BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4396.p         (124 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776932.1| methyl-accepting chemotaxis I protein [Herba...   143   7e-33
gb|EEC77111.1| hypothetical protein OsI_15534 [Oryza sativa Indi...   123   1e-26
ref|YP_002551837.1| Cache sensor-containing methyl-accepting che...   119   2e-25
ref|YP_970314.1| methyl-accepting chemotaxis sensory transducer ...   111   4e-23
ref|YP_004235676.1| methyl-accepting chemotaxis sensory transduc...   111   4e-23

>ref|YP_003776932.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ65024.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae
           SmR1]
          Length = 646

 Score =  143 bits (361), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 110/117 (94%), Positives = 114/117 (97%)

Query: 6   LIQRSATAAREIKELITASVDQVGQGTQLADQAGKTMEEIVTSIRRVSDIMVGINAATAE 65
           L QRSATAAREIKELITASV+QVGQGTQLADQAGKTMEEIVTSIRRVSDIMVGINAATAE
Sbjct: 528 LAQRSATAAREIKELITASVEQVGQGTQLADQAGKTMEEIVTSIRRVSDIMVGINAATAE 587

Query: 66  QNTGIAQVGQAVTQMDSTTQQNAALVEESAAAAISLSGQARELVQAVAVFRVASRAL 122
           QNTGIAQVGQAVTQMD+TTQQNAALVEESAAAAISLSGQARELVQAVAVFR+  RA+
Sbjct: 588 QNTGIAQVGQAVTQMDTTTQQNAALVEESAAAAISLSGQARELVQAVAVFRLGQRAV 644


>gb|EEC77111.1| hypothetical protein OsI_15534 [Oryza sativa Indica Group]
          Length = 2209

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 80/111 (72%), Positives = 96/111 (86%)

Query: 9    RSATAAREIKELITASVDQVGQGTQLADQAGKTMEEIVTSIRRVSDIMVGINAATAEQNT 68
            RSA AA+EIKELITASV++V  G QLAD+AG TM E+V SIRRV+DIM  I+AA++EQ+ 
Sbjct: 959  RSAGAAKEIKELITASVERVESGAQLADRAGSTMTEVVGSIRRVTDIMGEISAASSEQSA 1018

Query: 69   GIAQVGQAVTQMDSTTQQNAALVEESAAAAISLSGQARELVQAVAVFRVAS 119
            G+AQVG+AVTQMD TTQQNAALVEE AAAA SL  QA++LVQAV+VFR+AS
Sbjct: 1019 GVAQVGEAVTQMDQTTQQNAALVEEMAAAASSLRSQAQDLVQAVSVFRLAS 1069



 Score =  107 bits (267), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 76/112 (67%), Positives = 90/112 (80%)

Query: 6   LIQRSATAAREIKELITASVDQVGQGTQLADQAGKTMEEIVTSIRRVSDIMVGINAATAE 65
           L QRSA+AA+EIKELITASV QV  GT L DQAG TM EIV SIR+VSDI+  I +AT E
Sbjct: 502 LAQRSASAAKEIKELITASVAQVQSGTALVDQAGTTMTEIVDSIRKVSDIVGEITSATVE 561

Query: 66  QNTGIAQVGQAVTQMDSTTQQNAALVEESAAAAISLSGQARELVQAVAVFRV 117
           Q+ G+AQVG+AV+QMD+ TQQNAALVEESAAAA SL  QA++LV  VA+  +
Sbjct: 562 QSEGVAQVGEAVSQMDNATQQNAALVEESAAAASSLKSQAQQLVDTVAMLAI 613


>ref|YP_002551837.1| Cache sensor-containing methyl-accepting chemotaxis sensory
           transducer [Acidovorax ebreus TPSY]
 gb|ACM31837.1| methyl-accepting chemotaxis sensory transducer with Cache sensor
           [Acidovorax ebreus TPSY]
          Length = 564

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 77/117 (65%), Positives = 100/117 (85%)

Query: 7   IQRSATAAREIKELITASVDQVGQGTQLADQAGKTMEEIVTSIRRVSDIMVGINAATAEQ 66
           +  +  AA+EIK+LITASV++V QG+QL D+AG TM E+VT+IRRV+DIM  I+AA++EQ
Sbjct: 379 LNAAVEAAKEIKQLITASVERVEQGSQLVDKAGATMTEVVTAIRRVTDIMGEISAASSEQ 438

Query: 67  NTGIAQVGQAVTQMDSTTQQNAALVEESAAAAISLSGQARELVQAVAVFRVASRALA 123
           ++G+AQVG+A+TQMD  TQQNAALVEE AAAA SLSGQARELV+AVAVF++A +  A
Sbjct: 439 SSGVAQVGEAITQMDQATQQNAALVEEMAAAASSLSGQARELVEAVAVFKLAQKVSA 495


>ref|YP_970314.1| methyl-accepting chemotaxis sensory transducer [Acidovorax citrulli
           AAC00-1]
 gb|ABM32540.1| methyl-accepting chemotaxis sensory transducer [Acidovorax citrulli
           AAC00-1]
          Length = 598

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 82/114 (71%), Positives = 98/114 (85%)

Query: 6   LIQRSATAAREIKELITASVDQVGQGTQLADQAGKTMEEIVTSIRRVSDIMVGINAATAE 65
           L QRSA AA+EIKELITASV++V  G QLAD+AG TM E+V SIRRV+DIM  I+AA++E
Sbjct: 404 LAQRSAGAAKEIKELITASVERVEDGAQLADRAGSTMTEVVGSIRRVTDIMGEISAASSE 463

Query: 66  QNTGIAQVGQAVTQMDSTTQQNAALVEESAAAAISLSGQARELVQAVAVFRVAS 119
           Q+ G+AQVG+AVTQMD TTQQNAALVEE AAAA SL  QA++LVQAV+VFR+AS
Sbjct: 464 QSAGVAQVGEAVTQMDQTTQQNAALVEEMAAAASSLRSQAQDLVQAVSVFRLAS 517


>ref|YP_004235676.1| methyl-accepting chemotaxis sensory transducer [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gb|ADX47109.1| methyl-accepting chemotaxis sensory transducer [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 592

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 82/114 (71%), Positives = 98/114 (85%)

Query: 6   LIQRSATAAREIKELITASVDQVGQGTQLADQAGKTMEEIVTSIRRVSDIMVGINAATAE 65
           L QRSA AA+EIKELITASV++V  G QLAD+AG TM E+V SIRRV+DIM  I+AA++E
Sbjct: 404 LAQRSAGAAKEIKELITASVERVESGAQLADRAGSTMTEVVGSIRRVTDIMGEISAASSE 463

Query: 66  QNTGIAQVGQAVTQMDSTTQQNAALVEESAAAAISLSGQARELVQAVAVFRVAS 119
           Q+ G+AQVG+AVTQMD TTQQNAALVEE AAAA SL  QA++LVQAV+VFR+AS
Sbjct: 464 QSAGVAQVGEAVTQMDQTTQQNAALVEEMAAAASSLRSQAQDLVQAVSVFRLAS 517