BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4456.p         (494 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776968.1| 3-polyprenyl-4-hydroxybenzoate decarboxylase...   999   0.0  
ref|YP_001354025.1| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase...   895   0.0  
sp|A4G3Y4|UBID_HERAR RecName: Full=3-octaprenyl-4-hydroxybenzoat...   893   0.0  
ref|YP_004751897.1| 3-polyprenyl-4-hydroxybenzoate carboxy-lyase...   888   0.0  
ref|ZP_08273566.1| 3-polyprenyl-4-hydroxybenzoate carboxy-lyase ...   869   0.0  

>ref|YP_003776968.1| 3-polyprenyl-4-hydroxybenzoate decarboxylase [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ65060.1| 3-polyprenyl-4-hydroxybenzoate decarboxylase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 494

 Score =  999 bits (2584), Expect = 0.0,   Method: Composition-based stats.
 Identities = 478/494 (96%), Positives = 488/494 (98%)

Query: 1   MKYTDLRDFISQLQQKGELKRVSHPVSSHLEMTEIADRTLRAEGPALLFEQVDKKNIPVL 60
           MKYTDLRDFISQLQQKGELKRVSHPVSSHLEMTEI DRTLRAEGPALLFE VD+KNIPVL
Sbjct: 1   MKYTDLRDFISQLQQKGELKRVSHPVSSHLEMTEICDRTLRAEGPALLFEHVDQKNIPVL 60

Query: 61  ANLFGTPHRVALGMGADSISELRRIGHLLARLKEPEPPKGIKDVLDLGGLVKSLWDMAPK 120
           ANLFGTPHRVALGMGAD+I ELRRIGHLLARLKEPEPPKGIKDVLDLG LVKSLWDMAPK
Sbjct: 61  ANLFGTPHRVALGMGADNIGELRRIGHLLARLKEPEPPKGIKDVLDLGSLVKSLWDMAPK 120

Query: 121 ERGSAPCQDVVWEGKEVDLSRLPIQHCWPGDIAPLITWGLVITKGPNKKRQNLGIYRQQV 180
           ERGSAPCQDVVWEGK+VDLSRLPIQHCWPGDIAPLITWGLV+TKGP+KKRQNLGIYRQQV
Sbjct: 121 ERGSAPCQDVVWEGKDVDLSRLPIQHCWPGDIAPLITWGLVVTKGPHKKRQNLGIYRQQV 180

Query: 181 LGPNKVIMRWLAHRGGALDFREHCIANPGKPYPIAVALGADPATILGAVTPVPDSLSEYQ 240
           LGPNKVIMRWLAHRGGALDFREHCIANPGKPYP+ VALGADPATILGAVTPVPD+LSEYQ
Sbjct: 181 LGPNKVIMRWLAHRGGALDFREHCIANPGKPYPVVVALGADPATILGAVTPVPDNLSEYQ 240

Query: 241 FAGLLRGSRTELVKAMGSDLRVPASAEIVLEGHIYPDEKHASGFEHALEGPYGDHTGYYN 300
           FAGLLRGSRTELVKAMGS+LRVPASAEIVLEGHIYPDEKHASGFEHALEGPYGDHTGYYN
Sbjct: 241 FAGLLRGSRTELVKAMGSELRVPASAEIVLEGHIYPDEKHASGFEHALEGPYGDHTGYYN 300

Query: 301 EQDWFPVFTIDRITMRRDAIYHSTYTGKPPDEPAVLGVALNEVFVPLLQKQFAEITDFYL 360
           EQDWFPVFTIDRITMRRDAIYHSTYTGKPPDEPAVLGVALNEVFVPLLQKQFAEITDFYL
Sbjct: 301 EQDWFPVFTIDRITMRRDAIYHSTYTGKPPDEPAVLGVALNEVFVPLLQKQFAEITDFYL 360

Query: 361 PPEGCSYRMAVVQMKKSYAGHAKRVMFGVWSFLRQFMYTKFIVVVDEDVDIRDWKEVIWA 420
           PPEGCSYRMAVVQMKKSYAGHAKRVMFGVWSFLRQFMYTKFIVVVDEDV+IRDWKEVIWA
Sbjct: 361 PPEGCSYRMAVVQMKKSYAGHAKRVMFGVWSFLRQFMYTKFIVVVDEDVNIRDWKEVIWA 420

Query: 421 ITTRVDPVRDTVMVDNTPIDYLDFASPISGLGSKMGIDATNKWPGETSREWGTPIVMSDD 480
           ITTRVDPVRDTVMVDNTPIDYLDFASPISGLGSKMGIDATNKWPGETSREWGTPIVM +D
Sbjct: 421 ITTRVDPVRDTVMVDNTPIDYLDFASPISGLGSKMGIDATNKWPGETSREWGTPIVMDED 480

Query: 481 VKKRVDAIWQDLGI 494
           VKKRVDAIWQDLGI
Sbjct: 481 VKKRVDAIWQDLGI 494


>ref|YP_001354025.1| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Janthinobacterium sp.
           Marseille]
 sp|A6T0H8|UBID_JANMA RecName: Full=3-octaprenyl-4-hydroxybenzoate carboxy-lyase;
           AltName: Full=Polyprenyl p-hydroxybenzoate decarboxylase
 gb|ABR89082.1| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Janthinobacterium sp.
           Marseille]
          Length = 494

 Score =  895 bits (2313), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/494 (86%), Positives = 456/494 (92%)

Query: 1   MKYTDLRDFISQLQQKGELKRVSHPVSSHLEMTEIADRTLRAEGPALLFEQVDKKNIPVL 60
           MKY+DLRDFISQLQQ GELKR++ PVS +LEMTEI DRTLRA GPALLFEQ   + IPVL
Sbjct: 1   MKYSDLRDFISQLQQMGELKRINVPVSPYLEMTEICDRTLRAAGPALLFEQPTGQKIPVL 60

Query: 61  ANLFGTPHRVALGMGADSISELRRIGHLLARLKEPEPPKGIKDVLDLGGLVKSLWDMAPK 120
            NLFGTPHRVALGMGA  +SELR+IGH+LA LKEPEPPKG KD++ LG LVKS+WDMAPK
Sbjct: 61  GNLFGTPHRVALGMGATDVSELRKIGHVLAMLKEPEPPKGFKDIMGLGSLVKSIWDMAPK 120

Query: 121 ERGSAPCQDVVWEGKEVDLSRLPIQHCWPGDIAPLITWGLVITKGPNKKRQNLGIYRQQV 180
           E   APC D+VWEG +VDL+RLPIQHCWPGDIAPLITWGLVITKGP+KKRQNLGIYRQQV
Sbjct: 121 ELRGAPCHDIVWEGNDVDLARLPIQHCWPGDIAPLITWGLVITKGPHKKRQNLGIYRQQV 180

Query: 181 LGPNKVIMRWLAHRGGALDFREHCIANPGKPYPIAVALGADPATILGAVTPVPDSLSEYQ 240
           +G NKVIMRWLA RGGALDFREH I N G+PYPIAVALGADPATILGAVTPVPDSLSEYQ
Sbjct: 181 IGRNKVIMRWLAQRGGALDFREHSIVNRGQPYPIAVALGADPATILGAVTPVPDSLSEYQ 240

Query: 241 FAGLLRGSRTELVKAMGSDLRVPASAEIVLEGHIYPDEKHASGFEHALEGPYGDHTGYYN 300
           FAGLLRGSRTELVKA+GS+LRVPASAEIVLEGHIYPDE H SG+EHALEGPYGDHTGYYN
Sbjct: 241 FAGLLRGSRTELVKALGSELRVPASAEIVLEGHIYPDESHPSGYEHALEGPYGDHTGYYN 300

Query: 301 EQDWFPVFTIDRITMRRDAIYHSTYTGKPPDEPAVLGVALNEVFVPLLQKQFAEITDFYL 360
           EQD FPVFTIDRITMRRD IYHSTYTGKPPDEPAVLGVALNEVF+PLLQKQF+EI DFYL
Sbjct: 301 EQDSFPVFTIDRITMRRDPIYHSTYTGKPPDEPAVLGVALNEVFIPLLQKQFSEILDFYL 360

Query: 361 PPEGCSYRMAVVQMKKSYAGHAKRVMFGVWSFLRQFMYTKFIVVVDEDVDIRDWKEVIWA 420
           PPEGCSYRMAVVQMKK+Y GHAKRVMFGVWSFLRQFMYTKFIVVVDEDV+IRDWKEVIWA
Sbjct: 361 PPEGCSYRMAVVQMKKAYPGHAKRVMFGVWSFLRQFMYTKFIVVVDEDVNIRDWKEVIWA 420

Query: 421 ITTRVDPVRDTVMVDNTPIDYLDFASPISGLGSKMGIDATNKWPGETSREWGTPIVMSDD 480
           ITTRVDP+RDT +VDNTPIDYLDFASP+SGLGSKMGIDATNKWPGET REWG  I M+D+
Sbjct: 421 ITTRVDPIRDTTLVDNTPIDYLDFASPVSGLGSKMGIDATNKWPGETDREWGRTITMTDE 480

Query: 481 VKKRVDAIWQDLGI 494
           VKKRVD IWQ+LGI
Sbjct: 481 VKKRVDQIWQELGI 494


>sp|A4G3Y4|UBID_HERAR RecName: Full=3-octaprenyl-4-hydroxybenzoate carboxy-lyase;
           AltName: Full=Polyprenyl p-hydroxybenzoate decarboxylase
 emb|CAL61221.2| 3-octaprenyl-4-hydroxybenzoate decarboxylase (Polyprenyl
           p-hydroxybenzoate decarboxylase) [Herminiimonas
           arsenicoxydans]
          Length = 494

 Score =  893 bits (2308), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/494 (86%), Positives = 454/494 (91%)

Query: 1   MKYTDLRDFISQLQQKGELKRVSHPVSSHLEMTEIADRTLRAEGPALLFEQVDKKNIPVL 60
           MKY+DLRDFISQLQQ GELKR++ PVS +LEMTEI DRTLRAEGPALLFE      IPVL
Sbjct: 1   MKYSDLRDFISQLQQMGELKRINMPVSPYLEMTEICDRTLRAEGPALLFENPTGHTIPVL 60

Query: 61  ANLFGTPHRVALGMGADSISELRRIGHLLARLKEPEPPKGIKDVLDLGGLVKSLWDMAPK 120
            NLFGTP RVALGMGA  +SELR+IGH+LA LKEPEPPKG KD+L LG LVKSLWDM PK
Sbjct: 61  GNLFGTPQRVALGMGATDVSELRKIGHVLAMLKEPEPPKGFKDMLGLGSLVKSLWDMTPK 120

Query: 121 ERGSAPCQDVVWEGKEVDLSRLPIQHCWPGDIAPLITWGLVITKGPNKKRQNLGIYRQQV 180
           ER  APC D+VWEG +VDL+RLPIQHCWPGDIAPLITWGLVITKGP+KKRQNLGIYRQQV
Sbjct: 121 ERRDAPCHDIVWEGNDVDLARLPIQHCWPGDIAPLITWGLVITKGPHKKRQNLGIYRQQV 180

Query: 181 LGPNKVIMRWLAHRGGALDFREHCIANPGKPYPIAVALGADPATILGAVTPVPDSLSEYQ 240
           +G NKVIMRWLA RGGALDFREH IAN G+PYPIAVALGADPATILGAVTPVPDSLSEYQ
Sbjct: 181 IGRNKVIMRWLAQRGGALDFREHSIANRGQPYPIAVALGADPATILGAVTPVPDSLSEYQ 240

Query: 241 FAGLLRGSRTELVKAMGSDLRVPASAEIVLEGHIYPDEKHASGFEHALEGPYGDHTGYYN 300
           FAGLLRGSRTELVKA+GS+LRVPASAEIVLEGHIYPDE H SG+EHALEGPYGDHTGYYN
Sbjct: 241 FAGLLRGSRTELVKAIGSELRVPASAEIVLEGHIYPDESHPSGYEHALEGPYGDHTGYYN 300

Query: 301 EQDWFPVFTIDRITMRRDAIYHSTYTGKPPDEPAVLGVALNEVFVPLLQKQFAEITDFYL 360
           EQD FPVFTIDRITMRRD IYHSTYTGKPPDEPA+LGVALNEVF+PLLQKQF+EI DFYL
Sbjct: 301 EQDTFPVFTIDRITMRRDPIYHSTYTGKPPDEPAILGVALNEVFIPLLQKQFSEILDFYL 360

Query: 361 PPEGCSYRMAVVQMKKSYAGHAKRVMFGVWSFLRQFMYTKFIVVVDEDVDIRDWKEVIWA 420
           PPEGCSYRMAVVQMKK+Y GHAKRVMFGVWSFLRQFMYTKFI+VVDEDV+IRDWKEVIWA
Sbjct: 361 PPEGCSYRMAVVQMKKAYPGHAKRVMFGVWSFLRQFMYTKFIIVVDEDVNIRDWKEVIWA 420

Query: 421 ITTRVDPVRDTVMVDNTPIDYLDFASPISGLGSKMGIDATNKWPGETSREWGTPIVMSDD 480
           ITTRVDP RDT +VDNTPIDYLDFASP+SGLGSKMGIDATNKWPGET REWGT I M+ +
Sbjct: 421 ITTRVDPTRDTTLVDNTPIDYLDFASPVSGLGSKMGIDATNKWPGETDREWGTTITMTPE 480

Query: 481 VKKRVDAIWQDLGI 494
           VKKRVD IWQ+LGI
Sbjct: 481 VKKRVDQIWQELGI 494


>ref|YP_004751897.1| 3-polyprenyl-4-hydroxybenzoate carboxy-lyase [Collimonas
           fungivorans Ter331]
 gb|AEK61074.1| 3-polyprenyl-4-hydroxybenzoate carboxy-lyase [Collimonas
           fungivorans Ter331]
          Length = 494

 Score =  888 bits (2294), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/494 (85%), Positives = 454/494 (91%)

Query: 1   MKYTDLRDFISQLQQKGELKRVSHPVSSHLEMTEIADRTLRAEGPALLFEQVDKKNIPVL 60
           MKY+DLRDFI +L+Q GELKR+S P+S +LEMTEI DRTLRA GPALLFE     +IPVL
Sbjct: 1   MKYSDLRDFIVKLEQIGELKRISTPISPYLEMTEICDRTLRAAGPALLFENPVGHSIPVL 60

Query: 61  ANLFGTPHRVALGMGADSISELRRIGHLLARLKEPEPPKGIKDVLDLGGLVKSLWDMAPK 120
            NLFGTP RVALGMGAD +SELRRIGH+LA LKEPEPPKG KD+L LG LVKSLWDMAPK
Sbjct: 61  GNLFGTPRRVALGMGADDVSELRRIGHVLAMLKEPEPPKGFKDILGLGTLVKSLWDMAPK 120

Query: 121 ERGSAPCQDVVWEGKEVDLSRLPIQHCWPGDIAPLITWGLVITKGPNKKRQNLGIYRQQV 180
           E  SAPCQD+VWEG +VDL+RLPIQHCWPGD+APLITWGLVITKGP+KKRQNLGIYRQQV
Sbjct: 121 EHRSAPCQDIVWEGNDVDLARLPIQHCWPGDVAPLITWGLVITKGPHKKRQNLGIYRQQV 180

Query: 181 LGPNKVIMRWLAHRGGALDFREHCIANPGKPYPIAVALGADPATILGAVTPVPDSLSEYQ 240
           LG NKVIMRWLAHRGGALDFREH IA  GKPYP+AVALGADPATILGAVTPVPDSLSEYQ
Sbjct: 181 LGRNKVIMRWLAHRGGALDFREHAIATGGKPYPVAVALGADPATILGAVTPVPDSLSEYQ 240

Query: 241 FAGLLRGSRTELVKAMGSDLRVPASAEIVLEGHIYPDEKHASGFEHALEGPYGDHTGYYN 300
           FAGLLRGSRTELVKA+GS+LRVPASAEIVLEGHI PD  H SG+E ALEGPYGDHTGYYN
Sbjct: 241 FAGLLRGSRTELVKAIGSELRVPASAEIVLEGHINPDPSHPSGYEMALEGPYGDHTGYYN 300

Query: 301 EQDWFPVFTIDRITMRRDAIYHSTYTGKPPDEPAVLGVALNEVFVPLLQKQFAEITDFYL 360
           EQDWFPVFTIDRITMR+  IYHSTYTGKPPDEPAVLGVALNEVF+PLLQKQF+EI DFYL
Sbjct: 301 EQDWFPVFTIDRITMRKSPIYHSTYTGKPPDEPAVLGVALNEVFIPLLQKQFSEIIDFYL 360

Query: 361 PPEGCSYRMAVVQMKKSYAGHAKRVMFGVWSFLRQFMYTKFIVVVDEDVDIRDWKEVIWA 420
           PPEGCSYRMAVVQMKK+YAGHAKRVMFGVWSFLRQFMYTKFIVVVDEDV+IRDW EVIWA
Sbjct: 361 PPEGCSYRMAVVQMKKAYAGHAKRVMFGVWSFLRQFMYTKFIVVVDEDVNIRDWNEVIWA 420

Query: 421 ITTRVDPVRDTVMVDNTPIDYLDFASPISGLGSKMGIDATNKWPGETSREWGTPIVMSDD 480
           ITTRVDP+RDT +VDNTPIDYLDFASP+SGLGSKMGIDATNKWPGETSREWG  I MSD+
Sbjct: 421 ITTRVDPIRDTTIVDNTPIDYLDFASPVSGLGSKMGIDATNKWPGETSREWGRTISMSDE 480

Query: 481 VKKRVDAIWQDLGI 494
           VK RVD IWQ+LG+
Sbjct: 481 VKTRVDQIWQELGL 494


>ref|ZP_08273566.1| 3-polyprenyl-4-hydroxybenzoate carboxy-lyase [Oxalobacteraceae
           bacterium IMCC9480]
 gb|EGF32963.1| 3-polyprenyl-4-hydroxybenzoate carboxy-lyase [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 517

 Score =  869 bits (2246), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/494 (83%), Positives = 445/494 (90%)

Query: 1   MKYTDLRDFISQLQQKGELKRVSHPVSSHLEMTEIADRTLRAEGPALLFEQVDKKNIPVL 60
           MKY+DLRDFI QL+  GELKRV+ PVSS+LE+TEI DRTLRA GPALLFE VD ++IPVL
Sbjct: 24  MKYSDLRDFIVQLESIGELKRVTFPVSSYLEITEICDRTLRAGGPALLFENVDGQSIPVL 83

Query: 61  ANLFGTPHRVALGMGADSISELRRIGHLLARLKEPEPPKGIKDVLDLGGLVKSLWDMAPK 120
            NLFGTP RVALGMGA  +SELR+IGH+LA LKEPEPPKG KD+L L  LVKSLWDMAPK
Sbjct: 84  GNLFGTPRRVALGMGAQEVSELRKIGHVLAMLKEPEPPKGFKDLLGLTSLVKSLWDMAPK 143

Query: 121 ERGSAPCQDVVWEGKEVDLSRLPIQHCWPGDIAPLITWGLVITKGPNKKRQNLGIYRQQV 180
           E  SA CQDVV EG  VDL +LPIQHCWPGD+APLITWGLVITKGP+KKRQNLGIYRQQV
Sbjct: 144 ELRSAACQDVVLEGDAVDLGKLPIQHCWPGDVAPLITWGLVITKGPHKKRQNLGIYRQQV 203

Query: 181 LGPNKVIMRWLAHRGGALDFREHCIANPGKPYPIAVALGADPATILGAVTPVPDSLSEYQ 240
           L  NKVIMRWLA RGGALDFREH   N G+PYPI VALGADPATILGAVTPVPDSLSEYQ
Sbjct: 204 LSRNKVIMRWLAQRGGALDFREHAKVNKGQPYPICVALGADPATILGAVTPVPDSLSEYQ 263

Query: 241 FAGLLRGSRTELVKAMGSDLRVPASAEIVLEGHIYPDEKHASGFEHALEGPYGDHTGYYN 300
           FAGLLRGSRTELVKA+GS+LRVPA+AEIVLEGHIY D  H SG+EHALEGPYGDHTGYYN
Sbjct: 264 FAGLLRGSRTELVKAIGSELRVPATAEIVLEGHIYADPNHPSGYEHALEGPYGDHTGYYN 323

Query: 301 EQDWFPVFTIDRITMRRDAIYHSTYTGKPPDEPAVLGVALNEVFVPLLQKQFAEITDFYL 360
           EQD FPV TIDRITMRR+ IYHSTYTGKPPDEPA+LGVALNEVF+PLLQKQF EITDFYL
Sbjct: 324 EQDMFPVLTIDRITMRRNPIYHSTYTGKPPDEPAILGVALNEVFIPLLQKQFTEITDFYL 383

Query: 361 PPEGCSYRMAVVQMKKSYAGHAKRVMFGVWSFLRQFMYTKFIVVVDEDVDIRDWKEVIWA 420
           PPEGCSYRMA+VQMKKSY GHAKRVMFGVWSFLRQFMYTKFI+VVDEDVDIRDWKEVIWA
Sbjct: 384 PPEGCSYRMAIVQMKKSYPGHAKRVMFGVWSFLRQFMYTKFIIVVDEDVDIRDWKEVIWA 443

Query: 421 ITTRVDPVRDTVMVDNTPIDYLDFASPISGLGSKMGIDATNKWPGETSREWGTPIVMSDD 480
           ITTRVDP+RDT +VDNTPIDYLDFASP+SGLGSKMGIDATNKW GET REWG+ I MSD+
Sbjct: 444 ITTRVDPLRDTTLVDNTPIDYLDFASPVSGLGSKMGIDATNKWAGETDREWGSTISMSDE 503

Query: 481 VKKRVDAIWQDLGI 494
           VK R+D+IW  LGI
Sbjct: 504 VKTRIDSIWGQLGI 517