BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4451.p (493 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776964.1| ATP-dependent RNA helicase [Herbaspirillum s... 807 0.0 ref|YP_004751691.1| ATP-dependent RNA helicase [Collimonas fungi... 688 0.0 ref|YP_001352218.1| ATP-dependent RNA helicase [Janthinobacteriu... 675 0.0 ref|YP_001098795.1| ATP-dependent RNA helicase [Herminiimonas ar... 655 0.0 ref|ZP_08274385.1| ATP-dependent RNA helicase [Oxalobacteraceae ... 649 0.0 >ref|YP_003776964.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1] gb|ADJ65056.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae SmR1] Length = 487 Score = 807 bits (2084), Expect = 0.0, Method: Composition-based stats. Identities = 450/493 (91%), Positives = 465/493 (94%), Gaps = 6/493 (1%) Query: 1 MSDTTSASAAPAAPAVRFEDFGLSPDILRALSEQGYVHPTPIQAQAIPVVLQGRDVMGAA 60 MSDTTSASAAPAAPAVRFEDFGLSPDIL+AL+EQGYVHPTPIQAQAIPVVLQGRDVMGAA Sbjct: 1 MSDTTSASAAPAAPAVRFEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAA 60 Query: 61 QTGTGKTAGFSLPIIQRLLAHASHSASPARHPVRALILTPTRELADQVADNVKAYSRFTP 120 QTGTGKTAGFSLPIIQRLL HASHSASPARHPVRALILTPTRELADQVADNV AY RFTP Sbjct: 61 QTGTGKTAGFSLPIIQRLLQHASHSASPARHPVRALILTPTRELADQVADNVAAYCRFTP 120 Query: 121 LRSTVVFGGVDMAPQTATLRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLD 180 LRSTVVFGGVDMAPQTA LRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLD Sbjct: 121 LRSTVVFGGVDMAPQTAILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLD 180 Query: 181 MGFLPDLQRIINLLPKQRQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATADRVTQI 240 MGFLPDLQRIINLLPKQRQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATA+ VTQ Sbjct: 181 MGFLPDLQRIINLLPKQRQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENVTQT 240 Query: 241 IYKVNEDAKGDAVAHIIRERQLKQVIVFSNTKIGASRLARTLLAEGVKASAIHGDKTQSE 300 IYKV E AK DAV+ IIR+R+LKQVIVFSNTKIGASRLARTL+AEGVKASAIHGDKTQSE Sbjct: 241 IYKVEEAAKADAVSFIIRQRELKQVIVFSNTKIGASRLARTLVAEGVKASAIHGDKTQSE 300 Query: 301 RMAALESFKQGQIEVLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASG 360 RMAALE+FKQGQIEVLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASG Sbjct: 301 RMAALEAFKQGQIEVLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASG 360 Query: 361 DAISLFCDKDERLLVDIEKLIKKKFERAELTGFAPRMRADRGERGERSERGERGERSDRG 420 DAISLFCDKD+RLL DIEKLIKKKFERAELTGFAPR R ERS+R ERGERS+RG Sbjct: 361 DAISLFCDKDDRLLTDIEKLIKKKFERAELTGFAPRARH------ERSDRAERGERSERG 414 Query: 421 ERAERGERGDRGERSRSSRDGAAPSGRREKVDPWFLKPYEPSATETVSTKPELPKNNRPK 480 ER++RG+R DRGERSRSSR+G A RREKVDPWFLKPYEPSA ETVSTKPEL KNNRPK Sbjct: 415 ERSDRGDRSDRGERSRSSREGGAAPMRREKVDPWFLKPYEPSAVETVSTKPELAKNNRPK 474 Query: 481 PKVAALLGGMPKR 493 KVAALLGGMPKR Sbjct: 475 AKVAALLGGMPKR 487 >ref|YP_004751691.1| ATP-dependent RNA helicase [Collimonas fungivorans Ter331] gb|AEK60868.1| ATP-dependent RNA helicase [Collimonas fungivorans Ter331] Length = 506 Score = 688 bits (1775), Expect = 0.0, Method: Composition-based stats. Identities = 379/495 (76%), Positives = 415/495 (83%), Gaps = 7/495 (1%) Query: 2 SDTTSASAAPAAPAVRFEDFGLSPDILRALSEQGYVHPTPIQAQAIPVVLQGRDVMGAAQ 61 S+ + A P P VRF DFGLSPDILRAL++QGYVHPTPIQA+AIPVVLQGRDVMGAAQ Sbjct: 14 SEMQADPAVPTTPTVRFADFGLSPDILRALNDQGYVHPTPIQAEAIPVVLQGRDVMGAAQ 73 Query: 62 TGTGKTAGFSLPIIQRLLAHASHSASPARHPVRALILTPTRELADQVADNVKAYSRFTPL 121 TGTGKTAGFSLPIIQ LLAHA+ SASPARHPVRALILTPTRELADQVA+NVKAY R TPL Sbjct: 74 TGTGKTAGFSLPIIQLLLAHANTSASPARHPVRALILTPTRELADQVAENVKAYCRHTPL 133 Query: 122 RSTVVFGGVDMAPQTATLRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDM 181 RSTVVFGGVD+APQTA LR+G+EIVIATPGRLLDHVQQKT+NLSQTQILVMDEADRMLDM Sbjct: 134 RSTVVFGGVDIAPQTAALRSGIEIVIATPGRLLDHVQQKTLNLSQTQILVMDEADRMLDM 193 Query: 182 GFLPDLQRIINLLPKQRQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATADRVTQII 241 GFLPDLQRIINLLPK+RQNL+FSATFS EIKKLAA+F NPVTIEVARSNATAD VTQ + Sbjct: 194 GFLPDLQRIINLLPKERQNLMFSATFSGEIKKLAATFLKNPVTIEVARSNATADNVTQTM 253 Query: 242 YKVNEDAKGDAVAHIIRERQLKQVIVFSNTKIGASRLARTLLAEGVKASAIHGDKTQSER 301 Y VNE K +AV++IIRER LKQVIVFSNTKIGAS+LAR L EGV ASAIHGDKTQ+ER Sbjct: 254 YHVNEQTKAEAVSYIIRERNLKQVIVFSNTKIGASKLARHLENEGVNASAIHGDKTQNER 313 Query: 302 MAALESFKQGQIEVLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGD 361 MAALE+FK+G+IEVLVATDVAARGLDIAELPCVIN+DLPYNAEDYVHRIGRTGRAGASGD Sbjct: 314 MAALEAFKRGEIEVLVATDVAARGLDIAELPCVINFDLPYNAEDYVHRIGRTGRAGASGD 373 Query: 362 AISLFCDKDERLLVDIEKLIKKKFERAELTGFAPRMRADRGERGERSERGERGERSDRGE 421 AISL+ DKDERLLVDIEK+IK KF RAELTGF + + ER S RG R+ RGE Sbjct: 374 AISLYADKDERLLVDIEKMIKYKFVRAELTGFVAKPAS--AERERSSGRGADA-RNGRGE 430 Query: 422 RAE-RGERGDRGERSRSSRDGAAPSGRREKVDPWFLKPYEPSATETVSTKPELPKNNRPK 480 R E R DR + S + P+ R+EKVDPWFLKPYEP+ V T P K Sbjct: 431 RGEGRAPASDRSTQHTRSAYTSTPTSRKEKVDPWFLKPYEPTLAAEVDTSSVAPAGGSIK 490 Query: 481 P---KVAALLGGMPK 492 P K+AALLGG+PK Sbjct: 491 PSKVKLAALLGGLPK 505 >ref|YP_001352218.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] gb|ABR89617.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] Length = 513 Score = 675 bits (1742), Expect = 0.0, Method: Composition-based stats. Identities = 385/494 (77%), Positives = 420/494 (85%), Gaps = 8/494 (1%) Query: 4 TTSASAAPAAPAVRFEDFGLSPDILRALSEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTG 63 T+ A+A A PAVRFEDFGL+P+ILRALS+QGYVHPTPIQA+AIPVVLQG DVMGAAQTG Sbjct: 24 TSPAAAVDAHPAVRFEDFGLAPEILRALSDQGYVHPTPIQAEAIPVVLQGIDVMGAAQTG 83 Query: 64 TGKTAGFSLPIIQRLLAHASHSASPARHPVRALILTPTRELADQVADNVKAYSRFTPLRS 123 TGKTAGFSLPIIQ L+AHA+ SASPARHPVRALILTPTRELADQVADNVKAYSR TPLRS Sbjct: 84 TGKTAGFSLPIIQLLMAHANSSASPARHPVRALILTPTRELADQVADNVKAYSRHTPLRS 143 Query: 124 TVVFGGVDMAPQTATLRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGF 183 VVFGGVDMAPQTA LR+GVEIVIATPGRLLDH+QQKT+NLSQTQILVMDEADRMLDMGF Sbjct: 144 VVVFGGVDMAPQTAALRSGVEIVIATPGRLLDHIQQKTLNLSQTQILVMDEADRMLDMGF 203 Query: 184 LPDLQRIINLLPKQRQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATADRVTQIIYK 243 LPDLQRIINLLPKQRQNL+FSATFSPEIKKLAA+F +PVTIEVARSNATA+ VTQI+YK Sbjct: 204 LPDLQRIINLLPKQRQNLMFSATFSPEIKKLAATFLKDPVTIEVARSNATAENVTQIVYK 263 Query: 244 VNEDAKGDAVAHIIRERQLKQVIVFSNTKIGASRLARTLLAEGVKASAIHGDKTQSERMA 303 V E KGDAV++IIRER LKQVIVFSNTKIGASRLAR L EGVKASAIHGDK+Q+ERMA Sbjct: 264 VEEGDKGDAVSYIIRERGLKQVIVFSNTKIGASRLARQLENEGVKASAIHGDKSQAERMA 323 Query: 304 ALESFKQGQIEVLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAI 363 ALE+FK G IEVLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAI Sbjct: 324 ALEAFKNGTIEVLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAI 383 Query: 364 SLFCDKDERLLVDIEKLIKKKFERAELTGFAP--RMRADRGERGERSERGE-RGERSDRG 420 SL+ DKD RLLVDIEK+IK KF A+L GF P ++R ER R + E RG S+R Sbjct: 384 SLYSDKDARLLVDIEKMIKHKFVPAQLAGFVPAGNRASERKERSPRRDDSESRGRGSERR 443 Query: 421 ERAERGERGDRGERSRSSRDGAAPSGRREKVDPWFLKPYEPSATETVSTKP-ELPKNNRP 479 E A R G R SRS+ AAP R+EK+DP+F KPYEP+ + KP E P Sbjct: 444 ESAPREASGGRDPGSRSAY--AAP--RKEKIDPFFTKPYEPAPSTISEAKPAEQAPAKPP 499 Query: 480 KPKVAALLGGMPKR 493 K K+AALLGG PKR Sbjct: 500 KHKMAALLGGAPKR 513 >ref|YP_001098795.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans] emb|CAL60666.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans] Length = 502 Score = 655 bits (1691), Expect = 0.0, Method: Composition-based stats. Identities = 370/488 (75%), Positives = 405/488 (82%), Gaps = 12/488 (2%) Query: 13 APAVRFEDFGLSPDILRALSEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSL 72 APA+RF+DFGL+P+IL+AL++QGYVHPTPIQA+AIPVVL+G DVMGAAQTGTGKTAGFSL Sbjct: 20 APAIRFQDFGLAPEILKALNDQGYVHPTPIQAEAIPVVLKGMDVMGAAQTGTGKTAGFSL 79 Query: 73 PIIQRLLAHASHSASPARHPVRALILTPTRELADQVADNVKAYSRFTPLRSTVVFGGVDM 132 PIIQ L+AHA+ SASPARHPVRALILTPTRELADQVA NVKAYSR TPLRS VVFGG+DM Sbjct: 80 PIIQLLMAHANSSASPARHPVRALILTPTRELADQVAANVKAYSRHTPLRSLVVFGGMDM 139 Query: 133 APQTATLRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQRIIN 192 PQTA LR GVEIVIATPGRLLDHVQQKT+NLSQTQILVMDEADRMLDMGFLPDLQRIIN Sbjct: 140 TPQTAALRGGVEIVIATPGRLLDHVQQKTINLSQTQILVMDEADRMLDMGFLPDLQRIIN 199 Query: 193 LLPKQRQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATADRVTQIIYKVNEDAKGDA 252 LLPKQRQNL+FSATFSPEIKKLAA+F +PVTIEVARSNATA+ VTQIIYKV E+AK DA Sbjct: 200 LLPKQRQNLMFSATFSPEIKKLAATFLKDPVTIEVARSNATAENVTQIIYKVEEEAKRDA 259 Query: 253 VAHIIRERQLKQVIVFSNTKIGASRLARTLLAEGVKASAIHGDKTQSERMAALESFKQGQ 312 V+ IIRER LKQVIVFSNTKIGASRLAR L +EGVKASAIHGDK+QSERM ALE FK G Sbjct: 260 VSFIIRERGLKQVIVFSNTKIGASRLARQLESEGVKASAIHGDKSQSERMQALEQFKNGT 319 Query: 313 IEVLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFCDKDER 372 IEVLVATDVAARGLDIAELPCVIN+DLPYNAEDYVHRIGRTGRAGASGDAISLF DKD R Sbjct: 320 IEVLVATDVAARGLDIAELPCVINFDLPYNAEDYVHRIGRTGRAGASGDAISLFSDKDAR 379 Query: 373 LLVDIEKLIKKKFERAELTGFAPRMRADRGERGERSERGERGERSDRGE----RAERGER 428 LLVDIEK+IK KF AEL GF P G ERS ERS R + R R Sbjct: 380 LLVDIEKMIKHKFVPAELIGFTP----SSGRTAERSHDRRAHERSPRKDESAPRPSRAPE 435 Query: 429 GDRGERSRSSRDGAAPSGRREKVDPWFLKPYEPSATETVSTKP---ELPKNNRPKPKVAA 485 G S SR A + R+EK+DP+F +PYEP+ + VS ++P + K K+AA Sbjct: 436 RSPGAASNGSRSAYAAAPRKEKIDPFFTRPYEPAPSTMVSDNKLADQVPAKPQ-KHKMAA 494 Query: 486 LLGGMPKR 493 LLGG PKR Sbjct: 495 LLGGAPKR 502 >ref|ZP_08274385.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480] gb|EGF32148.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480] Length = 504 Score = 649 bits (1673), Expect = 0.0, Method: Composition-based stats. Identities = 367/508 (72%), Positives = 406/508 (79%), Gaps = 21/508 (4%) Query: 1 MSDTTSASAAPAAPAVRFEDFGLSPDILRALSEQGYVHPTPIQAQAIPVVLQGRDVMGAA 60 M+D + + + PA+RFEDFGLS +ILRAL++QGY HPTPIQA AIPVVLQGRDVMGAA Sbjct: 1 MTDIQTDAVPDSEPALRFEDFGLSAEILRALADQGYDHPTPIQAAAIPVVLQGRDVMGAA 60 Query: 61 QTGTGKTAGFSLPIIQRLLAHASHSASPARHPVRALILTPTRELADQVADNVKAYSRFTP 120 QTGTGKTAGFSLPIIQ LLA+AS+SASPARHPVRALILTPTRELADQVA+NVKAY R TP Sbjct: 61 QTGTGKTAGFSLPIIQLLLANASNSASPARHPVRALILTPTRELADQVAENVKAYCRHTP 120 Query: 121 LRSTVVFGGVDMAPQTATLRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLD 180 LRSTVVFGG+DMAPQTA LRAGVEIVIATPGRLLDHVQQKT+NLSQTQILVMDEADRMLD Sbjct: 121 LRSTVVFGGMDMAPQTAALRAGVEIVIATPGRLLDHVQQKTLNLSQTQILVMDEADRMLD 180 Query: 181 MGFLPDLQRIINLLPKQRQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATADRVTQI 240 MGFLPDLQRIINLLPK+RQNL+FSATFS EIKKLA+SF +NPVTIEVARSN TADRVTQ+ Sbjct: 181 MGFLPDLQRIINLLPKKRQNLMFSATFSGEIKKLASSFLDNPVTIEVARSNQTADRVTQV 240 Query: 241 IYKVN-EDAKGDAVAHIIRERQLKQVIVFSNTKIGASRLARTLLAEGVKASAIHGDKTQS 299 +YKV+ +DAK D VAH+IR RQLKQV+VFSNTKIGASRLAR L GVKASAIHGDKTQS Sbjct: 241 VYKVDSDDAKRDIVAHLIRGRQLKQVLVFSNTKIGASRLARELEKGGVKASAIHGDKTQS 300 Query: 300 ERMAALESFKQGQIEVLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGAS 359 ERMAALE+FK G+I+VLVATDVAARGLDI++LPCVINYDLPYNAEDYVHRIGRTGRAGAS Sbjct: 301 ERMAALEAFKGGEIDVLVATDVAARGLDISDLPCVINYDLPYNAEDYVHRIGRTGRAGAS 360 Query: 360 GDAISLFCDKDERLLVDIEKLIKKKFERAELTGFAPRMRADRGERGERSERGE------- 412 GDAISLF KDERLL+DIEKLI KF AEL G+ P + ER ER R + Sbjct: 361 GDAISLFTTKDERLLLDIEKLINHKFVPAELVGYTPPV-----ERAERRPRRDAEAAVAP 415 Query: 413 ------RGERSDRGERAERGERGDRGERSRSSRDGAA--PSGRREKVDPWFLKPYEPSAT 464 + + S SSR + P RREKVDPWF KPYEP+ Sbjct: 416 LAAGAVSAQVPTERPVRPPRPFREDSSHSESSRTDTSRPPFQRREKVDPWFSKPYEPNVA 475 Query: 465 ETVSTKPELPKNNRPKPKVAALLGGMPK 492 V N+ KP+ A LLGG+PK Sbjct: 476 APVEPVGATAAANKNKPRRAVLLGGVPK 503