BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4412.p (301 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776934.1| chloramphenicol-sensitive protein [Herbaspir... 339 4e-91 ref|YP_004753277.1| chloramphenicol-sensitive protein [Collimona... 267 2e-69 ref|YP_001890702.1| RarD protein, DMT superfamily transporter [B... 258 7e-67 ref|YP_001116161.1| transporter DMT superfamily protein [Burkhol... 248 1e-63 ref|ZP_06841485.1| RarD protein, DMT superfamily transporter [Bu... 243 3e-62 >ref|YP_003776934.1| chloramphenicol-sensitive protein [Herbaspirillum seropedicae SmR1] gb|ADJ65026.1| chloramphenicol-sensitive protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 339 bits (869), Expect = 4e-91, Method: Composition-based stats. Identities = 229/294 (77%), Positives = 264/294 (89%) Query: 1 MNPQLVGRGIGLSVLASSLFAFLSGYTRLLAPLDGTDIFAWRILITLLCVLGLLAWRGEL 60 M+ +GRG+GLSVLAS+LFA LSGYTRLLAPLDG DIF WRIL T + VL L+AWRG+L Sbjct: 4 MHHHEIGRGVGLSVLASALFALLSGYTRLLAPLDGNDIFGWRILATAVAVLALIAWRGQL 63 Query: 61 SRLRSAMAELLASPGRIALLVLMAALLALQQWLFLWGSVNGRALEVSLGYFMLPLSMVLV 120 SRLR+A AELL SPGR LL+LMAALL QQWLFLWGSVNG+ALEVSLGYF+LPLSMVLV Sbjct: 64 SRLRAACAELLGSPGRCLLLLLMAALLGFQQWLFLWGSVNGQALEVSLGYFLLPLSMVLV 123 Query: 121 GRFHYGEKMDLLQRLAVLCACVGVAHELWMTRAFSWPTLAVALGYPPYFMLRRRIRLDSM 180 GR YGE+++LLQRLAVL AC+GVAHE+WMTR+FSWPTLAVALGYPPYF+LRRR++LDS+ Sbjct: 124 GRLLYGERLNLLQRLAVLLACIGVAHEIWMTRSFSWPTLAVALGYPPYFILRRRLQLDSL 183 Query: 181 LIFAVELMVLALPSLLALVLSPATGPTLRTPAMWLLLPGLGILSMIALASYLRAGKLLPM 240 +IFAVEL++LALP+L+A+ L TLRTPAM LLLPGLG+LSM+ALA YLRAGKLLPM Sbjct: 184 MIFAVELLILALPALIAVALGDTLATTLRTPAMLLLLPGLGLLSMVALACYLRAGKLLPM 243 Query: 241 GLFGILGYVEPVLLVLVAMAVLGESLQLAQLGTYVPIWLSVLLTALHSVKLMRR 294 GLFG+LGYVEP+LLVLVA+AVLGESL LAQLGTYVPIWL+VLLTA+HS KLMR+ Sbjct: 244 GLFGVLGYVEPILLVLVAIAVLGESLPLAQLGTYVPIWLAVLLTAMHSAKLMRQ 297 >ref|YP_004753277.1| chloramphenicol-sensitive protein [Collimonas fungivorans Ter331] gb|AEK62454.1| Chloramphenicol-sensitive protein [Collimonas fungivorans Ter331] Length = 304 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 171/295 (57%), Positives = 217/295 (73%), Gaps = 1/295 (0%) Query: 1 MNPQLVGRGIGLSVLASSLFAFLSGYTRLLAPLDGTDIFAWRILITLLCVLGLLAWRGEL 60 MN +GRGI LS+ AS LFA +SGYTRLLAPLDG DIFAWR++ TL L LL R L Sbjct: 1 MNQHEIGRGISLSIGASMLFALMSGYTRLLAPLDGLDIFAWRVVWTLPAALALLVLRQRL 60 Query: 61 SRLRSAMAELLASPGRIALLVLMAALLALQQWLFLWGSVNGRALEVSLGYFMLPLSMVLV 120 + R+ + L P L+++ ALL +Q W+FLW ++GRALEVSLGYF+LPL+MVLV Sbjct: 61 PQARALLCRLAREPLTCVALLVVVALLGVQLWIFLWAPLHGRALEVSLGYFLLPLTMVLV 120 Query: 121 GRFHYGEKMDLLQRLAVLCACVGVAHELWMTRAFSWPTLAVALGYPPYFMLRRRIRLDSM 180 GRF+Y E++DL Q LAV CA +GV HELW+TR+F+WPTL VALGYPPYF+LRR+I D + Sbjct: 121 GRFYYHERLDLFQWLAVACAVIGVLHELWLTRSFAWPTLVVALGYPPYFILRRKINADPV 180 Query: 181 LIFAVELMVLALPSLLALVLSPATGPTLRTPAMWL-LLPGLGILSMIALASYLRAGKLLP 239 + FA+E+ +L +++ L + P MWL LLPGLG+LS +AL +Y A +LLP Sbjct: 181 VAFALEMALLLPVAVVMLYARDSWSVVAHRPDMWLFLLPGLGMLSTVALGAYQGASRLLP 240 Query: 240 MGLFGILGYVEPVLLVLVAMAVLGESLQLAQLGTYVPIWLSVLLTALHSVKLMRR 294 M LFGILGYVEPVLLV VA+ LGES+ QL TY+PIW +VLLTALHSV+L+R+ Sbjct: 241 MALFGILGYVEPVLLVGVAIVFLGESMAPGQLATYIPIWCAVLLTALHSVRLLRK 295 >ref|YP_001890702.1| RarD protein, DMT superfamily transporter [Burkholderia phytofirmans PsJN] gb|ACD21331.1| RarD protein, DMT superfamily transporter [Burkholderia phytofirmans PsJN] Length = 298 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 170/295 (57%), Positives = 216/295 (73%), Gaps = 3/295 (1%) Query: 1 MNPQLVGRGIGLSVLASSLFAFLSGYTRLLAPLDGTDIFAWRILITLLCVLGLLAWRGEL 60 MN + RGI LSV A++ FA LS Y LLAPL G DIFAWR++ T+ L L+A R L Sbjct: 1 MNQYDLRRGIALSVCATTTFALLSAYATLLAPLSGLDIFAWRVIWTVPGALLLVALRKRL 60 Query: 61 SRLRSAMAELLASPGRIALLVLMAALLALQQWLFLWGSVNGRALEVSLGYFMLPLSMVLV 120 LR + ++ P +++ AALL +Q W+FLW ++GR LEVSLGYF++PL+MVLV Sbjct: 61 PILRRLLYRMVTEPKLGMAMIVSAALLGVQLWVFLWAPLHGRMLEVSLGYFLMPLTMVLV 120 Query: 121 GRFHYGEKMDLLQRLAVLCACVGVAHELWMTRAFSWPTLAVALGYPPYFMLRRRIRLDSM 180 GRF+Y E++D LQ LAV CA GV HELW+T AFSWPTL V+LGYPPYF+LRR+I DS+ Sbjct: 121 GRFYYHERLDGLQWLAVACAATGVGHELWVTGAFSWPTLLVSLGYPPYFVLRRKINHDSL 180 Query: 181 LIFAVELMVLALPSLLALVLSPATGPTL--RTPAMWLLLPGLGILSMIALASYLRAGKLL 238 +F VE M L LP +ALV + + + WLLLPGLG LS IALASYL+A +LL Sbjct: 181 AMFTVE-MALLLPPAIALVFNGGSLAMIAGHPGRWWLLLPGLGALSTIALASYLKASRLL 239 Query: 239 PMGLFGILGYVEPVLLVLVAMAVLGESLQLAQLGTYVPIWLSVLLTALHSVKLMR 293 P+ LFGILGYVEPVLLVL+++ VLGE+L ++QL TYVPIW++V LTALHSV+L+R Sbjct: 240 PVALFGILGYVEPVLLVLISITVLGETLSVSQLATYVPIWIAVALTALHSVRLVR 294 >ref|YP_001116161.1| transporter DMT superfamily protein [Burkholderia vietnamiensis G4] gb|ABO56696.1| RarD protein, DMT superfamily transporter [Burkholderia vietnamiensis G4] Length = 299 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 173/289 (59%), Positives = 210/289 (72%), Gaps = 3/289 (1%) Query: 7 GRGIGLSVLASSLFAFLSGYTRLLAPLDGTDIFAWRILITLLCVLGLLAWRGELSRLRSA 66 GRGI LSV AS+LFA +S Y +LLAPL G DIFAWRIL T L L+A RG L Sbjct: 8 GRGIALSVTASTLFALMSVYAKLLAPLTGLDIFAWRILWTAPGALALIALRGRWPALVEL 67 Query: 67 MAELLASPGRIALLVLMAALLALQQWLFLWGSVNGRALEVSLGYFMLPLSMVLVGRFHYG 126 + + L + AALL +Q WLFLW ++GR LEVSLGYF+LPL+MVLVGRF+Y Sbjct: 68 ARRSVRDWRLLIALPVSAALLGVQLWLFLWAPLHGRMLEVSLGYFLLPLTMVLVGRFYYH 127 Query: 127 EKMDLLQRLAVLCACVGVAHELWMTRAFSWPTLAVALGYPPYFMLRRRIRLDSMLIFAVE 186 E++D LQ AV CA +GVAHE+W TRAF+WPTL VALGYPPYF+LRRRI DS+ FA+E Sbjct: 128 ERLDPLQWAAVACAALGVAHEVWATRAFAWPTLVVALGYPPYFVLRRRINADSLAAFALE 187 Query: 187 LMVLALPSLLALVLSPATGPTLRTPAMW-LLLPGLGILSMIALASYLRAGKLLPMGLFGI 245 + +L P LA+V + AT P R P +W LLPGLG+LS +ALASYL+A ++LPM LFGI Sbjct: 188 IALLC-PVALAMVSASAT-PVGRHPLVWAALLPGLGVLSTLALASYLKASRMLPMALFGI 245 Query: 246 LGYVEPVLLVLVAMAVLGESLQLAQLGTYVPIWLSVLLTALHSVKLMRR 294 LGYVEPVLLV V++ +LGE+L +QL TY PIW +V LTA HS LMRR Sbjct: 246 LGYVEPVLLVAVSLLLLGETLNASQLATYAPIWAAVALTAWHSAMLMRR 294 >ref|ZP_06841485.1| RarD protein, DMT superfamily transporter [Burkholderia sp. Ch1-1] gb|EFG71011.1| RarD protein, DMT superfamily transporter [Burkholderia sp. Ch1-1] Length = 298 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 173/294 (58%), Positives = 213/294 (72%), Gaps = 1/294 (0%) Query: 1 MNPQLVGRGIGLSVLASSLFAFLSGYTRLLAPLDGTDIFAWRILITLLCVLGLLAWRGEL 60 MN RGI LSV AS++FA LS Y LLAPL G DIFAWRI+ T+ L L+A R L Sbjct: 1 MNQYDPKRGIALSVGASAMFALLSAYATLLAPLSGLDIFAWRIVWTVPGALLLIALRKRL 60 Query: 61 SRLRSAMAELLASPGRIALLVLMAALLALQQWLFLWGSVNGRALEVSLGYFMLPLSMVLV 120 LR + ++ P A + + AALL Q W+FLW ++GR LEVSLGYF+LPL MVLV Sbjct: 61 PILRQLLYRMVTEPRLGAAMTVSAALLGAQLWVFLWAPLHGRMLEVSLGYFLLPLVMVLV 120 Query: 121 GRFHYGEKMDLLQRLAVLCACVGVAHELWMTRAFSWPTLAVALGYPPYFMLRRRIRLDSM 180 GRF+Y E++D LQ LAV CA GV HELWMT AFSWPTL VALGYPPYF+LRR+I DS+ Sbjct: 121 GRFYYHERLDGLQWLAVACAAAGVGHELWMTGAFSWPTLLVALGYPPYFVLRRKINQDSL 180 Query: 181 LIFAVELMVLALPSLLALVLSPATGPTLRTPAMW-LLLPGLGILSMIALASYLRAGKLLP 239 +F VE+M+L +++ S + + MW LLLPGLG LS IALASYL+A +LLP Sbjct: 181 AMFTVEMMLLLPVAIVLAFSSDSLALIVGRADMWCLLLPGLGALSTIALASYLKASRLLP 240 Query: 240 MGLFGILGYVEPVLLVLVAMAVLGESLQLAQLGTYVPIWLSVLLTALHSVKLMR 293 + LFGILGYVEPVLLVLV++ +LGE+L AQL TY+PIW++V LTALHSV+L+R Sbjct: 241 VALFGILGYVEPVLLVLVSITLLGETLGAAQLATYIPIWIAVALTALHSVRLVR 294