BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4437.p (366 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_296762.1| glycosyl transferase family protein [Ralstonia ... 501 e-139 ref|YP_003776954.1| ADP-heptose:LPS heptosyltransferase [Herbasp... 499 e-139 ref|YP_004751698.1| glycosyl transferase family protein [Collimo... 409 e-112 ref|YP_001095822.1| glycosyl transferase family protein [Shewane... 209 4e-52 ref|YP_003554853.1| hypothetical protein SVI_0104 [Shewanella vi... 182 1e-43 >ref|YP_296762.1| glycosyl transferase family protein [Ralstonia eutropha JMP134] gb|AAZ61918.1| Glycosyl transferase, family 9 [Ralstonia eutropha JMP134] Length = 376 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 259/365 (70%), Positives = 291/365 (79%), Gaps = 1/365 (0%) Query: 2 PTQLIPQDLLRSSDRILFVAHLAIGDFTYLQNFFKAFAAQNPQLKIDLWVDEVRRTGDAS 61 P LIP DLL+ S +ILF+AHLA+GDFTYLQNFFKAFA NP L+I LWVDEVRRTGDA Sbjct: 11 PQTLIPADLLKRSKKILFIAHLALGDFTYLQNFFKAFAQANPHLEIHLWVDEVRRTGDAK 70 Query: 62 KWEFLRKYSLYDWLAACPFFNKVYTRTYSPALLEESVAEAQAAHYPIVVSLATLRPHQYA 121 WE LRKYSLYDWLAACPFF+KVYTRTYSP L E S+ EAQ HYPIVVSLATLRP QYA Sbjct: 71 AWEHLRKYSLYDWLAACPFFSKVYTRTYSPELYEASIREAQQEHYPIVVSLATLRPPQYA 130 Query: 122 ALARRLSPQGMVIGMQDRIRFYQPHHVLAYRKLDAAIPRYRAADGQ-HHITDVYAHWFRQ 180 LAR +SP G V+GM +RFYQPHH+LAYRKLDA+IP Y+ HI+DVYAHWFRQ Sbjct: 131 NLARTISPDGFVVGMTRPVRFYQPHHLLAYRKLDASIPPYKVDRASPQHISDVYAHWFRQ 190 Query: 181 LSGLEVDAAARMPFVEIPQQWREEAQQRLASWGFDDGQRKLVVINPYAKTKKRCWSLAQV 240 +SGLEV A R PFV+IP QW++ AQ LA+WGF + KLV INPYAKTKKRCW+L QV Sbjct: 191 ISGLEVSPAERFPFVDIPAQWQQYAQDTLAAWGFLPREGKLVFINPYAKTKKRCWTLEQV 250 Query: 241 GQLIKAMQALPQWAQSDFVINAVPQELPHARQEIARQQLERTVLFSAEENFFQLPALLEQ 300 LI+AMQ P+W S F++NAVPQEL HAR+ I+ L RT LFSAE+NFFQLPA+L Q Sbjct: 251 AALIQAMQQHPRWRDSCFIVNAVPQELAHAREVISSYSLARTELFSAEDNFFQLPAILAQ 310 Query: 301 ADLIISVETAVMHLANAVHVPVIALMRQKNPEWVPYDAAHSTVVTTQARRDWVERISVEQ 360 DLIISVETAVMHLANAVHVPVIALMRQKNPEWVP D +STV+T RRDWV I VEQ Sbjct: 311 CDLIISVETAVMHLANAVHVPVIALMRQKNPEWVPIDRQNSTVITAANRRDWVNAIPVEQ 370 Query: 361 VLKAI 365 V+K I Sbjct: 371 VMKTI 375 >ref|YP_003776954.1| ADP-heptose:LPS heptosyltransferase [Herbaspirillum seropedicae SmR1] gb|ADJ65046.1| ADP-heptose:LPS heptosyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 367 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 255/367 (69%), Positives = 296/367 (80%), Gaps = 2/367 (0%) Query: 1 MPTQ--LIPQDLLRSSDRILFVAHLAIGDFTYLQNFFKAFAAQNPQLKIDLWVDEVRRTG 58 M TQ LIP DLL+ SD+ILF+AHLA+GDFTYLQNFFKAFAAQ+P LK+ LWVDEVRRT Sbjct: 1 MSTQATLIPADLLKKSDKILFIAHLALGDFTYLQNFFKAFAAQHPHLKVHLWVDEVRRTA 60 Query: 59 DASKWEFLRKYSLYDWLAACPFFNKVYTRTYSPALLEESVAEAQAAHYPIVVSLATLRPH 118 D+S+W L+KY+LYDW AACPFF KVYTRTYSPAL +S+ EA+A HYPIVVSLATLRPH Sbjct: 61 DSSQWPHLQKYALYDWTAACPFFAKVYTRTYSPALYRDSIEEARAEHYPIVVSLATLRPH 120 Query: 119 QYAALARRLSPQGMVIGMQDRIRFYQPHHVLAYRKLDAAIPRYRAADGQHHITDVYAHWF 178 YA LAR +SP+G V+GM+ ++ QPHH+LAYRKLDA +P YR++ +HHI+DVYAHWF Sbjct: 121 LYAGLAREISPEGWVVGMKKKVSLLQPHHLLAYRKLDAVMPPYRSSQPEHHISDVYAHWF 180 Query: 179 RQLSGLEVDAAARMPFVEIPQQWREEAQQRLASWGFDDGQRKLVVINPYAKTKKRCWSLA 238 RQLSGLEV AR PFV+IP QWR+ AQ +LA+W F KLV INPYAKT+KRCW L Sbjct: 181 RQLSGLEVTGQARFPFVDIPPQWRQYAQDQLAAWQFAPRTGKLVFINPYAKTRKRCWPLE 240 Query: 239 QVGQLIKAMQALPQWAQSDFVINAVPQELPHARQEIARQQLERTVLFSAEENFFQLPALL 298 V LI+AMQ W + ++NAVPQEL HAR+ I R L+ T LFSAEENFFQLPA+L Sbjct: 241 HVADLIQAMQQREGWQDARVIVNAVPQELAHAREVIGRYGLQGTELFSAEENFFQLPAML 300 Query: 299 EQADLIISVETAVMHLANAVHVPVIALMRQKNPEWVPYDAAHSTVVTTQARRDWVERISV 358 DLIISVETAVMHLANAVHVPVIALMRQKNPEWVP D AHSTV+T RRDWV+ +SV Sbjct: 301 AACDLIISVETAVMHLANAVHVPVIALMRQKNPEWVPVDRAHSTVITAPGRRDWVKAVSV 360 Query: 359 EQVLKAI 365 EQV+KAI Sbjct: 361 EQVMKAI 367 >ref|YP_004751698.1| glycosyl transferase family protein [Collimonas fungivorans Ter331] gb|AEK60875.1| glycosyl transferase, family 9 [Collimonas fungivorans Ter331] Length = 396 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 211/371 (56%), Positives = 265/371 (71%), Gaps = 6/371 (1%) Query: 1 MPTQLIPQDLLRSSDRILFVAHLAIGDFTYLQNFFKAFAAQNPQLKIDLWVDEVRRTGDA 60 M QL+P ++L+ +D+ILF+AHLA+GDFTYLQN F+AFA P +KI +WVDEVRRT + Sbjct: 23 MTAQLVPAEILKKTDKILFIAHLALGDFTYLQNCFQAFAQAYPHIKIHIWVDEVRRTKNT 82 Query: 61 SKWEFLRKYSLYDWLAACPFFNKVYTRTYSPALLEESVAEAQAAHYPIVVSLATLRPHQY 120 + W FL+KY+LYDWLA CPF K+Y +TYSPAL EES+ EAQ YP+VVSL+TLRP Y Sbjct: 83 AAWPFLKKYALYDWLAECPFVAKIYRQTYSPALFEESIVEAQKQQYPLVVSLSTLRPPMY 142 Query: 121 AALARRLSPQGMVIGMQDRIRFYQPHHVLAYRKLDAAIPRYRAADGQHHITDVYAHWFRQ 180 A LAR++SPQG V GM+ H LAYRKLDAA R A HI++VYA WF + Sbjct: 143 ATLARQISPQGFVAGMKKPAGILALHKRLAYRKLDAAFDPDRVAQRGVHISEVYAAWFHR 202 Query: 181 LSGLEVDAAARMPFVEIPQQWREEAQQRLASWGFDDGQR------KLVVINPYAKTKKRC 234 L G++ A +R PFV IP QW AQ++L WGF+ +R KLV INPYAKT+KRC Sbjct: 203 LFGMDSAATSRQPFVRIPDQWSRYAQEQLKLWGFERDRRQSANPAKLVFINPYAKTRKRC 262 Query: 235 WSLAQVGQLIKAMQALPQWAQSDFVINAVPQELPHARQEIARQQLERTVLFSAEENFFQL 294 W L +V +L+ A++A W + F++N VP+E+ AR +ER LFSA+ENFFQL Sbjct: 263 WPLERVVELVAAIRAQDSWKDTRFIVNVVPEEMAQARTFFDGHAVERLQLFSAQENFFQL 322 Query: 295 PALLEQADLIISVETAVMHLANAVHVPVIALMRQKNPEWVPYDAAHSTVVTTQARRDWVE 354 PA+L + DLIISVETAVMHLANAV VPVIALMRQKNPEW P D +S V+TT RRDWV+ Sbjct: 323 PAMLRECDLIISVETAVMHLANAVQVPVIALMRQKNPEWAPIDKENSIVITTANRRDWVK 382 Query: 355 RISVEQVLKAI 365 I+V QV+ + Sbjct: 383 AITVAQVIAVL 393 >ref|YP_001095822.1| glycosyl transferase family protein [Shewanella loihica PV-4] gb|ABO25563.1| glycosyl transferase, family 9 [Shewanella loihica PV-4] Length = 390 Score = 209 bits (533), Expect = 4e-52, Method: Composition-based stats. Identities = 125/366 (34%), Positives = 202/366 (55%), Gaps = 8/366 (2%) Query: 5 LIPQDLLRSSDRILFVAHLAIGDFTYLQNFFKAFAAQNPQLKIDLWVDEVRRTGDASKWE 64 LIP + L + R+LFV+ LA+GDF Y++ F A Q+P L++D+W+D+ R D+ W Sbjct: 3 LIPSERLAQARRLLFVSPLALGDFLYIKTFLAALKQQHPALEVDIWLDDNRNNQDS--WR 60 Query: 65 FLRKYSLYDWLAACPFFNKVYTRTYSPALLEESVAEAQAAHYPIVVSLATLRPHQYAALA 124 R + W+AA P F++ Y + S A+ + V A+A Y +V++ + + Q++ALA Sbjct: 61 LSRSKIMQQWIAAEPAFSRSYGCSDSKAMQDRQVEAAKALDYDLVITHSGSKSEQFSALA 120 Query: 125 RRLSPQGMVIGMQDRIRFYQPHHVLAYRKLDAAIPRYRAADG-QHHITDVYAHWFRQLSG 183 RR+SP+G ++ + +F +R D AA G QHHITD Y +++G Sbjct: 121 RRISPKGFIVTSLAKSKFGGLLDPWFFRHSDKTFKIDVAALGEQHHITDRYYQLLHRVAG 180 Query: 184 LEVDAAARMPFVEIPQQWREEAQQRLASWGFDDGQRKLVVINPYAKTKKRCWSLAQVGQL 243 L +D +A MP + I + E A+ L+ Q +L +N + KKR W +Q+ +L Sbjct: 181 LTLDKSAFMPSLTITPEVTETAKAWLSKTFHGQSQGRLYFLNHLSTNKKRDWHQSQLFEL 240 Query: 244 IKAMQALPQWAQSDFVINAVPQELPHARQEIARQQL---ERTVLFSAEENFFQLPALLEQ 300 I + Q S F++N+ P+ Q IA + + F+ ++NFF+LPA++ Sbjct: 241 IARLTE--QAPDSRFIVNSTPENFSALEQAIADEPKLANSQVAAFTVQDNFFELPAMIAA 298 Query: 301 ADLIISVETAVMHLANAVHVPVIALMRQKNPEWVPYDAAHSTVVTTQARRDWVERISVEQ 360 AD++I+VETA+MH A A P+IA+MRQK P W P + S V+ + +V I V++ Sbjct: 299 ADMVITVETAIMHFATASQRPLIAMMRQKKPYWAPPETTSSKVLYASTGKGYVCDIGVDE 358 Query: 361 VLKAIA 366 VL +A Sbjct: 359 VLATLA 364 >ref|YP_003554853.1| hypothetical protein SVI_0104 [Shewanella violacea DSS12] dbj|BAJ00075.1| conserved hypothetical protein [Shewanella violacea DSS12] Length = 392 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 111/364 (30%), Positives = 185/364 (50%), Gaps = 11/364 (3%) Query: 5 LIPQDLLRSSDRILFVAHLAIGDFTYLQNFFKAFAAQNPQLKIDLWVDEVRRTGDASKWE 64 +I L S+ R+LF++ +A+GDF YL+ F A QN ++ID+W+D+ R DA W Sbjct: 26 IISSTQLESAKRLLFISPVALGDFLYLKTFLIALKKQNSHIEIDIWLDDNRNNSDA--WR 83 Query: 65 FLRKYSLYDWLAACPFFNKVYTRTYSPALLEESVAEAQAAHYPIVVSLATLRPHQYAALA 124 R + W+ A P F + Y S + +AQA +Y ++++ + + Q++ +A Sbjct: 84 LSRSKIMQQWIEAEPAFTRSYGCCSSEKQQRAQIFDAQAINYDLIITHSGSKSEQFSNVA 143 Query: 125 RRLSPQGMVIGMQDRIRFYQPHHVLAYRKLDAAIP-RYRAADGQHHITDVYAHWFRQLSG 183 R + P ++ + +++ +R D +HHITD Y ++ G Sbjct: 144 REIGPDAFIVSSIGKSKYFGLIDSFLFRHSDRLFKLEENNLPAKHHITDRYYQLLNRIVG 203 Query: 184 LEVDAAARMPFVEIPQQWREEAQQRLASWGFDDG-QRKLVVINPYAKTKKRCWSLAQVGQ 242 +++D MP + IP + Q L + D G Q L+ +N + KR W +Q+ + Sbjct: 204 IKLDKNDFMPSLTIPNEIAIITQNWLKTQFTDSGRQGPLIFLNHLSTNSKRDWQESQLFE 263 Query: 243 LIKAMQALPQWAQSDFVINAVPQELPHA----RQEIARQQLERTVLFSAEENFFQLPALL 298 LIK + + S FV+N + + I L+ +V F+ E+FF+LP+++ Sbjct: 264 LIKLIGN--KSPDSRFVVNVTKENYKKVSDAIKNNINLASLQVSV-FTVNEHFFELPSMI 320 Query: 299 EQADLIISVETAVMHLANAVHVPVIALMRQKNPEWVPYDAAHSTVVTTQARRDWVERISV 358 ADL+I+VETA+MH A A + P+IA+MRQK P W P + S V+ + +V ISV Sbjct: 321 ASADLVITVETAIMHFATASNRPLIAMMRQKKPYWAPPSSQTSRVLYASKGKGYVSDISV 380 Query: 359 EQVL 362 QVL Sbjct: 381 NQVL 384