SYDFVRDFVG +AEAGC TFIVHARNA+LKGLSPKENREIPPL+Y +AY Sbjct: 136 VKHRIGIDDIASYDFVRDFVGTVAEAGCNTFIVHARNAVLKGLSPKENREIPPLRYEFAY 195 Query: 181 QLKQDFPELEILINGGIKTLPEIDEHLKHVDGVMLGREAYHNPYLMATFDARYYGDLDGG 240 QLKQDFP+LEI+INGGIKTL EID HL HVDGVMLGREAYHNPYLM+ FDARYYGD+ Sbjct: 196 QLKQDFPQLEIIINGGIKTLAEIDTHLVHVDGVMLGREAYHNPYLMSAFDARYYGDIAAP 255 Query: 241 RQPSRAEVIEAMLPYIKRQLELHG--DNGRGLRLNSITRHMLGLLTGMPGARAFRQTLSD 298 + SRA+V+ AMLPYI+ QLELHG + G GLRLNSITRHMLGL+ G+P AR FRQ+LSD Sbjct: 256 K--SRAQVLHAMLPYIRAQLELHGKSEKGGGLRLNSITRHMLGLMAGLPNARGFRQSLSD 313 Query: 299 SKRLALGDPALLLEALQRTQAAQA 322 SK+LALGDP LLL+AL R Q A Sbjct: 314 SKKLALGDPDLLLQALARMQQPGA 337 >ref|YP_004754083.1| tRNA-dihydrouridine synthase A [Collimonas fungivorans Ter331] gb|AEK63260.1| tRNA-dihydrouridine synthase A [Collimonas fungivorans Ter331] Length = 338 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 261/322 (81%), Positives = 287/322 (89%), Gaps = 1/322 (0%) Query: 1 MMDWTDRHCRVFHRQITRHTWLYTEMVTTGALLHGDVPRHLDFDEQEHPVALQLGGSEPS 60 MMDWTDRHCRVFHRQITRHTWLYTEMVTTGALLHGDVPRHLDF + EHPVALQLGGSE + Sbjct: 18 MMDWTDRHCRVFHRQITRHTWLYTEMVTTGALLHGDVPRHLDFSDVEHPVALQLGGSESA 77 Query: 61 DLAHSAKLGEQWGYDEINLNCGCPSERVQKGAFGACLMGEPTLVADCVKAMKDAVSIDVT 120 DLA SAKLG++WGYDEINLNCGCPSERVQKGAFGACLM E LVADCVKAM+DAVSIDVT Sbjct: 78 DLAKSAKLGQEWGYDEINLNCGCPSERVQKGAFGACLMAEAELVADCVKAMRDAVSIDVT 137 Query: 121 VKHRIGIDDVQSYDFVRDFVGQIAEAGCKTFIVHARNAILKGLSPKENREIPPLKYHYAY 180 VKHRIGID +SY+FVRDFVG +A+AGC+TFIVHARNAILKGLSPKENREIPPLKY YAY Sbjct: 138 VKHRIGIDKTESYEFVRDFVGTVAQAGCQTFIVHARNAILKGLSPKENREIPPLKYEYAY 197 Query: 181 QLKQDFPELEILINGGIKTLPEIDEHLKHVDGVMLGREAYHNPYLMATFDARYYGDLDGG 240 QL +DFPELEI+ING IKT EID HL++VDGVMLGREAYHNPYLMA FD+RYYG D Sbjct: 198 QLARDFPELEIIINGAIKTTEEIDFHLQYVDGVMLGREAYHNPYLMADFDSRYYGAADAA 257 Query: 241 RQPSRAEVIEAMLPYIKRQLELHGDNGRGLRLNSITRHMLGLLTGMPGARAFRQTLSDSK 300 + +RAEVIEAMLPYI++QL LHG +G+GLRLNSITRHMLGL+ G+PGA++FRQ LSDSK Sbjct: 258 PK-TRAEVIEAMLPYIRQQLALHGHDGKGLRLNSITRHMLGLMAGVPGAKSFRQALSDSK 316 Query: 301 RLALGDPALLLEALQRTQAAQA 322 RLALGDP LL +AL Q A Sbjct: 317 RLALGDPRLLTDALANMQPLAA 338 >ref|ZP_04578730.1| tRNA-dihydrouridine synthase A [Oxalobacter formigenes OXCC13] gb|EEO29703.1| tRNA-dihydrouridine synthase A [Oxalobacter formigenes OXCC13] Length = 330 Score = 511 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 236/314 (75%), Positives = 273/314 (86%), Gaps = 4/314 (1%) Query: 1 MMDWTDRHCRVFHRQITRHTWLYTEMVTTGALLHGDVPRHLDFDEQEHPVALQLGGSEPS 60 M+DWTDRHCR FHR I+RHTWLYTEMVTTGALL GDV RHLDF E+EHP+ALQLGGSEP Sbjct: 16 MLDWTDRHCRYFHRLISRHTWLYTEMVTTGALLFGDVARHLDFSEEEHPIALQLGGSEPG 75 Query: 61 DLAHSAKLGEQWGYDEINLNCGCPSERVQKGAFGACLMGEPTLVADCVKAMKDAVSIDVT 120 DLA A+LGE+WGYDEINLNCGCPSERVQKGAFGACLM E TLVA+CVKAM+DAVSIDVT Sbjct: 76 DLAQCARLGEKWGYDEINLNCGCPSERVQKGAFGACLMSESTLVANCVKAMQDAVSIDVT 135 Query: 121 VKHRIGIDDVQSYDFVRDFVGQIAEAGCKTFIVHARNAILKGLSPKENREIPPLKYHYAY 180 VKHRIGID +SYDFVRDF+G++AEAGCKTFIVHARNAILKGLSP+ENREIPPL+Y Y Sbjct: 136 VKHRIGIDKNESYDFVRDFIGEVAEAGCKTFIVHARNAILKGLSPRENREIPPLRYEVVY 195 Query: 181 QLKQDFPELEILINGGIKTLPEIDEHLKHVDGVMLGREAYHNPYLMATFDARYYGDLDGG 240 QLK+DFPELEIL+NGGI+T E+ EH+KHVDGVM+GR AYH PY MA FDAR+Y D Sbjct: 196 QLKKDFPELEILLNGGIETADEVGEHIKHVDGVMIGRAAYHYPYRMAEFDARFYDDPTTA 255 Query: 241 RQPSRAEVIEAMLPYIKRQLELHGDNGRGLRLNSITRHMLGLLTGMPGARAFRQTLSDSK 300 P A+V++AM+PYI++QL L+G +GL+++ ITRHMLGL+TG+PGAR FRQ LSD Sbjct: 256 TTP--ADVVKAMMPYIEKQLSLYGS--KGLKMHGITRHMLGLMTGLPGARRFRQILSDPT 311 Query: 301 RLALGDPALLLEAL 314 +LA G+PA+LLEAL Sbjct: 312 KLASGNPAVLLEAL 325