BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4459.p (185 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776971.1| transcription antiterminator (L factor) tran... 287 5e-76 ref|YP_004754080.1| transcription termination protein NusB [Coll... 244 5e-63 ref|YP_001354028.1| N utilization substance protein B [Janthinob... 236 1e-60 ref|YP_001099345.1| transcription termination, L factor (N utili... 234 4e-60 ref|ZP_08273569.1| Transcription termination protein NusB [Oxalo... 232 2e-59 >ref|YP_003776971.1| transcription antiterminator (L factor) transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65063.1| transcription antiterminator (L factor) transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 156 Score = 287 bits (735), Expect = 5e-76, Method: Composition-based stats. Identities = 152/156 (97%), Positives = 152/156 (97%) Query: 30 MSNKTPHANSNKNRTPRHRAREFALQGLYQWLLNHEDAGAIEAHIREAHGFDKADAEHFD 89 MSNKT HANSNKNRTPRHRAREFALQGLYQWLLNHEDAGAIEAHIREAHGFDKADAEHFD Sbjct: 1 MSNKTQHANSNKNRTPRHRAREFALQGLYQWLLNHEDAGAIEAHIREAHGFDKADAEHFD 60 Query: 90 TLLTGAIRDAEKLRAALEPLIDRPIKELSPVEHAALLIGAYELQNHIEIPYKVVINEAVE 149 TLLTGAIRDAEKLRA L PLIDRPIKELSPVEHAALLIGAYELQNHIEIPYKVVINEAVE Sbjct: 61 TLLTGAIRDAEKLRAGLAPLIDRPIKELSPVEHAALLIGAYELQNHIEIPYKVVINEAVE 120 Query: 150 LTKSFGGIDGHKYVNGVLDRFAAQARATEVEAAGRR 185 LTKSFGGIDGHKYVNGVLDRFAAQ RATEVEAAGRR Sbjct: 121 LTKSFGGIDGHKYVNGVLDRFAAQTRATEVEAAGRR 156 >ref|YP_004754080.1| transcription termination protein NusB [Collimonas fungivorans Ter331] gb|AEK63257.1| Transcription termination protein NusB [Collimonas fungivorans Ter331] Length = 156 Score = 244 bits (622), Expect = 5e-63, Method: Composition-based stats. Identities = 123/155 (79%), Positives = 139/155 (89%) Query: 30 MSNKTPHANSNKNRTPRHRAREFALQGLYQWLLNHEDAGAIEAHIREAHGFDKADAEHFD 89 M+NKT HAN +K+RTPRHRAREFALQGLYQWLLN+ED AI +IR+AHGFDKADAEHF+ Sbjct: 1 MTNKTLHANPSKSRTPRHRAREFALQGLYQWLLNNEDVTAISENIRQAHGFDKADAEHFN 60 Query: 90 TLLTGAIRDAEKLRAALEPLIDRPIKELSPVEHAALLIGAYELQNHIEIPYKVVINEAVE 149 +LL GAI+DA LRA LEPLIDR I ELSPVEHAALLIGA+ELQNH+EIPY+VVINEAVE Sbjct: 61 SLLYGAIKDAVPLRAGLEPLIDRKISELSPVEHAALLIGAFELQNHVEIPYRVVINEAVE 120 Query: 150 LTKSFGGIDGHKYVNGVLDRFAAQARATEVEAAGR 184 LTKSFGGIDGHKYVNGVLD+FAA+ RATE+ A + Sbjct: 121 LTKSFGGIDGHKYVNGVLDKFAAKTRATEIGAGKK 155 >ref|YP_001354028.1| N utilization substance protein B [Janthinobacterium sp. Marseille] gb|ABR88348.1| N utilization substance protein B [Janthinobacterium sp. Marseille] Length = 156 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 120/156 (76%), Positives = 132/156 (84%), Gaps = 1/156 (0%) Query: 30 MSNKTPHANSNKNRTPRHRAREFALQGLYQWLLNHEDAGAIEAHIREAHGFDKADAEHFD 89 M+ KT HAN +KNRTPRHRAREFALQGLYQWLLN+ED IE HIR+AHGFDKADAEHFD Sbjct: 1 MTQKTDHANPSKNRTPRHRAREFALQGLYQWLLNNEDVRVIETHIRQAHGFDKADAEHFD 60 Query: 90 TLLTGAIRDAEKLRAALEPLIDRPIKELSPVEHAALLIGAYELQNHIEIPYKVVINEAVE 149 LL G ++ +LRA L PLIDR I LSPVEHAALLIGA+EL+NHIEIPYKVVINEAVE Sbjct: 61 ALLYGTVKQVGELRAGLAPLIDREISALSPVEHAALLIGAFELKNHIEIPYKVVINEAVE 120 Query: 150 LTKSFGGIDGHKYVNGVLDRFAAQARATEVEAAGRR 185 LTKSFGGIDGHKYVNGVLD+FA AR E+ AGR+ Sbjct: 121 LTKSFGGIDGHKYVNGVLDKFAVSAREVEIN-AGRK 155 >ref|YP_001099345.1| transcription termination, L factor (N utilization substance protein B) [Herminiimonas arsenicoxydans] emb|CAL61218.1| N utilization substance protein B homolog (Protein NusB) [Herminiimonas arsenicoxydans] Length = 156 Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats. Identities = 120/156 (76%), Positives = 133/156 (85%), Gaps = 1/156 (0%) Query: 30 MSNKTPHANSNKNRTPRHRAREFALQGLYQWLLNHEDAGAIEAHIREAHGFDKADAEHFD 89 M+ KT HAN +KNRTPRHRAREFALQGLYQWLLN+ED IE HIR+AHGFDKADAEHFD Sbjct: 1 MTQKTDHANPSKNRTPRHRAREFALQGLYQWLLNNEDVRTIENHIRQAHGFDKADAEHFD 60 Query: 90 TLLTGAIRDAEKLRAALEPLIDRPIKELSPVEHAALLIGAYELQNHIEIPYKVVINEAVE 149 LL G ++ +LRA L PLIDR I LSPVEHAALLIGA+EL+NHIEIPYKVVINEAVE Sbjct: 61 ALLYGTVKQVGELRAGLAPLIDREISALSPVEHAALLIGAFELKNHIEIPYKVVINEAVE 120 Query: 150 LTKSFGGIDGHKYVNGVLDRFAAQARATEVEAAGRR 185 LTKSFGGIDGHKYVNGVLD+FAA R E+ +AGR+ Sbjct: 121 LTKSFGGIDGHKYVNGVLDKFAAGVREPEI-SAGRK 155 >ref|ZP_08273569.1| Transcription termination protein NusB [Oxalobacteraceae bacterium IMCC9480] gb|EGF32966.1| Transcription termination protein NusB [Oxalobacteraceae bacterium IMCC9480] Length = 157 Score = 232 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 114/154 (74%), Positives = 132/154 (85%) Query: 29 IMSNKTPHANSNKNRTPRHRAREFALQGLYQWLLNHEDAGAIEAHIREAHGFDKADAEHF 88 ++ K HAN NK+RTPRHR+REFALQGLYQWLLN+EDAG IEAH+REAHGFDKADA HF Sbjct: 1 MIPKKELHANPNKSRTPRHRSREFALQGLYQWLLNNEDAGVIEAHLREAHGFDKADAVHF 60 Query: 89 DTLLTGAIRDAEKLRAALEPLIDRPIKELSPVEHAALLIGAYELQNHIEIPYKVVINEAV 148 D LL G I+ A+ LR L PLIDRP+ +LSP+EHA LLIGAYEL+NHIEIPYKV+INE+V Sbjct: 61 DALLYGTIKQADALRTDLLPLIDRPLSQLSPIEHAILLIGAYELKNHIEIPYKVIINESV 120 Query: 149 ELTKSFGGIDGHKYVNGVLDRFAAQARATEVEAA 182 EL KSFGGIDGHKYVNGVLD+FAA+ R E+ A+ Sbjct: 121 ELAKSFGGIDGHKYVNGVLDKFAAKTREVEIAAS 154