BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4433.p (156 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776949.1| hypothetical protein Hsero_3562 [Herbaspiril... 299 1e-79 ref|YP_004751703.1| hypothetical protein CFU_1048 [Collimonas fu... 271 2e-71 ref|ZP_08275493.1| LSU m3Psi1915 methyltransferase RlmH [Oxaloba... 268 3e-70 ref|YP_001098886.1| rRNA large subunit methyltransferase [Hermin... 265 3e-69 ref|YP_001352229.1| rRNA large subunit methyltransferase [Janthi... 260 5e-68 >ref|YP_003776949.1| hypothetical protein Hsero_3562 [Herbaspirillum seropedicae SmR1] gb|ADJ65041.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 156 Score = 299 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 155/156 (99%), Positives = 155/156 (99%) Query: 1 MQLVIAAVGHKMPAWIETGFQEYAKRMPPECRIILKEIKPVERSGSRTAETVMAQEREKI 60 MQLVIAAVGHKMPAWIETGFQEYAKRMPPECRIILKEIKPVERSGSRTAETVMAQEREKI Sbjct: 1 MQLVIAAVGHKMPAWIETGFQEYAKRMPPECRIILKEIKPVERSGSRTAETVMAQEREKI 60 Query: 61 EAALPKGARVIALDERGRDWTSVQLSQQLEQWQQDGRDVAFVIGGADGLDPGFKAGADTL 120 EAALPKGARVIALDERGRDWTSVQLSQQL QWQQDGRDVAFVIGGADGLDPGFKAGADTL Sbjct: 61 EAALPKGARVIALDERGRDWTSVQLSQQLVQWQQDGRDVAFVIGGADGLDPGFKAGADTL 120 Query: 121 IRISSMTLPHGMVRVMLAEQLYRAWSITQNHPYHRA 156 IRISSMTLPHGMVRVMLAEQLYRAWSITQNHPYHRA Sbjct: 121 IRISSMTLPHGMVRVMLAEQLYRAWSITQNHPYHRA 156 >ref|YP_004751703.1| hypothetical protein CFU_1048 [Collimonas fungivorans Ter331] gb|AEK60880.1| hypothetical protein CFU_1048 [Collimonas fungivorans Ter331] Length = 156 Score = 271 bits (693), Expect = 2e-71, Method: Composition-based stats. Identities = 131/155 (84%), Positives = 146/155 (94%) Query: 1 MQLVIAAVGHKMPAWIETGFQEYAKRMPPECRIILKEIKPVERSGSRTAETVMAQEREKI 60 MQL+IAAVGHKMPAWIE+GF EYAKRMPP+CRI+LKEIKPVERSGS+TAET MA ER +I Sbjct: 1 MQLIIAAVGHKMPAWIESGFGEYAKRMPPDCRIVLKEIKPVERSGSKTAETAMALERSRI 60 Query: 61 EAALPKGARVIALDERGRDWTSVQLSQQLEQWQQDGRDVAFVIGGADGLDPGFKAGADTL 120 EA LPKG R++ALDERG+D TSVQLSQQL QWQ+DGRDVAF+IGGADGLDP FKAGAD+L Sbjct: 61 EAVLPKGVRIVALDERGKDLTSVQLSQQLTQWQRDGRDVAFIIGGADGLDPEFKAGADSL 120 Query: 121 IRISSMTLPHGMVRVMLAEQLYRAWSITQNHPYHR 155 +RISS+TLPHGMVRV+LAEQLYRAWSITQNHPYHR Sbjct: 121 LRISSLTLPHGMVRVLLAEQLYRAWSITQNHPYHR 155 >ref|ZP_08275493.1| LSU m3Psi1915 methyltransferase RlmH [Oxalobacteraceae bacterium IMCC9480] gb|EGF31037.1| LSU m3Psi1915 methyltransferase RlmH [Oxalobacteraceae bacterium IMCC9480] Length = 156 Score = 268 bits (684), Expect = 3e-70, Method: Composition-based stats. Identities = 132/155 (85%), Positives = 141/155 (90%) Query: 1 MQLVIAAVGHKMPAWIETGFQEYAKRMPPECRIILKEIKPVERSGSRTAETVMAQEREKI 60 MQL+IAAVGHKMPAWIETGF EYAKRMPPECR+ LKEIKPVERSGS+TAET MA ER +I Sbjct: 1 MQLIIAAVGHKMPAWIETGFGEYAKRMPPECRLHLKEIKPVERSGSKTAETAMALERTRI 60 Query: 61 EAALPKGARVIALDERGRDWTSVQLSQQLEQWQQDGRDVAFVIGGADGLDPGFKAGADTL 120 EA LPKG R+IALDE GRD TSVQLSQQL WQQDGRDVAF+IGGADGLDP FKA AD L Sbjct: 61 EAVLPKGTRIIALDEHGRDLTSVQLSQQLTSWQQDGRDVAFIIGGADGLDPHFKANADML 120 Query: 121 IRISSMTLPHGMVRVMLAEQLYRAWSITQNHPYHR 155 +RISS+TLPHGMVRV+LAEQLYRAWSITQNHPYHR Sbjct: 121 LRISSLTLPHGMVRVVLAEQLYRAWSITQNHPYHR 155 >ref|YP_001098886.1| rRNA large subunit methyltransferase [Herminiimonas arsenicoxydans] sp|A4G2M2|RLMH_HERAR RecName: Full=Ribosomal RNA large subunit methyltransferase H; AltName: Full=23S rRNA m3Psi1915 methyltransferase; AltName: Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH emb|CAL60759.1| putative methyltransferase [Herminiimonas arsenicoxydans] Length = 156 Score = 265 bits (676), Expect = 3e-69, Method: Composition-based stats. Identities = 133/155 (85%), Positives = 140/155 (90%) Query: 1 MQLVIAAVGHKMPAWIETGFQEYAKRMPPECRIILKEIKPVERSGSRTAETVMAQEREKI 60 MQLVIAAVGHKMPAWIE GF EYAKRMPP+CRI LKEIKPVERSGS+TAET MA ER KI Sbjct: 1 MQLVIAAVGHKMPAWIENGFGEYAKRMPPDCRIHLKEIKPVERSGSKTAETAMALERAKI 60 Query: 61 EAALPKGARVIALDERGRDWTSVQLSQQLEQWQQDGRDVAFVIGGADGLDPGFKAGADTL 120 EAA+PKGAR+IALDE G+D TSVQL+Q L QWQQDGRDV FVIGGADGLDP FK AD L Sbjct: 61 EAAVPKGARIIALDEHGKDVTSVQLAQLLTQWQQDGRDVTFVIGGADGLDPDFKKKADML 120 Query: 121 IRISSMTLPHGMVRVMLAEQLYRAWSITQNHPYHR 155 IRISS+TLPHGMVRVMLAEQLYRAWSITQNHPYHR Sbjct: 121 IRISSLTLPHGMVRVMLAEQLYRAWSITQNHPYHR 155 >ref|YP_001352229.1| rRNA large subunit methyltransferase [Janthinobacterium sp. Marseille] sp|A6SVD2|RLMH_JANMA RecName: Full=Ribosomal RNA large subunit methyltransferase H; AltName: Full=23S rRNA m3Psi1915 methyltransferase; AltName: Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH gb|ABR89862.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 156 Score = 260 bits (665), Expect = 5e-68, Method: Composition-based stats. Identities = 131/155 (84%), Positives = 140/155 (90%) Query: 1 MQLVIAAVGHKMPAWIETGFQEYAKRMPPECRIILKEIKPVERSGSRTAETVMAQEREKI 60 MQLVIAAVGHKMPAWIE+GF EYAKRMP +CR+ LKEIKPVERSGS+TAET MA ER KI Sbjct: 1 MQLVIAAVGHKMPAWIESGFGEYAKRMPADCRVHLKEIKPVERSGSKTAETAMALERAKI 60 Query: 61 EAALPKGARVIALDERGRDWTSVQLSQQLEQWQQDGRDVAFVIGGADGLDPGFKAGADTL 120 EAALPKGAR+IALDE G+D TSVQL+Q L QWQQDGRDVAF+IGGADGLD FK AD L Sbjct: 61 EAALPKGARIIALDEHGKDLTSVQLAQLLTQWQQDGRDVAFIIGGADGLDAEFKKNADML 120 Query: 121 IRISSMTLPHGMVRVMLAEQLYRAWSITQNHPYHR 155 IRISSMTLPHGMVRV+LAEQLYRAWSITQNHPYHR Sbjct: 121 IRISSMTLPHGMVRVLLAEQLYRAWSITQNHPYHR 155