BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4449.p (298 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776962.1| transcription regulator protein [Herbaspiril... 508 e-142 ref|YP_004751693.1| putative transcriptional regulator [Collimon... 375 e-102 ref|YP_001352220.1| LysR family transcriptional regulator [Janth... 372 e-101 ref|YP_001098797.1| transcriptional regulator [Herminiimonas ars... 368 e-100 ref|YP_002981965.1| LysR family transcriptional regulator [Ralst... 280 2e-73 >ref|YP_003776962.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65054.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 312 Score = 508 bits (1307), Expect = e-142, Method: Composition-based stats. Identities = 262/295 (88%), Positives = 278/295 (94%) Query: 1 MIDRKGSFAAAAVALDRVPSALTYSVRKLEDDLDVLLFDRRGHRAQLTPAGLQLLQEGRH 60 MIDRKGSFAAAAVALDRVPSALTYSVRKLEDDLDVLLFDRRGHRAQLTPAGLQLLQEGRH Sbjct: 13 MIDRKGSFAAAAVALDRVPSALTYSVRKLEDDLDVLLFDRRGHRAQLTPAGLQLLQEGRH 72 Query: 61 LLLAASDLEQRVKRTATGRETELHIVLNSLIPFDKMLPVIEAFDREESGTRLRFTPGVLT 120 LLLAA+DLEQRVKRTATGRETELHIVLNSLIPFDKMLP+I AFDRE+SGTRLRFTPGVLT Sbjct: 73 LLLAANDLEQRVKRTATGRETELHIVLNSLIPFDKMLPIIAAFDREQSGTRLRFTPGVLT 132 Query: 121 GAWEKLIEGRANLVIGVTLDGPEVVRTSGRFQMQELGSVDWVFAVAPTHPLASATEPLSA 180 GAWEKLIEGRANLVIGVTLDGPEVVRTSGRFQMQELG+VDWVF VAP HPLA EPLSA Sbjct: 133 GAWEKLIEGRANLVIGVTLDGPEVVRTSGRFQMQELGAVDWVFVVAPQHPLAGVEEPLSA 192 Query: 181 ELVRSHRAIAVGDNSQSLPTLTMGLLSGQETLTVPTVAAKLQAQLAGLGCGHLPRYWAAP 240 ELVRSHRAIAVGDNSQSLPTLTMGLLSGQETLTV TVA KLQAQLAGLGCGHLPR WA P Sbjct: 193 ELVRSHRAIAVGDNSQSLPTLTMGLLSGQETLTVATVADKLQAQLAGLGCGHLPRIWAEP 252 Query: 241 YLASGALIEKQTQMSKPHENFLIAWPKAEQGKSLKWFLQHLSLPVVQRALLSGAP 295 YLASGAL+EKQT +KP++NF++AWPKAEQGKSLKWF+QHL+ P V+++L+ P Sbjct: 253 YLASGALVEKQTLAAKPNDNFMVAWPKAEQGKSLKWFIQHLAQPHVRQSLIGPVP 307 >ref|YP_004751693.1| putative transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK60870.1| putative transcriptional regulator with periplasmic binding protein domain (LysR family) [Collimonas fungivorans Ter331] Length = 317 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 198/296 (66%), Positives = 233/296 (78%) Query: 2 IDRKGSFAAAAVALDRVPSALTYSVRKLEDDLDVLLFDRRGHRAQLTPAGLQLLQEGRHL 61 I RKGSFAAAAV LDRVPSALTYSVRKLE+DLDVLLFDRRGHRA+LT AG +LL EGRHL Sbjct: 14 IARKGSFAAAAVELDRVPSALTYSVRKLEEDLDVLLFDRRGHRAKLTSAGQELLTEGRHL 73 Query: 62 LLAASDLEQRVKRTATGRETELHIVLNSLIPFDKMLPVIEAFDREESGTRLRFTPGVLTG 121 LLAA +LE+RVKR ATG E EL IVL+S+IPFD +LP+IEAFDRE +GTRLR + L+G Sbjct: 74 LLAAQELERRVKRAATGWEVELRIVLDSIIPFDSLLPLIEAFDRENAGTRLRISHETLSG 133 Query: 122 AWEKLIEGRANLVIGVTLDGPEVVRTSGRFQMQELGSVDWVFAVAPTHPLASATEPLSAE 181 WE L+ RA+L IG GP+ +R SG FQ ++LG ++W FAVAP HPLA+A EPL+A Sbjct: 134 VWEALLSDRADLAIGAPHGGPDSIRMSGGFQTRQLGMIEWAFAVAPGHPLANAPEPLTAS 193 Query: 182 LVRSHRAIAVGDNSQSLPTLTMGLLSGQETLTVPTVAAKLQAQLAGLGCGHLPRYWAAPY 241 L++ +RA+AVGD +SLP +T GLLSGQ+ LTVP++AAKLQAQL GLGCGHLPR+ AAPY Sbjct: 194 LIQQYRAVAVGDTGRSLPGITSGLLSGQDILTVPSIAAKLQAQLRGLGCGHLPRWLAAPY 253 Query: 242 LASGALIEKQTQMSKPHENFLIAWPKAEQGKSLKWFLQHLSLPVVQRALLSGAPPH 297 ASGALIEKQT +KP + IAW GKSLKWF+ LS PVVQ LL PH Sbjct: 254 FASGALIEKQTIEAKPIDKTQIAWRTPVVGKSLKWFITQLSEPVVQHTLLGSPAPH 309 >ref|YP_001352220.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] gb|ABR90685.1| transcriptional regulator, LysR family [Janthinobacterium sp. Marseille] Length = 305 Score = 372 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 196/291 (67%), Positives = 233/291 (80%) Query: 2 IDRKGSFAAAAVALDRVPSALTYSVRKLEDDLDVLLFDRRGHRAQLTPAGLQLLQEGRHL 61 IDRKGSFAAAAVALDRVPSALTYSVRKLE+DLDVLLFDRRGHRA+LT AG +LL EGRHL Sbjct: 14 IDRKGSFAAAAVALDRVPSALTYSVRKLEEDLDVLLFDRRGHRAKLTAAGQELLTEGRHL 73 Query: 62 LLAASDLEQRVKRTATGRETELHIVLNSLIPFDKMLPVIEAFDREESGTRLRFTPGVLTG 121 L AA +LEQRVKRTA+G E EL IVL+S+IPF+KMLP+I FD E SGT+LRF+ VL+G Sbjct: 74 LRAADELEQRVKRTASGWEVELRIVLDSIIPFEKMLPLIREFDAEGSGTQLRFSTEVLSG 133 Query: 122 AWEKLIEGRANLVIGVTLDGPEVVRTSGRFQMQELGSVDWVFAVAPTHPLASATEPLSAE 181 WE L G A+L IGV+ DGPE+VR SG F+++ LG VDWVFAVAP HPLA +PL+ + Sbjct: 134 VWETLTSGAADLAIGVSSDGPEIVRGSGDFRVRPLGEVDWVFAVAPGHPLAGMPDPLAPQ 193 Query: 182 LVRSHRAIAVGDNSQSLPTLTMGLLSGQETLTVPTVAAKLQAQLAGLGCGHLPRYWAAPY 241 LV+ +RA+A GD+ + LP+++ GLL+GQ TLTVP + KL+AQLAGLGCGHLPR WAAPY Sbjct: 194 LVQQYRAVAAGDSGRFLPSVSAGLLTGQATLTVPDIHEKLKAQLAGLGCGHLPRKWAAPY 253 Query: 242 LASGALIEKQTQMSKPHENFLIAWPKAEQGKSLKWFLQHLSLPVVQRALLS 292 LASG LIEKQT +KP AW + +GK LKWFL L+ P VQR LL+ Sbjct: 254 LASGELIEKQTVETKPTGLPQYAWRSSSRGKCLKWFLNKLADPDVQRELLA 304 >ref|YP_001098797.1| transcriptional regulator [Herminiimonas arsenicoxydans] emb|CAL60668.1| putative LysR-family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 305 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 192/291 (65%), Positives = 233/291 (80%) Query: 2 IDRKGSFAAAAVALDRVPSALTYSVRKLEDDLDVLLFDRRGHRAQLTPAGLQLLQEGRHL 61 IDRKGSF AAAVALDRVPSALTYSVRKLE+DLDVLLFDRRGHRA+LTPAG +LL EGRHL Sbjct: 14 IDRKGSFGAAAVALDRVPSALTYSVRKLEEDLDVLLFDRRGHRAKLTPAGQELLTEGRHL 73 Query: 62 LLAASDLEQRVKRTATGRETELHIVLNSLIPFDKMLPVIEAFDREESGTRLRFTPGVLTG 121 L AA++LEQRVKRTATG E EL IVL+++IPF+KMLP+I FD ++SGTRLRF+ VL+G Sbjct: 74 LRAAAELEQRVKRTATGWEVELRIVLDAIIPFEKMLPLIREFDLQDSGTRLRFSTEVLSG 133 Query: 122 AWEKLIEGRANLVIGVTLDGPEVVRTSGRFQMQELGSVDWVFAVAPTHPLASATEPLSAE 181 WE+LI G A+L IGV +GP+++R SG F+++ LG+++WVFAVA HPLA+ EPLS Sbjct: 134 TWERLISGDADLAIGVAYEGPDLIRGSGGFRVKPLGNLEWVFAVALHHPLATMEEPLSVT 193 Query: 182 LVRSHRAIAVGDNSQSLPTLTMGLLSGQETLTVPTVAAKLQAQLAGLGCGHLPRYWAAPY 241 ++ +RA+ GD+ + LP++T GLL+GQ TLTVPTV KL AQLAGLGCG+LPR WAAPY Sbjct: 194 DIQRYRAVVTGDSGRMLPSITAGLLTGQATLTVPTVHDKLAAQLAGLGCGYLPRKWAAPY 253 Query: 242 LASGALIEKQTQMSKPHENFLIAWPKAEQGKSLKWFLQHLSLPVVQRALLS 292 LASGALIEKQT +KP AW +GK LKWFL L+ P VQ LL+ Sbjct: 254 LASGALIEKQTSENKPAGIPQYAWRTDGRGKCLKWFLAKLADPAVQDMLLA 304 >ref|YP_002981965.1| LysR family transcriptional regulator [Ralstonia pickettii 12D] gb|ACS63293.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D] Length = 300 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 156/290 (53%), Positives = 199/290 (68%), Gaps = 5/290 (1%) Query: 2 IDRKGSFAAAAVALDRVPSALTYSVRKLEDDLDVLLFDRRGHRAQLTPAGLQLLQEGRHL 61 I+RKGSFAAAA L +VPSALTY VRKLEDDLDVLLFDRR HRA+LTPAG LL EGRHL Sbjct: 14 IERKGSFAAAAHELGKVPSALTYVVRKLEDDLDVLLFDRRRHRAELTPAGRALLDEGRHL 73 Query: 62 LLAASDLEQRVKRTATGRETELHIVLNSLIPFDKMLPVIEAFDREESGTRLRFTPGVLTG 121 L AA DL +RVKR ATG E L IV++ L+ F ++PVI+ F E + TRLRF VL G Sbjct: 74 LQAADDLARRVKRLATGWEATLTIVVDDLVHFRALMPVIQDFYAENTATRLRFCREVLAG 133 Query: 122 AWEKLIEGRANLVIGVTLDGPEVVRTSGRFQMQELGSVDWVFAVAPTHPLASATEPLSAE 181 W+ L+ GRA+L+I GP V Q + +G++ +VFAVA HPLA EPL A Sbjct: 134 TWDALLSGRADLLI-----GPAQVMQVQGIQTRTVGNIPFVFAVAAHHPLAQLEEPLPAT 188 Query: 182 LVRSHRAIAVGDNSQSLPTLTMGLLSGQETLTVPTVAAKLQAQLAGLGCGHLPRYWAAPY 241 + HR +AVGD S++LP T+G+++GQ+TL VP++A K+QAQ+ GLGCG LP A PY Sbjct: 189 AITRHRIVAVGDTSRNLPARTIGVMAGQDTLVVPSMADKVQAQIRGLGCGWLPVPLAQPY 248 Query: 242 LASGALIEKQTQMSKPHENFLIAWPKAEQGKSLKWFLQHLSLPVVQRALL 291 L SG LI K+T K F +AW +GK+L+W++ L P + +AL+ Sbjct: 249 LDSGVLIAKETSEDKRAGTFQVAWRNNMRGKALQWWVDKLEDPRLGQALM 298