BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4418.p (386 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776939.1| branched-chain amino acid ABC transporter pe... 624 e-177 ref|YP_004754303.1| putative LEU/ILE/VAL-binding signal peptide ... 334 2e-89 ref|YP_004751762.1| extracellular ligand-binding receptor [Colli... 309 5e-82 ref|YP_001900666.1| extracellular ligand-binding receptor [Ralst... 304 2e-80 ref|YP_002982689.1| extracellular ligand-binding receptor [Ralst... 303 3e-80 >ref|YP_003776939.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ65031.1| ABC-type branched-chain amino acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 383 Score = 624 bits (1609), Expect = e-177, Method: Composition-based stats. Identities = 330/379 (87%), Positives = 351/379 (92%), Gaps = 3/379 (0%) Query: 11 WCGRL--ALGVACGLHA-AQAAENGVSPQEIVLGQSAPFTGPAAEVGRDFQEGARSYFAQ 67 WC RL LG+A L A AAE+GVS E+VLGQSAPF+GPA+++GRDF GA+SYFA Sbjct: 5 WCHRLRGCLGLAMSLLAVGAAAEDGVSATEVVLGQSAPFSGPASDLGRDFLVGAQSYFAM 64 Query: 68 VNARGGVHGRRVRLLSLDDGYQPERTLANTQQLIWRDKVFALFGFSGTPTVLAALPAIRE 127 VNA+GGVHGRRVRLLSLDDGY+PERT ANTQQLIWRDKVFALFG+SGT T LAALPAIRE Sbjct: 65 VNAKGGVHGRRVRLLSLDDGYEPERTAANTQQLIWRDKVFALFGYSGTATTLAALPAIRE 124 Query: 128 AGIPLIAPHSGASSLREPFNRLIFHVRASYEQETDFLLRQLQGTGRKRVAVFYQNDELGK 187 A +PL AP SGA +LREPFNRLIFHVRASY QETDFLLRQLQGTGR++VAVFYQNDELGK Sbjct: 125 ANVPLFAPVSGALALREPFNRLIFHVRASYAQETDFLLRQLQGTGRRKVAVFYQNDELGK 184 Query: 188 GLLEQLRLRALVYGLTLVGSAAIERNSDAVGGAAQALLKVKPDVVIQVVSYRPAAALIAR 247 +LEQLRLRALVYGLTLVG+AA+ERNSDAV GAAQALLKVKPDVVIQVVSYRPAAALIAR Sbjct: 185 SMLEQLRLRALVYGLTLVGTAAVERNSDAVEGAAQALLKVKPDVVIQVVSYRPAAALIAR 244 Query: 248 MRQAGYLGGFSHYSFVGSLSLSARLKECGIGAEIAQVVPFPNKARLPLVYEYRKAVAQHP 307 MRQAGYLGGFSHYSFVGSLSLSARLKECGIGAEIAQVVPFPNKARLPLVYEYRKAVAQHP Sbjct: 245 MRQAGYLGGFSHYSFVGSLSLSARLKECGIGAEIAQVVPFPNKARLPLVYEYRKAVAQHP 304 Query: 308 GAVDNFLSLEGYIAARTLVEGLRRAGRALTREGLIRALESITPANYDGGGFSLQFGRTDH 367 GAVDNFLSLEGYIAARTLVEGLRRAGRALTREGLIRALE+I+PANYDGGGFS F RTDH Sbjct: 305 GAVDNFLSLEGYIAARTLVEGLRRAGRALTREGLIRALETISPANYDGGGFSQHFSRTDH 364 Query: 368 SGSDFVDLTAIGTGGRFIN 386 SGSDFVDLTAIG+GGRFIN Sbjct: 365 SGSDFVDLTAIGSGGRFIN 383 >ref|YP_004754303.1| putative LEU/ILE/VAL-binding signal peptide protein [Collimonas fungivorans Ter331] gb|AEK63480.1| putative LEU/ILE/VAL-binding signal peptide protein [Collimonas fungivorans Ter331] Length = 424 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 178/372 (47%), Positives = 246/372 (66%), Gaps = 1/372 (0%) Query: 15 LALGVACGLHAAQAAENGVSPQEIVLGQSAPFTGPAAEVGRDFQEGARSYFAQVNARGGV 74 L +G A L +A AE+GV+ Q+I+LGQSA F+GPAA++G GA++YF VN +GGV Sbjct: 54 LVVGAALPL-SASFAESGVTDQKIILGQSAAFSGPAAQLGIQMNAGAKAYFDSVNEQGGV 112 Query: 75 HGRRVRLLSLDDGYQPERTLANTQQLIWRDKVFALFGFSGTPTVLAALPAIREAGIPLIA 134 GR++ ++ DD Y+ + ANT++LI +D VFALFG+ GTPT AALP +AG+P A Sbjct: 113 FGRQIEIIKADDKYEADLAAANTKRLIEKDDVFALFGYVGTPTSNAALPIFTQAGVPFFA 172 Query: 135 PHSGASSLREPFNRLIFHVRASYEQETDFLLRQLQGTGRKRVAVFYQNDELGKGLLEQLR 194 P +GA SLREP NR +F++RASY ET+ L+ +L G K +AVFYQND G+ LE ++ Sbjct: 173 PVTGAQSLREPLNRQVFNIRASYFDETEHLVEKLANVGIKNIAVFYQNDAYGRAGLEGVQ 232 Query: 195 LRALVYGLTLVGSAAIERNSDAVGGAAQALLKVKPDVVIQVVSYRPAAALIARMRQAGYL 254 L LV +A +ERNS V GA +L +P +IQ+ +Y AA I MR+AGY Sbjct: 233 RALKKMNLELVEAATVERNSTDVKGAVSKILPKRPAAIIQISAYASCAAYIKEMRKAGYN 292 Query: 255 GGFSHYSFVGSLSLSARLKECGIGAEIAQVVPFPNKARLPLVYEYRKAVAQHPGAVDNFL 314 G F + SFVGS +L+ L + G G I+QVVPFP + P++ EY K + + NF Sbjct: 293 GQFYNVSFVGSQALADALGKDGEGVVISQVVPFPWSSSTPVLAEYTKLMQKAGVKEPNFS 352 Query: 315 SLEGYIAARTLVEGLRRAGRALTREGLIRALESITPANYDGGGFSLQFGRTDHSGSDFVD 374 SLEG+IAA+ VEGL+RAG+ LTR L++ALE+I NY+GGGF + F ++HSGS FV+ Sbjct: 353 SLEGFIAAKVFVEGLKRAGKDLTRAKLVKALETINMKNYNGGGFDVNFSGSNHSGSKFVE 412 Query: 375 LTAIGTGGRFIN 386 +T I +F+N Sbjct: 413 MTMITKDKKFLN 424 >ref|YP_004751762.1| extracellular ligand-binding receptor [Collimonas fungivorans Ter331] gb|AEK60939.1| Extracellular ligand-binding receptor [Collimonas fungivorans Ter331] Length = 376 Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats. Identities = 167/358 (46%), Positives = 233/358 (65%), Gaps = 2/358 (0%) Query: 29 AENGVSPQEIVLGQSAPFTGPAAEVGRDFQEGARSYFAQVNARGGVHGRRVRLLSLDDGY 88 AE+GV+ I LGQSA F+GPA E+G+ +GA++YF QVNA GGV GR++ L +LDDGY Sbjct: 21 AESGVTATTITLGQSAAFSGPAKELGKGMHDGAQAYFDQVNASGGVFGRKIILKTLDDGY 80 Query: 89 QPERTLANTQQLIWRDKVFALFGFSGTPTVLAALPAIREAGIPLIAPHSGASSLREPFNR 148 +P+R ANT+Q I +D V ALFG+ GTPT A++P + +A +P AP +GA SLREPFNR Sbjct: 81 EPDRAAANTRQFIEQDDVLALFGYVGTPTSNASIPILTKAKVPFFAPFTGAQSLREPFNR 140 Query: 149 LIFHVRASYEQETDFLLRQLQGTGRKRVAVFYQNDELGKGLLEQLRLRALVYGLTLVGSA 208 IF++RASY ET+ +++Q+ K++AVFYQND GK LE + G+ + G Sbjct: 141 NIFNIRASYFAETEKIVQQITTLSLKKIAVFYQNDAYGKAGLEGVTRALKKRGIEVAGLG 200 Query: 209 AIERNSDAVGGAAQALLKVKPDVVIQVVSYRPAAALIARMRQAGYLGGFSHYSFVGSLSL 268 +ERNS V A + + +P VI V +Y +AA I M AG F + SFVGS L Sbjct: 201 TVERNSVDVSAAVAKIRQSQPQTVIMVSAYNSSAAFIKAMIAAGSPPSFWNISFVGSQQL 260 Query: 269 SARLKECGIGAEIAQVVPFPNKARLPLVYEYRKAVAQHPGAVDNFLSLEGYIAARTLVEG 328 L + G +IAQV+P P +V EYRK Q +++S+EG+IAA+ LVEG Sbjct: 261 VNALGKDASGVQIAQVMPAPWDEVNGIVKEYRKYYLQDGKREWDYVSMEGFIAAKVLVEG 320 Query: 329 LRRAGRALTREGLIRALESITPANYDGGGFSLQFGRTDHSGSDFVDLTAIGTGGRFIN 386 L+RAG +L+RE L++ALE+I +YD GG+ + F + H+GS+FVDLT + GRF++ Sbjct: 321 LKRAGSSLSRESLVKALETIN--HYDAGGYFVTFSPSSHNGSEFVDLTMVAKSGRFLH 376 >ref|YP_001900666.1| extracellular ligand-binding receptor [Ralstonia pickettii 12J] gb|ACD28234.1| Extracellular ligand-binding receptor [Ralstonia pickettii 12J] Length = 385 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 171/373 (45%), Positives = 244/373 (65%), Gaps = 10/373 (2%) Query: 17 LGVACGLHAAQAAENGVSPQEIVLGQSAPFTGPAAEVGRDFQEGARSYFAQVNARGGVHG 76 +G+A G AE GV+ I++GQSAP +GPAA++G+ GA+ YF VNA GG++G Sbjct: 18 VGIASG---GAHAETGVTNDAIIVGQSAPMSGPAAKLGQQMNRGAQLYFNAVNAAGGING 74 Query: 77 RRVRLLSLDDGYQPERTLANTQQLIWRDKVFALFGFSGTPTVLAALPAIREAGIPLIAPH 136 R++ L LDD Y+P+ T NT+ LI KVFALFG+ GTPT LAAL AG+P AP+ Sbjct: 75 RKIELKVLDDFYEPDATARNTKTLIEDTKVFALFGYVGTPTSLAALKIANPAGVPFFAPY 134 Query: 137 SGASSLREPFNRLIFHVRASYEQETDFLLRQLQGTGRKRVAVFYQNDELGKGLLEQLRLR 196 SGAS+LREPF R +FHVRASY ET +++Q+ TG KR+AV Y +D GK L+ ++ R Sbjct: 135 SGASALREPFARNVFHVRASYNDETAAIVQQIHTTGLKRIAVIYNDDAYGKAGLDGVQ-R 193 Query: 197 ALVY----GLTLVGSAAIERNSDAVGGAAQALLKVKPDVVIQVVSYRPAAALIARMRQAG 252 AL G++LV A++ RN+ V A +L+ KPDVV+ + +Y+ AAL+ ++ G Sbjct: 194 ALKLPANKGVSLVAQASVVRNTTDVKSAITTVLEQKPDVVVVISAYQTVAALVKGAQEQG 253 Query: 253 YLGGFSHYSFVGSLSLSARLKECGIGAEIAQVVPFPNKARLPLVYEYRKAVAQHPGAVDN 312 Y G F + SFVG+ +L+ L + G G I+QV+P+P P+V +Y+K + + Sbjct: 254 YAGQFYNVSFVGTKALANALGKAGGGVIISQVMPYPYSGASPVVRDYQKLLKSDGITDFD 313 Query: 313 FLSLEGYIAARTLVEGLRRAGRALTREGLIRALESITPANYDGGGFSLQFGRTDHSGSDF 372 + S+EGY+AAR VEGL+RAGR LTRE + ALE++ NYD GGF++ F ++H GS F Sbjct: 314 YGSIEGYVAARVFVEGLKRAGRDLTREKFVGALETM--GNYDVGGFNVNFSPSNHVGSKF 371 Query: 373 VDLTAIGTGGRFI 385 V++T I + G+ I Sbjct: 372 VEMTIINSNGQVI 384 >ref|YP_002982689.1| extracellular ligand-binding receptor [Ralstonia pickettii 12D] ref|ZP_07677719.1| extracellular ligand-binding receptor [Ralstonia sp. 5_7_47FAA] gb|ACS64017.1| Extracellular ligand-binding receptor [Ralstonia pickettii 12D] gb|EFP63786.1| extracellular ligand-binding receptor [Ralstonia sp. 5_7_47FAA] Length = 385 Score = 303 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 171/373 (45%), Positives = 244/373 (65%), Gaps = 10/373 (2%) Query: 17 LGVACGLHAAQAAENGVSPQEIVLGQSAPFTGPAAEVGRDFQEGARSYFAQVNARGGVHG 76 +G+A G AE GV+ I++GQSAP +GPAA++G+ GA+ YF VNA GG++G Sbjct: 18 VGIASG---GAHAETGVTNDAIIVGQSAPMSGPAAQLGQQMNRGAQLYFNAVNAAGGING 74 Query: 77 RRVRLLSLDDGYQPERTLANTQQLIWRDKVFALFGFSGTPTVLAALPAIREAGIPLIAPH 136 R++ L LDD Y+P+ T NT+ LI KVFALFG+ GTPT LAAL AG+P AP+ Sbjct: 75 RKIELKVLDDFYEPDATARNTKTLIEDTKVFALFGYVGTPTSLAALKIANPAGVPFFAPY 134 Query: 137 SGASSLREPFNRLIFHVRASYEQETDFLLRQLQGTGRKRVAVFYQNDELGKGLLEQLRLR 196 SGAS+LREPF R +FHVRASY ET +++Q+ TG KR+AV Y +D GK L+ ++ R Sbjct: 135 SGASALREPFARNVFHVRASYNDETAAIVQQIHTTGLKRIAVIYNDDAYGKAGLDGVQ-R 193 Query: 197 ALVY----GLTLVGSAAIERNSDAVGGAAQALLKVKPDVVIQVVSYRPAAALIARMRQAG 252 AL G++LV A++ RN+ V A +L+ KPDVV+ + +Y+ AAL+ ++ G Sbjct: 194 ALKLPANKGVSLVAQASVVRNTTDVKSAITTVLEQKPDVVVVISAYQTVAALVKGAQEQG 253 Query: 253 YLGGFSHYSFVGSLSLSARLKECGIGAEIAQVVPFPNKARLPLVYEYRKAVAQHPGAVDN 312 Y G F + SFVG+ +L+ L + G G I+QV+P+P P+V +Y+K + + Sbjct: 254 YAGQFYNVSFVGTKALANALGKAGGGVIISQVMPYPYSGASPVVRDYQKLLKSDGITDFD 313 Query: 313 FLSLEGYIAARTLVEGLRRAGRALTREGLIRALESITPANYDGGGFSLQFGRTDHSGSDF 372 + S+EGY+AAR VEGL+RAGR LTRE + ALE++ NYD GGF++ F ++H GS F Sbjct: 314 YGSIEGYVAARVFVEGLKRAGRDLTREKFVGALETM--GNYDVGGFNVNFSPSNHVGSKF 371 Query: 373 VDLTAIGTGGRFI 385 V++T I + G+ I Sbjct: 372 VEMTIINSNGQVI 384