BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4395.p         (129 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776930.1| hypothetical protein Hsero_3543 [Herbaspiril...   163   1e-38
ref|YP_001100370.1| hypothetical protein HEAR2110 [Herminiimonas...   145   1e-33
emb|CBA31400.1| hypothetical protein Csp_F37340 [Curvibacter put...   137   7e-31
ref|YP_525055.1| hypothetical protein Rfer_3825 [Rhodoferax ferr...   136   8e-31
ref|YP_001352479.1| hypothetical protein mma_0789 [Janthinobacte...   136   1e-30

>ref|YP_003776930.1| hypothetical protein Hsero_3543 [Herbaspirillum seropedicae SmR1]
 gb|ADJ65022.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 138

 Score =  163 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 96/138 (69%), Positives = 103/138 (74%), Gaps = 9/138 (6%)

Query: 1   MRAGAGQRYQRAASLGVGKCPAGGR-----RMQQGGVGGP----LSCRFLCPIIAPMNDT 51
           MR    QRYQ  AS  VG+    GR     R ++   G P    LS     PIIA MNDT
Sbjct: 1   MRCSRRQRYQPGASAAVGERRHPGRTTGLPRRRRLSEGRPAPKGLSWPGRYPIIAAMNDT 60

Query: 52  AQRPALPDRLSVDPRSPHYVAAIFEHDIGIKLNDKEFNNVSEYCISEGWIKIPAGRALDR 111
           AQRP+ PDRLSVDPRSPHYVAAIFE D+GIKLN KEFNNVSEYCISEGWIKIPAGRALDR
Sbjct: 61  AQRPSFPDRLSVDPRSPHYVAAIFEFDVGIKLNGKEFNNVSEYCISEGWIKIPAGRALDR 120

Query: 112 KGNPMLTKLKGRVEPFYR 129
           KGNPM+TKLKG+VEPFYR
Sbjct: 121 KGNPMMTKLKGQVEPFYR 138


>ref|YP_001100370.1| hypothetical protein HEAR2110 [Herminiimonas arsenicoxydans]
 emb|CAL62247.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans]
          Length = 82

 Score =  145 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 66/82 (80%), Positives = 76/82 (92%)

Query: 48  MNDTAQRPALPDRLSVDPRSPHYVAAIFEHDIGIKLNDKEFNNVSEYCISEGWIKIPAGR 107
           MNDT   P+LPDRLSVDPRSP+Y AAIFEHD+GIKLNDKE ++V EYCISEGWIK+PAG+
Sbjct: 1   MNDTPHTPSLPDRLSVDPRSPYYDAAIFEHDVGIKLNDKERSDVEEYCISEGWIKVPAGK 60

Query: 108 ALDRKGNPMLTKLKGRVEPFYR 129
           ALDRKGNP++TKLKG+VEPFYR
Sbjct: 61  ALDRKGNPLMTKLKGKVEPFYR 82


>emb|CBA31400.1| hypothetical protein Csp_F37340 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 82

 Score =  137 bits (344), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 58/82 (70%), Positives = 71/82 (86%)

Query: 48  MNDTAQRPALPDRLSVDPRSPHYVAAIFEHDIGIKLNDKEFNNVSEYCISEGWIKIPAGR 107
           M +T +RPALPD LS+DPRSPH+VAA+FEHDIGI+ NDKE  +V EYC+SEGWIK+PAG+
Sbjct: 1   MTNTTERPALPDHLSIDPRSPHHVAAVFEHDIGIRFNDKERMDVEEYCVSEGWIKVPAGK 60

Query: 108 ALDRKGNPMLTKLKGRVEPFYR 129
            +DRKG P+L KLKG+VE FYR
Sbjct: 61  TVDRKGKPLLIKLKGKVEAFYR 82


>ref|YP_525055.1| hypothetical protein Rfer_3825 [Rhodoferax ferrireducens T118]
 gb|ABD71524.1| conserved hypothetical protein [Rhodoferax ferrireducens T118]
          Length = 97

 Score =  136 bits (343), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 59/82 (71%), Positives = 71/82 (86%)

Query: 48  MNDTAQRPALPDRLSVDPRSPHYVAAIFEHDIGIKLNDKEFNNVSEYCISEGWIKIPAGR 107
           MN+  Q P LPDRLS+DPRSPH+VAA+FEHD+GI+LNDKE  NV+EYCISEGWIK+PAG+
Sbjct: 16  MNEATQFPPLPDRLSIDPRSPHHVAAVFEHDVGIRLNDKERLNVAEYCISEGWIKVPAGK 75

Query: 108 ALDRKGNPMLTKLKGRVEPFYR 129
            LDRKGNP++  LKG V+ FYR
Sbjct: 76  TLDRKGNPLMITLKGSVQAFYR 97


>ref|YP_001352479.1| hypothetical protein mma_0789 [Janthinobacterium sp. Marseille]
 gb|ABR91692.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 82

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 60/82 (73%), Positives = 71/82 (86%)

Query: 48  MNDTAQRPALPDRLSVDPRSPHYVAAIFEHDIGIKLNDKEFNNVSEYCISEGWIKIPAGR 107
           MNDT Q P LPDRLS+DPRSP +VAAIFEH++GIKLNDKE  +V EYCISEGW+K+PAG+
Sbjct: 1   MNDTTQLPPLPDRLSIDPRSPFHVAAIFEHEVGIKLNDKERFDVEEYCISEGWVKVPAGK 60

Query: 108 ALDRKGNPMLTKLKGRVEPFYR 129
            LDRKGNP+  K+KG+VE FYR
Sbjct: 61  TLDRKGNPLTIKVKGKVEAFYR 82