BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4400.p         (111 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_776666.1| hypothetical protein Bamb_4783 [Burkholderia am...    80   9e-14
ref|ZP_02380934.1| hypothetical protein BuboB_24644 [Burkholderi...    75   4e-12
ref|YP_371678.1| hypothetical protein Bcep18194_B0920 [Burkholde...    75   4e-12
ref|YP_001779108.1| hypothetical protein Bcenmc03_5491 [Burkhold...    70   7e-11
ref|YP_623443.1| hypothetical protein Bcen_3576 [Burkholderia ce...    70   1e-10

>ref|YP_776666.1| hypothetical protein Bamb_4783 [Burkholderia ambifaria AMMD]
 gb|ABI90332.1| hypothetical protein Bamb_4783 [Burkholderia ambifaria AMMD]
          Length = 109

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 39/81 (48%), Positives = 50/81 (61%)

Query: 6  IKQEMERQLESARDAVVDEVSFINFLNVLSADWFAETELHAALLPSPYSSGVLGWKNGNI 65
          +K EM  +L  A + V DE SF+ FL  L+ DWF E E+ A    SPYSSG LGW+NG+I
Sbjct: 8  LKTEMATKLRDALEQVSDERSFVEFLAHLATDWFTEAEIEATTPSSPYSSGALGWENGSI 67

Query: 66 GAFLNASVRWVENSRNGPHFF 86
          G+FL AS  W   S  G  ++
Sbjct: 68 GSFLEASCAWANASTKGLKYY 88


>ref|ZP_02380934.1| hypothetical protein BuboB_24644 [Burkholderia ubonensis Bu]
          Length = 106

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/81 (45%), Positives = 51/81 (62%)

Query: 6  IKQEMERQLESARDAVVDEVSFINFLNVLSADWFAETELHAALLPSPYSSGVLGWKNGNI 65
          +KQ M   L++A + VVDE SF++FL VL  DW AE E+ A     P+  G LGW+N +I
Sbjct: 5  LKQNMADTLQAALERVVDERSFVDFLGVLGRDWKAEREIAARTTSFPHDGGALGWENDSI 64

Query: 66 GAFLNASVRWVENSRNGPHFF 86
          G FL A+V W + S +G  F+
Sbjct: 65 GTFLEAAVDWADASTDGLRFY 85


>ref|YP_371678.1| hypothetical protein Bcep18194_B0920 [Burkholderia sp. 383]
 gb|ABB11034.1| hypothetical protein Bcep18194_B0920 [Burkholderia sp. 383]
          Length = 106

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/81 (45%), Positives = 52/81 (64%)

Query: 6  IKQEMERQLESARDAVVDEVSFINFLNVLSADWFAETELHAALLPSPYSSGVLGWKNGNI 65
          ++++M  +L+ A + VVDE S I+FL VL  DW  E +L A + PSPYS   LGW+N +I
Sbjct: 5  LQRQMAAKLQDALERVVDERSLIHFLRVLGHDWNKERQLEADVPPSPYSRAALGWENHSI 64

Query: 66 GAFLNASVRWVENSRNGPHFF 86
          G +L+A V W E S  G  F+
Sbjct: 65 GEYLDAMVDWAEASEEGLRFY 85


>ref|YP_001779108.1| hypothetical protein Bcenmc03_5491 [Burkholderia cenocepacia
          MC0-3]
 gb|ACA94618.1| conserved hypothetical protein [Burkholderia cenocepacia MC0-3]
          Length = 106

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 35/81 (43%), Positives = 49/81 (60%)

Query: 6  IKQEMERQLESARDAVVDEVSFINFLNVLSADWFAETELHAALLPSPYSSGVLGWKNGNI 65
          +K +M  +L+ A + VVDE S I+FL VL  DW  E +L A +  SPY+   LGW+N +I
Sbjct: 5  LKNQMAAKLQYALERVVDERSLIHFLRVLGHDWHTERQLEADVPLSPYAHAALGWENRSI 64

Query: 66 GAFLNASVRWVENSRNGPHFF 86
          G +L A + W E S  G  F+
Sbjct: 65 GEYLEAMIDWAEASEEGLRFY 85


>ref|YP_623443.1| hypothetical protein Bcen_3576 [Burkholderia cenocepacia AU 1054]
 ref|YP_838418.1| hypothetical protein Bcen2424_4791 [Burkholderia cenocepacia
          HI2424]
 gb|ABF78470.1| conserved hypothetical protein [Burkholderia cenocepacia AU 1054]
 gb|ABK11525.1| conserved hypothetical protein [Burkholderia cenocepacia HI2424]
          Length = 106

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/81 (43%), Positives = 49/81 (60%)

Query: 6  IKQEMERQLESARDAVVDEVSFINFLNVLSADWFAETELHAALLPSPYSSGVLGWKNGNI 65
          +K +M  +L+ A + VVDE S I+FL VL  DW  E +L A +  SPY+   LGW+N +I
Sbjct: 5  LKNQMAAKLQYALERVVDERSLIHFLRVLGHDWHTERQLEADVPLSPYAHAALGWENRSI 64

Query: 66 GAFLNASVRWVENSRNGPHFF 86
          G +L A + W E S  G  F+
Sbjct: 65 GEYLEAMIDWAEASEEGLRFY 85