BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4413.p (518 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776935.1| response regulator containing a CheY-like re... 693 0.0 ref|YP_004752514.1| putative GGDEF domain-containing protein [Co... 405 e-110 ref|YP_002947547.1| diguanylate cyclase [Variovorax paradoxus S1... 396 e-108 ref|YP_261798.1| diguanylate cyclase (GGDEF) domain-containing p... 379 e-102 ref|YP_001100015.1| GGDEF domain-containing protein [Herminiimon... 374 e-101 >ref|YP_003776935.1| response regulator containing a CheY-like receiver and a GGDEF domains protein [Herbaspirillum seropedicae SmR1] gb|ADJ65027.1| response regulator containing a CheY-like receiver and a GGDEF domains protein [Herbaspirillum seropedicae SmR1] Length = 525 Score = 693 bits (1788), Expect = 0.0, Method: Composition-based stats. Identities = 368/517 (71%), Positives = 422/517 (81%) Query: 1 MRPMLAKAGRVTRHSVARRARLFVALICVAIAAGHVWQSLAARTVQLDNTRTYSGNIARA 60 M P+LAKAG RHSVARRARLFV LIC AIA GH+WQS+ AR VQL+N R+YSGN+A+A Sbjct: 1 MHPLLAKAGSHARHSVARRARLFVVLICAAIAGGHLWQSMTARGVQLENNRSYSGNVAKA 60 Query: 61 LARHAYDVFQATHGALINISDRIDEAGTTHAQLHTMSPVLRRLASEMPQLDGLYIFDEHG 120 LARHAYDV QAT G L+++SDRID G HA+L + P+LRRL+SEMPQLDGLY+FDEHG Sbjct: 61 LARHAYDVLQATDGLLLDMSDRIDSVGIAHARLVDLMPMLRRLSSEMPQLDGLYVFDEHG 120 Query: 121 NRVASSSPPRASDANNSDRAYFIYHRDHDDPEPHIHPTLLSRSTDQWIIPMSRRLNHPDG 180 R+ +SS P + ANNSDR YFI+HRDHDD PH+ LLSRST +WIIPMSRRLNHPDG Sbjct: 121 KRLLTSSAPPLAPANNSDRDYFIWHRDHDDVGPHVGKALLSRSTGRWIIPMSRRLNHPDG 180 Query: 181 RFAGLLLATLRLDHFNALYQTVEIGRDSSILLLLRPGKVLTRQPFDPAFINRDLSLDPVI 240 FAG+LLATL ++HFN LY+TVEIG+ SI LLLR G +LTR PFDP +INRD S + Sbjct: 181 SFAGVLLATLDINHFNQLYRTVEIGKGGSIALLLRDGTLLTRMPFDPGYINRDFSQGRLF 240 Query: 241 GEALASPTSGHVLLHSPLDDIDRYVSYQPVQGFPLIVTVTTSRDEALAPWRQQTIVYGAA 300 E L G++ + SPLD R++SYQ V +PL++ VT +R+EALA W+QQT VYGAA Sbjct: 241 LEGLPHSPFGYLEVVSPLDARQRFLSYQAVDKYPLVLVVTLAREEALADWKQQTFVYGAA 300 Query: 301 VLLLLIIIGLFGWRLIGQIELRLVAEDRALQVMGELHQANQRLEQLAHQDGLTGLANRRH 360 VLLLL IIG+FGWRL+GQIELRL AEDRALQ MGEL AN RLE LAHQDGLTGLANRRH Sbjct: 301 VLLLLAIIGVFGWRLVGQIELRLRAEDRALQAMGELQMANHRLEMLAHQDGLTGLANRRH 360 Query: 361 LDTVLAAEFRRAARSKSALSLIMIDVDFFKQYNDLYGHQAGDECLRRIAAVLRERQRRPG 420 LDT+L EF+RA RS +AL+LIMIDVDFFKQYNDLYGHQAGDECLRR+A VL+ERQRRPG Sbjct: 361 LDTMLETEFKRAERSGAALALIMIDVDFFKQYNDLYGHQAGDECLRRVAGVLKERQRRPG 420 Query: 421 DLAARYGGEEMLMLLPDTDAAGAVQVAEKIRAGIQALDLPHRGNPRGVVTASAGVCAMEL 480 DLAARYGGEEM MLLP TDA GA VAEK+RAGIQAL+LPHRGNP GVVT S GVCA+EL Sbjct: 421 DLAARYGGEEMAMLLPGTDAEGACAVAEKLRAGIQALELPHRGNPVGVVTVSVGVCALEL 480 Query: 481 LPAGERTVEDLLGRADAALYEAKHGGRNQVRLAQAEK 517 LP+ R+V+ LLG ADAALYEAKH GRNQVRLA K Sbjct: 481 LPSAARSVQALLGAADAALYEAKHEGRNQVRLAAPMK 517 >ref|YP_004752514.1| putative GGDEF domain-containing protein [Collimonas fungivorans Ter331] gb|AEK61691.1| putative GGDEF domain protein [Collimonas fungivorans Ter331] Length = 521 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 226/492 (45%), Positives = 315/492 (64%), Gaps = 3/492 (0%) Query: 20 ARLFVALICVAIAAGHVWQSLAARTVQLDNTRTYSGNIARALARHAYDVFQATHGALINI 79 A +FV L+CV++ + VW+S AR ++L T + N+ARAL++HA D + L+ + Sbjct: 25 ATVFVVLVCVSLMSVEVWRSWNARNIELHETEIATSNLARALSQHADDTIKEADTVLVGL 84 Query: 80 SDRIDEAGTTHAQLHTMSPVLRRLASEMPQLDGLYIFDEHGNRVASSSPPRASDANNSDR 139 +R++ GT A L + +L +E+PQL+ L I+DE G +A++ NNSDR Sbjct: 85 VERLEVDGTGSASLERLHALLIHHIAELPQLNDLSIYDETGLWLANARTGPVPLVNNSDR 144 Query: 140 AYFIYHRDHDDPEPHIHPTLLSRSTDQWIIPMSRRLNHPDGRFAGLLLATLRLDHFNALY 199 YF YHR H P+I P + SRST WI+ +SRR NH DG FAGL+L T+ +D+F Y Sbjct: 145 QYFRYHRSHPGRGPYIGPPVRSRSTGAWIVTVSRRYNHADGSFAGLVLGTINIDYFKKYY 204 Query: 200 QTVEIGRDSSILLLLRPGKVLTRQPFDPAFINRDLSLDPVIGEALASPTSGHVLLHSPLD 259 + +IGR SI L L G +L R+P I ++LS P+ + + G ++ S D Sbjct: 205 DSFDIGRAGSIFLSLNDGTMLVRRPMMDDTIGKNLSNYPIYRDYASRSAVGTAIMKSDQD 264 Query: 260 DIDRYVSYQPVQGFPLIVTVTTSRDEALAPWRQQTIVYGAAVLLLLIIIGLFGWRLIGQI 319 I+R ++Y+ +Q +PL VTV S++E LA WR T ++ +LL + +GL GWRLI QI Sbjct: 265 GIERLIAYRHLQQYPLFVTVARSKNEVLAEWRADTYLHLFGAMLLTLALGLLGWRLIHQI 324 Query: 320 ELRLVAEDRALQVMGELHQANQRLEQLAHQDGLTGLANRRHLDTVLAAEFRRAARSKSAL 379 LRL+AE+ L V L N+ LEQLA QD LTGLANRR D L EF RA R++++L Sbjct: 325 RLRLLAENDLLCVQESLRMLNRHLEQLALQDSLTGLANRRQFDNALRDEFSRAMRTENSL 384 Query: 380 SLIMIDVDFFKQYNDLYGHQAGDECLRRIAAVLRERQRRPGDLAARYGGEEMLMLLPDTD 439 +L+MIDVD+FKQYND+YGH AGDECLR+I+ +++ + RPGDLAARYGGEE+++LLPDT+ Sbjct: 385 ALVMIDVDYFKQYNDIYGHLAGDECLRQISEIVKASKNRPGDLAARYGGEELVVLLPDTN 444 Query: 440 AAGAVQVAEKIRAGIQALDLPHRGNPRGVVTASAGVCAMELLPAGERTVE-DLLGRADAA 498 AGAV VAEKIR I L + H + G+VT SAGV A +P + + +L+ AD A Sbjct: 445 LAGAVAVAEKIRVAICNLHIEHPSSTFGLVTVSAGVDA--FVPVRDDNIPFELIQAADRA 502 Query: 499 LYEAKHGGRNQV 510 LY AK GRN+V Sbjct: 503 LYAAKSAGRNRV 514 >ref|YP_002947547.1| diguanylate cyclase [Variovorax paradoxus S110] gb|ACS22281.1| diguanylate cyclase [Variovorax paradoxus S110] Length = 512 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 208/497 (41%), Positives = 308/497 (61%), Gaps = 1/497 (0%) Query: 15 SVARRARLFVALICVAIAAGHVWQSLAARTVQLDNTRTYSGNIARALARHAYDVFQATHG 74 S+ R FVA++C+++ A W S ART QL + N++RA+A+ A D + Sbjct: 6 SITARTMAFVAVVCLSLLAIDFWNSWEARTDQLQQMNVATSNLSRAMAQQADDTIKKADT 65 Query: 75 ALINISDRIDEAGTTHAQLHTMSPVLRRLASEMPQLDGLYIFDEHGNRVASSSPPRASDA 134 L+ + +R++ GT + + + +L +E+PQLDGL+I+D+ GN +A+S P R + Sbjct: 66 VLVGMVERVEHDGTDPSDVARLRQLLALRVAELPQLDGLHIYDQDGNWIANSRPTRPENL 125 Query: 135 NNSDRAYFIYHRDHDDPEPHIHPTLLSRSTDQWIIPMSRRLNHPDGRFAGLLLATLRLDH 194 NN+DR YF +HR H + PHI + SR++ + ++P+SRR+NH DG FAG+ LAT+ +D Sbjct: 126 NNADREYFAFHRTHAERGPHIGIPVQSRTSGRLLVPVSRRINHADGSFAGVALATIHVDF 185 Query: 195 FNALYQTVEIGRDSSILLLLRPGKVLTRQPFDPAFINRDLSLDPVIGEALASPTSGHVLL 254 F+ Y +++IG+ ++ L+L G ++TR+P+ P + R++ + A G + Sbjct: 186 FSRFYDSLDIGQAGAVALVLENGTMMTRRPYSPDMVGRNMLETQLFRSYAAHGPVGTAYI 245 Query: 255 HSPLDDIDRYVSYQPVQGFPLIVTVTTSRDEALAPWRQQTIVYGAAVLLLLIIIGLFGWR 314 S D + R S++ + +PL V+ S+DE LA W + T+ + V+LL +I+G GWR Sbjct: 246 KSAQDGVTRLNSFRRLDNYPLFVSAALSKDEILANWWRDTLWHSGGVVLLSLIVGFIGWR 305 Query: 315 LIGQIELRLVAEDRALQVMGELHQANQRLEQLAHQDGLTGLANRRHLDTVLAAEFRRAAR 374 L+ Q +L+ E Q L N+ L LA +DGLTGLANRR D L +E+ RAAR Sbjct: 306 LVRQFQLQTRTEAELRQARDALETLNKTLNTLAMEDGLTGLANRRQFDVALDSEYSRAAR 365 Query: 375 SKSALSLIMIDVDFFKQYNDLYGHQAGDECLRRIA-AVLRERQRRPGDLAARYGGEEMLM 433 + S L+LIM+DVD FKQYND+YGH AGDECL+ I + R RRPGDLAARYGGEE+ + Sbjct: 366 NASTLALIMMDVDCFKQYNDIYGHAAGDECLQTIGRTIARVASRRPGDLAARYGGEELAV 425 Query: 434 LLPDTDAAGAVQVAEKIRAGIQALDLPHRGNPRGVVTASAGVCAMELLPAGERTVEDLLG 493 LLP+TD AGAV +AE+IR+ ++ L + H G G VT SAGV A+ ++L+ Sbjct: 426 LLPNTDVAGAVMLAERIRSAVRELKIEHAGTADGFVTLSAGVDALSPQAGIGGQPKELIR 485 Query: 494 RADAALYEAKHGGRNQV 510 AD ALY AK GGRN+V Sbjct: 486 SADKALYAAKSGGRNRV 502 >ref|YP_261798.1| diguanylate cyclase (GGDEF) domain-containing protein [Pseudomonas fluorescens Pf-5] gb|AAY93948.1| diguanylate cyclase (GGDEF) domain protein [Pseudomonas fluorescens Pf-5] Length = 527 Score = 379 bits (972), Expect = e-102, Method: Composition-based stats. Identities = 208/503 (41%), Positives = 306/503 (60%), Gaps = 3/503 (0%) Query: 11 VTRHSVARRARLFVALICVAIAAGHVWQSLAARTVQLDNTRTYSGNIARALARHAYDVFQ 70 V H V R F+ +C+ + +WQ A+R +L + N+A+ L+ A+D + Sbjct: 27 VAEHKVKTAVR-FLLTVCLILILVDLWQGWASRQYRLQDKEVAMANLAQTLSSQAHDSIK 85 Query: 71 ATHGALINISDRIDEAGTTHAQLHTMSPVLRRLASEMPQLDGLYIFDEHGNRVASSSPPR 130 L ++ DRI+ G QLH + +L +E+ QL GL+I+D+ G + +S+ Sbjct: 86 QADTVLFSLVDRIETEGMDADQLHLLKRLLSAQRNELSQLHGLFIYDQDGAWIVASNGIL 145 Query: 131 ASDANNSDRAYFIYHRDHDDPEPHIHPTLLSRSTDQWIIPMSRRLNHPDGRFAGLLLATL 190 +ANNSD YFIYHRD D PH+ P++ SRST +W++P+SRR+N+PDG FAG+ LAT+ Sbjct: 146 PPNANNSDSEYFIYHRDRPDRGPHVGPSIKSRSTGEWVLPVSRRINNPDGSFAGVALATI 205 Query: 191 RLDHFNALYQTVEIGRDSSILLLLRPGKVLTRQPFDPAFINRDLSLDPVIGEALASPTSG 250 LDHF LY +++IG + I L+ K++ R+PF+ A I +++ P+ + L G Sbjct: 206 YLDHFLKLYNSIDIGNNGVINLISSEAKIVLRRPFNEAVIGTNVAEGPLFTQLLPKGPFG 265 Query: 251 HVLLHSPLDDIDRYVSYQPVQGFPLIVTVTTSRDEALAPWRQQTIVYGAAVLLLLIIIGL 310 + S LD ++R V Y+ V +PLIV +++E LA WRQ+T++ A V LL+ ++G Sbjct: 266 TATVTSYLDGVERVVGYRRVNDYPLIVFSAVNKEEVLASWRQETVMSTAIVFLLMTVLGG 325 Query: 311 FGWRLIGQIELRLVAEDRALQVMGELHQANQRLEQLAHQDGLTGLANRRHLDTVLAAEFR 370 G+R I ++ + ++ L +L + N+ LE LA +D LTGLANRR D E Sbjct: 326 IGYRFIRLMKKQGRIQNELLGAQDKLMEVNRTLELLALEDALTGLANRRQFDLFTQTEMG 385 Query: 371 RAARSKSALSLIMIDVDFFKQYNDLYGHQAGDECLRRIAAVLRERQRRPGDLAARYGGEE 430 RA R + L+L+MIDVD FK++ND YGH GDECLRRI+A++RE RRPGDLAAR+GGEE Sbjct: 386 RAKRGQRTLALLMIDVDHFKRFNDRYGHLVGDECLRRISAIIRENIRRPGDLAARFGGEE 445 Query: 431 MLMLLPDTDAAGAVQVAEKIRAGIQALDLPHRGNPRGVVTASAGVCAMELLPAGERTVED 490 ++LP TD GA VAEKIR + ++ H+ + +VT S GV A P+ E T++ Sbjct: 446 FAVVLPATDYVGAFIVAEKIRKAVLRAEIEHKDSGIELVTVSIGVGACS--PSVEDTLDG 503 Query: 491 LLGRADAALYEAKHGGRNQVRLA 513 L+G AD ALY AK GRN +A Sbjct: 504 LIGAADEALYVAKTSGRNMSVIA 526 >ref|YP_001100015.1| GGDEF domain-containing protein [Herminiimonas arsenicoxydans] emb|CAL61890.1| conserved hypothetical protein, GGDEF domain [Herminiimonas arsenicoxydans] Length = 519 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 211/508 (41%), Positives = 310/508 (61%), Gaps = 6/508 (1%) Query: 3 PMLAKAGRVTRHSVARRARLFVALICVAIAAGHVWQSLAARTVQLDNTRTYSGNIARALA 62 P + K+ R++ + +FV ++ V I A + W AR ++ T T + N+A+ALA Sbjct: 6 PFIRKSKRLSLQATLTVFIVFVTVLLVCILALNAWH---ARAEKIRETETATSNMAKALA 62 Query: 63 RHAYDVFQATHGALINISDRIDEAGTTHAQLHTMSPVLRRLASEMPQLDGLYIFDEHGNR 122 +HA D L+++ + ++ QL M+ LR+ +++P L GL+++DEHG Sbjct: 63 QHAEDTVGGIDNLLVSMEEMLERDSWNPLQLERMNQFLRQRVTDLPLLHGLFVYDEHGQW 122 Query: 123 VASSSPPRASDANNSDRAYFIYHRDHDDPEPHIHPTLLSRSTDQWIIPMSRRLNHPDGRF 182 VA+S +D NN+DR YFI+HR H D PH+ P + SRST WII +SRRL H DG F Sbjct: 123 VANSQETLRTDLNNADREYFIFHRTHTDSGPHLGPPIRSRSTGDWIITVSRRLEHADGNF 182 Query: 183 AGLLLATLRLDHFNALYQTVEIGRDSSILLLLRPGKVLTRQPFDPAFINRDLSLDPVIGE 242 AG++LAT+ + +F+A Y+ +IG+ +I+L G +L R+PFD A I D+S PV Sbjct: 183 AGVVLATINMQYFSAYYKDFDIGKAGAIVLTTDSGTLLVRRPFDEAVIGGDISNGPVYQF 242 Query: 243 ALASPTSGHVLLHSPLDDIDRYVSYQPVQGFPLIVTVTTSRDEALAPWRQQTIVYGAAVL 302 +SG +L + +D +R SY+ + +PL++ V S DE L WR T+ + Sbjct: 243 YKRQGSSGTAILTANIDRTERIYSYRHLDRYPLLIAVAQSTDEVLESWRNSTMRFAFFSA 302 Query: 303 LLLIIIGLFGWRLIGQIELRLVAEDRALQVMGELHQANQRLEQLAHQDGLTGLANRRHLD 362 ++L+++ L G RL+ QI +R A+ +L ++N L LA D LTGLANRR D Sbjct: 303 MVLLLLWLLGARLVHQITVRERAQSELRTARDDLERSNGELAALALLDSLTGLANRRRFD 362 Query: 363 TVLAAEFRRAARSKSALSLIMIDVDFFKQYNDLYGHQAGDECLRRIAAVLRERQRRPGDL 422 L EF RA R++++L+LIM+DVD FK+YND YGH GDECL+ I+ +L+ R GDL Sbjct: 363 AALDDEFARAMRNQTSLALIMLDVDHFKKYNDRYGHPQGDECLKEISKILKTATARTGDL 422 Query: 423 AARYGGEEMLMLLPDTDAAGAVQVAEKIRAGIQALDLPHRGNPRGVVTASAGVCAMELLP 482 ARYGGEE ++LLP TD AGA VAE++R IQAL++ H P G+VTAS G+ A L+P Sbjct: 423 VARYGGEEFVILLPGTDRAGAAAVAERVRLAIQALNMEHAETPDGIVTASLGIAA--LIP 480 Query: 483 AGER-TVEDLLGRADAALYEAKHGGRNQ 509 ++ + + L+ AD ALY+AK GRNQ Sbjct: 481 QRQQNSPQQLVHAADQALYKAKEDGRNQ 508