BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4453.p (603 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776966.1| TPR repeat-containing protein [Herbaspirillu... 936 0.0 ref|ZP_03269010.1| TPR repeat-containing protein [Burkholderia s... 392 e-107 ref|YP_001895065.1| hypothetical protein Bphyt_1426 [Burkholderi... 388 e-105 ref|YP_003604650.1| hypothetical protein [Burkholderia sp. CCGE1... 386 e-105 ref|ZP_06842166.1| TPR repeat-containing protein [Burkholderia s... 385 e-104 >ref|YP_003776966.1| TPR repeat-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ65058.1| TPR repeat-containing protein [Herbaspirillum seropedicae SmR1] Length = 603 Score = 936 bits (2418), Expect = 0.0, Method: Composition-based stats. Identities = 471/603 (78%), Positives = 523/603 (86%) Query: 1 MHQQANASLILLQKALALHQKGDLAPAEELYKKVLVKLPDHFEANYLYGMLKLHQEDWEA 60 M QQANA+ ILLQKALALHQKG LAPAEELYKKVLVKLP HFEANYLYGMLKLHQEDWE Sbjct: 1 MRQQANANQILLQKALALHQKGQLAPAEELYKKVLVKLPRHFEANYLYGMLKLHQEDWET 60 Query: 61 AEAQLAHAIELNPDHRDTYFDHAGALVHLGRDAEAVQRYDEILAQTPDFADALMARGAAL 120 AEAQLA AIELNPDH DTYFDHAGAL HLGRD EAV RYD +L DF +AL+ARGAAL Sbjct: 61 AEAQLAKAIELNPDHLDTYFDHAGALAHLGRDDEAVARYDLVLTVNADFVEALLARGAAL 120 Query: 121 RRLKRNREALADIERAAALTPDNPDAWFQLGNLQHEFYGYRDARASYERAVALRPDFIEA 180 RRL RNREALAD+ERA AL PDN DAWFQ GN+ H+ Y Y DAR SYERAVALRPDFIEA Sbjct: 121 RRLGRNREALADLERATALAPDNADAWFQRGNVLHDSYAYGDARESYERAVALRPDFIEA 180 Query: 181 WFNLGNTCKDSYQFDEALRAYDHALEVQPDFFEAQSNRGFVLFKMQRPMEALEAYDRAMA 240 WFNLGNTCKD Q D+ALRAYD ALEVQPDFFEA SNRG+VLFKMQRP EAL+AYDRA+A Sbjct: 181 WFNLGNTCKDGNQLDQALRAYDRALEVQPDFFEAISNRGYVLFKMQRPAEALQAYDRALA 240 Query: 241 LDDSSPDLWFNRGSTLEQLYRFSEATECYRRARELKPDASSAAWNDALLKLRQGDYANGW 300 LD+ +PDLWFNRGSTLEQLYRF EA+E YRRA+ LKPDA SA WN+AL++LRQGD+ NGW Sbjct: 241 LDERAPDLWFNRGSTLEQLYRFEEASESYRRAKALKPDAGSATWNEALMQLRQGDFVNGW 300 Query: 301 PAYESRWATEQMRTQVRQFLQPLWLGQQSLQDKTILIHAEQGFGDTLQFVRYLPQVAALG 360 +E+RWATEQMR Q RQF+QPLWLG+Q L+ KTIL+HAEQGFGDTLQFVRY P +AA G Sbjct: 301 KGFETRWATEQMRGQQRQFMQPLWLGEQPLEGKTILLHAEQGFGDTLQFVRYAPLLAARG 360 Query: 361 ARVILEVPPALVRLLAKVPGAAQVISSDQFMRPGFDYHCPLMSLPLACKSFSEADIPRAP 420 ARVILEV PAL R LA +PG QVI +D FMRP FD+HCPLMSLPLACK+FSEADIPRAP Sbjct: 361 ARVILEVQPALTRQLAGLPGVTQVIGTDHFMRPPFDFHCPLMSLPLACKTFSEADIPRAP 420 Query: 421 YLLPDADAWAAWLQRLPRNRSLRVGLVWAGSSAQTHPEAVRIDEQRSLPFAALAPVVELA 480 YLLP+A +WAAW QRLPRNR+LRVGLVWAGSSAQTHP+AVRID +RSLPFA LAP+VELA Sbjct: 421 YLLPEASSWAAWHQRLPRNRALRVGLVWAGSSAQTHPDAVRIDGERSLPFATLAPLVELA 480 Query: 481 REHSRLEFYSVQMGEAAVAQLRAHPLSAHVRDCSPELHDFADTSGLIANLDLLISVDTSA 540 REH+ LEFYS+Q+G+ AVAQL AHPL++ VRDCSPELHDFA+T L+ANLDLLI+VDTS Sbjct: 481 REHAALEFYSLQVGQDAVAQLHAHPLASLVRDCSPELHDFAETGALLANLDLLITVDTSV 540 Query: 541 CHLAGALGKPVWLLNRANTCWRWQLERSDTPWYPGMHLFRQKQTGDWSEVVAEVRSALLQ 600 CHLAGALG+PVWLLNR N CWRWQ+ER D+PWY GM +F Q+ G W EV+A VR+AL Q Sbjct: 541 CHLAGALGRPVWLLNRHNGCWRWQVEREDSPWYGGMTIFGQRTAGQWDEVIARVRAALQQ 600 Query: 601 QLA 603 QLA Sbjct: 601 QLA 603 >ref|ZP_03269010.1| TPR repeat-containing protein [Burkholderia sp. H160] gb|EDZ99402.1| TPR repeat-containing protein [Burkholderia sp. H160] Length = 579 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 260/599 (43%), Positives = 333/599 (55%), Gaps = 52/599 (8%) Query: 11 LLQKALALHQKGDLAPAEELYKKVLVKLPDHFEANYLYGMLKLHQEDWEAAEAQLAHAIE 70 LL++A+AL Q G L AEELY+++L P H +A G L L + L + Sbjct: 14 LLRQAVALQQHGALVEAEELYREILELKPKHVDALRWLGELALQTGRLQEGAELLKKTLA 73 Query: 71 LNPDHRDTYFDHAGALVHLGRDAEAVQRYDEILAQTPDFADALMARGAALRRLKRNREAL 130 LNP + + A AL A+QR+DE AL Sbjct: 74 LNPKQPAVHSNLAYAL-------NALQRHDE---------------------------AL 99 Query: 131 ADIERAAALTPDNPDAWFQLGNLQHEFYGYRDARASYERAVALRPDFIEAWFNLGNTCKD 190 A ERA A+ P DA GN DA ASYERA++L P+F AW N +D Sbjct: 100 ACAERALAMQPKFADALNNRGNALAALNRLPDALASYERALSLAPEFAAAWNNRACVLRD 159 Query: 191 SYQFDEALRAYDHALEVQPDFFEAQSNRGFVLFKMQRPMEALEAYDRAMALDDSSPDLWF 250 + +AL + D+AL +QP++ +A SNRG VL + +P EA Y RA+ L + D W Sbjct: 160 LGRHADALDSCDNALVLQPNYPDAWSNRGNVLGDLNQPHEAQRCYQRALELAPAFVDAWN 219 Query: 251 NRGSTLEQLYRFSEATECYRRARELKPDASSAAWNDALLKLRQGDYANGWPAYESRWATE 310 N G L + +A Y RA L P ++ A WN AL L+ G + GW YE RW Sbjct: 220 NLGLAQVDLNQREQALSSYERALALNPASAEAHWNQALCLLQMGRFDTGWREYEWRWERS 279 Query: 311 QMRTQVRQFLQPLWLGQQSLQDKTILIHAEQGFGDTLQFVRYLPQVAALGARVILEVPPA 370 +++ R F +P WLG L KTIL+HAEQG GDTLQF RY VA LGA+V+LEVP A Sbjct: 280 RIKAGKRAFGEPRWLGDFPLDGKTILLHAEQGLGDTLQFCRYASLVAGLGAKVVLEVPGA 339 Query: 371 LVRLLAKVPGAAQVISSDQFMRPGFDYHCPLMSLPLACKSFSEADIPRA-PYLLPDADAW 429 L+RLL+ + G ++I + Q + P FD HCPL+SLPLA S +EA IP A PYL A Sbjct: 340 LLRLLSTLEGVDRLIEAGQPLPP-FDCHCPLLSLPLAF-STNEASIPAATPYLFAQPAAV 397 Query: 430 AAWLQRLPRN----------RSLRVGLVWAGSSAQTHPEAVRIDEQRSLPFAALAPVVEL 479 + W +R+ R+ R L+VGLVWAG + E +ID +RSL F LAP++++ Sbjct: 398 SEWRERIERDANTHANGSAIRPLKVGLVWAGENRAHVAELRKIDARRSLAFEQLAPLLDV 457 Query: 480 AREHSRLEFYSVQMGEAAVAQLRAHPLSAHVRDCSPELHDFADTSGLIANLDLLISVDTS 539 + F+SVQ G AA QL V D + LHDFADT+ LIA+LDL+ISVDTS Sbjct: 458 ----PNVCFFSVQKG-AAAPQLAESAHRERVADYTDLLHDFADTAALIASLDLVISVDTS 512 Query: 540 ACHLAGALGKPVWLLNRANTCWRWQLERSDTPWYPGMHLFRQKQTGDWSEVVAEVRSAL 598 HLAGAL KPVW+LNR +TCWRW LERSDTPWYP LFRQ GDW V+ VR AL Sbjct: 513 TAHLAGALDKPVWILNRFDTCWRWLLERSDTPWYPSARLFRQPALGDWDSVIGTVRDAL 571 >ref|YP_001895065.1| hypothetical protein Bphyt_1426 [Burkholderia phytofirmans PsJN] gb|ACD15841.1| TPR repeat-containing protein [Burkholderia phytofirmans PsJN] Length = 574 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 248/590 (42%), Positives = 327/590 (55%), Gaps = 42/590 (7%) Query: 11 LLQKALALHQKGDLAPAEELYKKVLVKLPDHFEANYLYGMLKLHQEDWEAAEAQLAHAIE 70 +L++A+AL Q G A AEEL++++L E Sbjct: 14 MLRQAVALQQNGAFAEAEELFREIL----------------------------------E 39 Query: 71 LNPDHRDTYFDHAGALVHLGRDAEAVQRYDEILAQTPDFADALMARGAALRRLKRNREAL 130 L P H D + GR E V+ + LA A AL L+R EAL Sbjct: 40 LKPRHFDALQLLGALALQAGRLQEGVELLGKALAINAKQAPLHSNLAYALNVLQRFDEAL 99 Query: 131 ADIERAAALTPDNPDAWFQLGNLQHEFYGYRDARASYERAVALRPDFIEAWFNLGNTCKD 190 A +RA AL P PDA GN Q DA S++RA+AL PDF +AW N +D Sbjct: 100 ASADRALALQPKFPDALNNRGNAQAGLNRPLDALGSFDRAIALNPDFAQAWNNRACVLRD 159 Query: 191 SYQFDEALRAYDHALEVQPDFFEAQSNRGFVLFKMQRPMEALEAYDRAMALDDSSPDLWF 250 + +AL + DHAL +QP + +A SNRG + +P EA Y RA+ L + D W Sbjct: 160 LGRPADALASCDHALALQPGYPDAWSNRGNAFSDLNQPEEAERCYRRALELAPAFADAWN 219 Query: 251 NRGSTLEQLYRFSEATECYRRARELKPDASSAAWNDALLKLRQGDYANGWPAYESRWATE 310 N G T L + ++A Y RA + DA+ WN++L L+ GW YE RW Sbjct: 220 NLGLTQIDLNQHAQALVSYERALAVNSDAAETHWNESLCLLQMRQLEAGWQKYEWRWERS 279 Query: 311 QMRTQVRQFLQPLWLGQQSLQDKTILIHAEQGFGDTLQFVRYLPQVAALGARVILEVPPA 370 +++ R F +PLWLG S+ KTIL+HAEQG GDTLQF RY V+ LGA+V+LEVP Sbjct: 280 RIKASRRSFAEPLWLGDFSIDGKTILLHAEQGLGDTLQFCRYAALVSKLGAKVVLEVPRE 339 Query: 371 LVRLLAKVPGAAQVISSDQFMRPGFDYHCPLMSLPLACKSFSEADIPRAPYLLPDADAWA 430 L+RL+A + G Q+I + Q + P FD HCPL+SLPLA K+ ++ PYL DA+A Sbjct: 340 LMRLMATLDGVDQLIEAGQTL-PSFDCHCPLLSLPLAFKTGLDSIPSNTPYLCADAEAAR 398 Query: 431 AWLQRL--PRNRSLRVGLVWAGSSAQTHPEAVRIDEQRSLPFAALAPVVELAREHSRLEF 488 W +RL P + L+VGLVWAG + E + D +RS+ FA LAP++++ + F Sbjct: 399 QWRERLHAPADARLKVGLVWAGGNRPHVAELRKNDARRSIAFARLAPLLDV----PNVRF 454 Query: 489 YSVQMGEAAVAQLRAHPLSAHVRDCSPELHDFADTSGLIANLDLLISVDTSACHLAGALG 548 +S+Q G AA QL + V D + EL DFADT+ L+ANLDL+ISVDTS HLAGAL Sbjct: 455 FSLQKGPAA-QQLESDERGGRVIDYTGELDDFADTAALVANLDLVISVDTSTAHLAGALD 513 Query: 549 KPVWLLNRANTCWRWQLERSDTPWYPGMHLFRQKQTGDWSEVVAEVRSAL 598 KPVW+LNR +TCWRW LER+DTPWYP LFRQ GDW V+ R AL Sbjct: 514 KPVWILNRFDTCWRWMLERTDTPWYPRARLFRQPALGDWDSVMMAARDAL 563 >ref|YP_003604650.1| hypothetical protein [Burkholderia sp. CCGE1002] gb|ADG15139.1| TPR repeat-containing protein [Burkholderia sp. CCGE1002] Length = 579 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 255/599 (42%), Positives = 329/599 (54%), Gaps = 52/599 (8%) Query: 11 LLQKALALHQKGDLAPAEELYKKVLVKLPDHFEANYLYGMLKLHQEDWEAAEAQLAHAIE 70 LL++A+AL Q G L AEE+Y+++L P H +A G L L + L A+ Sbjct: 14 LLRQAVALQQNGALVEAEEMYREILELKPKHGDALRWLGELALQTGRLQEGVELLKKALA 73 Query: 71 LNPDHRDTYFDHAGALVHLGRDAEAVQRYDEILAQTPDFADALMARGAALRRLKRNREAL 130 LN + + A AL A+QR+DE AL Sbjct: 74 LNARQPAVHSNLAYAL-------NALQRHDE---------------------------AL 99 Query: 131 ADIERAAALTPDNPDAWFQLGNLQHEFYGYRDARASYERAVALRPDFIEAWFNLGNTCKD 190 A ERA + P DA GN + +A ASYERA++L P+F AW N +D Sbjct: 100 ACAERALVMQPKFADALNNRGNALASLHRPLEALASYERALSLVPEFAPAWNNRACVLRD 159 Query: 191 SYQFDEALRAYDHALEVQPDFFEAQSNRGFVLFKMQRPMEALEAYDRAMALDDSSPDLWF 250 ++ +AL + D AL +QPD+ +A SNRG VL + +P EA Y RA+ L D W Sbjct: 160 LGRYADALDSCDQALALQPDYADAWSNRGNVLGDLNQPHEAQRCYQRALELAPGFVDAWN 219 Query: 251 NRGSTLEQLYRFSEATECYRRARELKPDASSAAWNDALLKLRQGDYANGWPAYESRWATE 310 N G L + +A Y+RA L P + WN AL L+ G + +GW YE RW Sbjct: 220 NLGLAQIDLNQREQALSSYQRALALNPASVETHWNQALCLLQMGRFESGWREYEWRWERS 279 Query: 311 QMRTQVRQFLQPLWLGQQSLQDKTILIHAEQGFGDTLQFVRYLPQVAALGARVILEVPPA 370 +++ R F QPLWLG L KTIL+HAEQG GDTLQF RY P VA LGA+V+LEVP Sbjct: 280 RIKAGRRAFAQPLWLGDFPLDGKTILLHAEQGLGDTLQFCRYAPLVAKLGAKVVLEVPGP 339 Query: 371 LVRLLAKVPGAAQVISSDQFMRPGFDYHCPLMSLPLACKSFSEADIPRA-PYLLPDADAW 429 L+RLL+ + G Q+I + Q + P FD HCPL+SLP A S EA IP A PYL A Sbjct: 340 LMRLLSTLDGVDQLIEAGQPLPP-FDCHCPLLSLPRAF-STDEASIPAATPYLFAQPAAA 397 Query: 430 AAWLQRLPRN----------RSLRVGLVWAGSSAQTHPEAVRIDEQRSLPFAALAPVVEL 479 + W +R+ N + L+VGLVWAG + E +ID +RSL F LAP++++ Sbjct: 398 SEWRERIESNGNTNADGNAIQPLKVGLVWAGENRAHVAELRKIDARRSLAFEQLAPLLDV 457 Query: 480 AREHSRLEFYSVQMGEAAVAQLRAHPLSAHVRDCSPELHDFADTSGLIANLDLLISVDTS 539 + F+SVQ G A + + V D + LHDFADT+ L+A LDL+ISVDTS Sbjct: 458 ----PNVRFFSVQKGAAGAQLAASA-YAERVADYTELLHDFADTAALVAGLDLVISVDTS 512 Query: 540 ACHLAGALGKPVWLLNRANTCWRWQLERSDTPWYPGMHLFRQKQTGDWSEVVAEVRSAL 598 HLAGALGKPVW+LNR +TCWRW LERSDTPWYP LFRQ Q G W V+ VR AL Sbjct: 513 TAHLAGALGKPVWILNRFDTCWRWLLERSDTPWYPSARLFRQPQLGAWDSVIDAVRGAL 571 >ref|ZP_06842166.1| TPR repeat-containing protein [Burkholderia sp. Ch1-1] gb|EFG70118.1| TPR repeat-containing protein [Burkholderia sp. Ch1-1] Length = 600 Score = 385 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 243/587 (41%), Positives = 325/587 (55%), Gaps = 42/587 (7%) Query: 11 LLQKALALHQKGDLAPAEELYKKVLVKLPDHFEANYLYGMLKLHQEDWEAAEAQLAHAIE 70 +L++A+ L Q G A AEELY+++L E Sbjct: 37 MLRQAVGLQQNGAFAEAEELYREIL----------------------------------E 62 Query: 71 LNPDHRDTYFDHAGALVHLGRDAEAVQRYDEILAQTPDFADALMARGAALRRLKRNREAL 130 L P H D + GR E V+ + LA A AL L+R EAL Sbjct: 63 LKPRHFDALQLLGALALQAGRLQEGVELLRKALAVNAKQAPIHSNLAYALNALQRFDEAL 122 Query: 131 ADIERAAALTPDNPDAWFQLGNLQHEFYGYRDARASYERAVALRPDFIEAWFNLGNTCKD 190 A ERA AL P PDA GN Q DA AS++RA+AL PDF +AW N +D Sbjct: 123 ASAERALALQPKFPDALNNRGNAQAGLNRPLDALASFDRAIALTPDFAQAWNNRACVLRD 182 Query: 191 SYQFDEALRAYDHALEVQPDFFEAQSNRGFVLFKMQRPMEALEAYDRAMALDDSSPDLWF 250 + +AL + DHAL +Q D+ +A SNRG + +P EA +Y RA+ L + D W Sbjct: 183 LGRPADALASCDHALALQRDYPDAWSNRGNAFSDLNQPEEAERSYRRALELAPAFADAWN 242 Query: 251 NRGSTLEQLYRFSEATECYRRARELKPDASSAAWNDALLKLRQGDYANGWPAYESRWATE 310 N G L + ++A Y RA P A+ WN++L L+ G GW YE RW Sbjct: 243 NLGLAQIDLNQHAQALSSYERALAANPSAAETHWNESLCLLQTGQLEAGWRKYEWRWERS 302 Query: 311 QMRTQVRQFLQPLWLGQQSLQDKTILIHAEQGFGDTLQFVRYLPQVAALGARVILEVPPA 370 +++ R F QPLWLG S+ KTIL+HAEQG GDTLQF RY V+ LGA+V+LEVPP Sbjct: 303 RLKASRRVFAQPLWLGDFSIDGKTILLHAEQGLGDTLQFCRYAALVSKLGAKVVLEVPPE 362 Query: 371 LVRLLAKVPGAAQVISSDQFMRPGFDYHCPLMSLPLACKSFSEADIPRAPYLLPDADAWA 430 L+RL++ + G Q+I + + + P FD HCPL+SLPLA K+ ++ PYL A+A Sbjct: 363 LMRLMSTLDGVDQLIEAGEAL-PSFDCHCPLLSLPLAFKTDLDSIPSATPYLYAHAEAAR 421 Query: 431 AWLQRL--PRNRSLRVGLVWAGSSAQTHPEAVRIDEQRSLPFAALAPVVELAREHSRLEF 488 W R+ + L+VGLVWAG + E + D +RS+ F LAP++++ ++F Sbjct: 422 QWRDRIHAQADTRLKVGLVWAGGNRPHVAELRKNDARRSIAFEQLAPILDV----PNVQF 477 Query: 489 YSVQMGEAAVAQLRAHPLSAHVRDCSPELHDFADTSGLIANLDLLISVDTSACHLAGALG 548 +S+Q G AA QL++ + D + EL DFADT+ L+ANLDL+ISVDTS HLAGAL Sbjct: 478 FSLQKGPAA-QQLKSGEWGGRIVDYTEELDDFADTAALVANLDLVISVDTSTAHLAGALD 536 Query: 549 KPVWLLNRANTCWRWQLERSDTPWYPGMHLFRQKQTGDWSEVVAEVR 595 +PVW+LNR +TCWRW LER+DTPWYPG LFRQ GDW V+ R Sbjct: 537 RPVWILNRFDTCWRWMLERTDTPWYPGARLFRQPALGDWDSVMQAAR 583