BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4393.p (470 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776929.1| hypothetical protein Hsero_3542 [Herbaspiril... 579 e-163 ref|YP_004712573.1| hypothetical protein PSTAB_0203 [Pseudomonas... 425 e-116 gb|AEA82085.1| conserved hypothetical protein [Pseudomonas stutz... 423 e-116 ref|YP_001170691.1| hypothetical protein PST_0142 [Pseudomonas s... 422 e-116 ref|ZP_07776098.1| hypothetical protein PFWH6_3516 [Pseudomonas ... 406 e-111 >ref|YP_003776929.1| hypothetical protein Hsero_3542 [Herbaspirillum seropedicae SmR1] gb|ADJ65021.1| hypothetical protein Hsero_3542 [Herbaspirillum seropedicae SmR1] Length = 469 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 307/468 (65%), Positives = 354/468 (75%), Gaps = 10/468 (2%) Query: 12 MRSTVEEMQAARSAAQAYR------HQP--GSLQAAHVYAQLFVAAPDEAALAMGRDYLV 63 M++T+EEMQAA SA++ Y H P L A +YAQL VA PD AALA R YLV Sbjct: 1 MQATLEEMQAAASASRRYHPNSDPHHDPHGAGLLPARIYAQLNVAEPDAAALAQARRYLV 60 Query: 64 QQMQEAQELPCDLPQEPAALASWMEARAAEVGVAYESYLKERQQGAPRRYFSGRAHALNF 123 Q++ Q LPC+LP +A+WM+ARAA+VGVAYE+YL+ER+ GAPR+YFSGRAHALNF Sbjct: 61 TQLEATQALPCELPPAGQDMAAWMQARAAQVGVAYEAYLQERRAGAPRQYFSGRAHALNF 120 Query: 124 LRCVGPTKMVDGAWLYSAIRRWRDPLFRPLILTYLEELGDGDAAMNHVTLYRSLLAANGC 183 L V PTK+VDGAWLYSA++ WRDP+FRPLILTYLEELGDG+ AMNHV+LYRSLL A+GC Sbjct: 121 LLRVAPTKLVDGAWLYSAVKHWRDPVFRPLILTYLEELGDGEVAMNHVSLYRSLLQAHGC 180 Query: 184 EHGPALSEEHYVQGAIQLGLAHHGAEFEAEVFGFNLGYEQLPLHLLITAYELNELGIDPY 243 E LS+ HYVQGA+QL L HG EF E+FGFNLGYEQLPLHLLITAYELNELGIDPY Sbjct: 181 EQADWLSQAHYVQGALQLALGWHGDEFIPEMFGFNLGYEQLPLHLLITAYELNELGIDPY 240 Query: 244 YFTLHVTIDNAASGHAHKAAQAVADIVAQQDDPAGFYRRVRDGYRLNDLGMSTTSVIADF 303 YFTLHVTIDNAASGHA KA AV + AQ D F +R+R GY LN+LG ST VI F Sbjct: 241 YFTLHVTIDNAASGHARKAVDAVLEAAAQWPDREEFLQRMRRGYLLNELGASTLGVIGSF 300 Query: 304 DPERALVAVLQEKTAVGRMMHSDYCRIGGKTVNQWLEQPDGMASFLAEMEKAKWTTRGKP 363 D ++ + VL +K A GRMMHSDYCRIGGKTVNQWLE+P+GM FLA ME+ KW RG+P Sbjct: 301 DLDQEVQRVLADKAAFGRMMHSDYCRIGGKTVNQWLERPEGMRDFLAAMEQGKWILRGEP 360 Query: 364 AEESRFWRLIDAAGGQMFGVFEGYEKQVIREWIEEGWSDGRRQPSFRALARGRENAA--A 421 A SRFWRLIDA GG+MFGVF GYEKQVIREWIE GW D RQPSFRA ARGR+ A Sbjct: 361 AGHSRFWRLIDAPGGEMFGVFNGYEKQVIREWIETGWDDAPRQPSFRAQARGRQGVAEQP 420 Query: 422 EAPAVPAVALGEVDLDALVAELAPGRHHFVPGLEATRRYSERYRRACV 469 E P A + + LDALVA L+P HH PGLEATR +S+ YR C+ Sbjct: 421 EQPHQEAPSHLDAGLDALVAPLSPACHHLPPGLEATRLFSQCYRTRCI 468 >ref|YP_004712573.1| hypothetical protein PSTAB_0203 [Pseudomonas stutzeri ATCC 17588 = LMG 11199] gb|AEJ03484.1| hypothetical protein PSTAB_0203 [Pseudomonas stutzeri ATCC 17588 = LMG 11199] Length = 473 Score = 425 bits (1092), Expect = e-116, Method: Composition-based stats. Identities = 229/438 (52%), Positives = 280/438 (63%), Gaps = 29/438 (6%) Query: 51 DEAALAMGRDYLVQQMQEAQELPCDLPQEPAALASWMEARAAEVGVAYESYLKERQQGAP 110 DE A DYL Q++ A LPCDLP +PA L +W+ R VG Y++YL++R+ G P Sbjct: 34 DEHARENAADYLRTQLEAAAALPCDLPADPADLDAWVLQRTEAVGHQYQAYLEQRRAGGP 93 Query: 111 RRYFSGRAHALNFLRCVGPTKMVDGAWLYSAIRRWRDPLFRPLILTYLEELGDGDAAMNH 170 RRYF +AHAL+FLR V PTK+VDGAWLY ++RW D F LI TYLEELGDG NH Sbjct: 94 RRYFPSKAHALHFLRGVAPTKLVDGAWLYGLLQRWDDARFTALIQTYLEELGDGLPEKNH 153 Query: 171 VTLYRSLLAANGCEHGPALSEEHYVQGAIQLGLAHHGAEFEAEVFGFNLGYEQLPLHLLI 230 V LYR LLA+ GC+ L +EH+VQGAIQL LA H +F E+ GFNLGYEQLPLHLLI Sbjct: 154 VVLYRKLLASQGCDDWQELDDEHFVQGAIQLALAEHAEQFLPEIIGFNLGYEQLPLHLLI 213 Query: 231 TAYELNELGIDPYYFTLHVTIDNAASGHAHKAAQAVADIVAQQDDPAGFYRRVRDGYRLN 290 T+YEL ELG+DPYYFTLHVT+DNA +GHA KA Q + D Q D A FYRRVRDGYRLN Sbjct: 214 TSYELTELGVDPYYFTLHVTVDNADNGHAKKAVQGLLDAWPQVGDSAEFYRRVRDGYRLN 273 Query: 291 DLGMSTTSVIADFDPERALVAVLQEKTAVGRMMHSDYCRIGGKTVNQWLEQPDGMASFLA 350 DLG ST SVI +FD R + + ++K AVG+ +HSDYCR G+TVNQWL D + FLA Sbjct: 274 DLGASTVSVIGNFDLGREVQRIFEKKAAVGQFVHSDYCRFEGRTVNQWLG--DDVEQFLA 331 Query: 351 EMEKAKWTTRGKPAEESRFWRLIDAAGGQMFGVFEGYEKQVIREWIEEGW-SDGRRQP-- 407 ++K W RG +ESRFW+LI MFGVF YE+Q+I +WI + W +DG+R P Sbjct: 332 VLDKRGWIKRGHDPQESRFWQLIVGEQAPMFGVFSAYEQQMIHDWIADDWQADGKRSPRG 391 Query: 408 ---SFRALARGRENAAAEAPAVPAVALGEVDLDA---------------------LVAEL 443 +AL GR A+A A PA + D D L+ L Sbjct: 392 ALLQRQALFNGRRTASAPAMPQPAEHVSGNDFDEELQLLEQQVARLPDRAARMRLLLPLL 451 Query: 444 APGRHHFVPGLEATRRYS 461 AP RHH GL ATR ++ Sbjct: 452 APQRHHSAAGLLATRLFN 469 >gb|AEA82085.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166] Length = 473 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 228/438 (52%), Positives = 280/438 (63%), Gaps = 29/438 (6%) Query: 51 DEAALAMGRDYLVQQMQEAQELPCDLPQEPAALASWMEARAAEVGVAYESYLKERQQGAP 110 DE A DYL Q++ A LPCDLP +PA L +W+ R VG Y++YL++R+ G P Sbjct: 34 DEHARENAADYLRTQLEAAAALPCDLPADPADLDAWVLQRTEAVGHQYQAYLEQRRAGGP 93 Query: 111 RRYFSGRAHALNFLRCVGPTKMVDGAWLYSAIRRWRDPLFRPLILTYLEELGDGDAAMNH 170 RRYF +AHAL+FLR V PTK+VDGAWLY ++RW D F LI TYLEELGDG NH Sbjct: 94 RRYFPSKAHALHFLRGVAPTKLVDGAWLYGLLQRWDDARFTALIQTYLEELGDGLPEKNH 153 Query: 171 VTLYRSLLAANGCEHGPALSEEHYVQGAIQLGLAHHGAEFEAEVFGFNLGYEQLPLHLLI 230 V LYR LLA+ GC+ L +EH+VQGAIQL LA H +F E+ GFNLGYEQLPLHLLI Sbjct: 154 VVLYRKLLASQGCDDWQELDDEHFVQGAIQLALAEHAEQFLPEIIGFNLGYEQLPLHLLI 213 Query: 231 TAYELNELGIDPYYFTLHVTIDNAASGHAHKAAQAVADIVAQQDDPAGFYRRVRDGYRLN 290 T+YEL ELG+DPYYFTLHVT+DNA +GHA KA Q + D Q D A FYRRVRDGYRLN Sbjct: 214 TSYELTELGVDPYYFTLHVTVDNADNGHAKKAVQGLLDAWPQVGDSAEFYRRVRDGYRLN 273 Query: 291 DLGMSTTSVIADFDPERALVAVLQEKTAVGRMMHSDYCRIGGKTVNQWLEQPDGMASFLA 350 DLG ST SVI +FD R + + ++K AVG+ +HSDYCR G+TVNQWL + + FLA Sbjct: 274 DLGASTVSVIGNFDLGREVQRIFEKKAAVGQFVHSDYCRFEGRTVNQWLGE--DVEQFLA 331 Query: 351 EMEKAKWTTRGKPAEESRFWRLIDAAGGQMFGVFEGYEKQVIREWIEEGW-SDGRRQP-- 407 ++K W RG +ESRFW+LI MFGVF YE+Q+I +WI + W +DG+R P Sbjct: 332 VLDKRGWIKRGHDPQESRFWQLIVGEQAPMFGVFSAYEQQMIHDWIADDWQADGKRSPRG 391 Query: 408 ---SFRALARGRENAAAEAPAVPAVALGEVDLDA---------------------LVAEL 443 +AL GR A+A A PA + D D L+ L Sbjct: 392 ALLQRQALFNGRRTASAPAMPQPAEHVSGNDFDEELQLLEQQVARLPDRAARMRLLLPLL 451 Query: 444 APGRHHFVPGLEATRRYS 461 AP RHH GL ATR ++ Sbjct: 452 APQRHHSAAGLLATRLFN 469 >ref|YP_001170691.1| hypothetical protein PST_0142 [Pseudomonas stutzeri A1501] gb|ABP77849.1| conserved hypothetical protein [Pseudomonas stutzeri A1501] Length = 473 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 229/438 (52%), Positives = 280/438 (63%), Gaps = 29/438 (6%) Query: 51 DEAALAMGRDYLVQQMQEAQELPCDLPQEPAALASWMEARAAEVGVAYESYLKERQQGAP 110 DE A DYL Q++ A LPCDLP +PA L +W+ R VG Y++YL++R+ G P Sbjct: 34 DEHARENAADYLRTQLEAAAALPCDLPADPADLDAWVLQRTEAVGHQYQAYLEQRRAGGP 93 Query: 111 RRYFSGRAHALNFLRCVGPTKMVDGAWLYSAIRRWRDPLFRPLILTYLEELGDGDAAMNH 170 RRYF +AHAL+FLR V PTK+VDGAWLY ++RW D F LI TYLEELGDG NH Sbjct: 94 RRYFPSKAHALHFLRGVAPTKLVDGAWLYGLLQRWDDARFTALIQTYLEELGDGLPEKNH 153 Query: 171 VTLYRSLLAANGCEHGPALSEEHYVQGAIQLGLAHHGAEFEAEVFGFNLGYEQLPLHLLI 230 V LYR LLA+ GC+ L +EH+VQGAIQL LA H +F E+ GFNLGYEQLPLHLLI Sbjct: 154 VVLYRKLLASQGCDDWQELDDEHFVQGAIQLALAEHAEQFLPEIIGFNLGYEQLPLHLLI 213 Query: 231 TAYELNELGIDPYYFTLHVTIDNAASGHAHKAAQAVADIVAQQDDPAGFYRRVRDGYRLN 290 T+YEL ELGIDPYYFTLHVT+DNA +GHA KA Q + D Q D A FYRRVRDGYRLN Sbjct: 214 TSYELTELGIDPYYFTLHVTVDNADNGHAKKAVQGLLDAWPQVGDSAEFYRRVRDGYRLN 273 Query: 291 DLGMSTTSVIADFDPERALVAVLQEKTAVGRMMHSDYCRIGGKTVNQWLEQPDGMASFLA 350 DLG ST SVI +FD R + + ++K AVG+ +HSDYCR G+TVNQWL + + FLA Sbjct: 274 DLGASTVSVIGNFDLGREVQRIFEKKAAVGQFVHSDYCRFEGRTVNQWLGE--DVEQFLA 331 Query: 351 EMEKAKWTTRGKPAEESRFWRLIDAAGGQMFGVFEGYEKQVIREWIEEGW-SDGRRQP-- 407 ++K W RG +ESRFW+LI MFGVF YE+Q+I +WI + W +DG+R P Sbjct: 332 VLDKRGWIKRGHDPQESRFWQLIVGEQAPMFGVFSAYEQQMIHDWIADDWQADGKRSPRG 391 Query: 408 ---SFRALARGRENAAAEAPAVPAVALGEVDLDA---------------------LVAEL 443 +AL GR A+A A PA + D D L+ L Sbjct: 392 ALLQRQALFNGRRAASAPAMPQPAEHVSGNDFDEELQLLEQQVARLPDRAARMRLLLPLL 451 Query: 444 APGRHHFVPGLEATRRYS 461 AP RHH GL ATR ++ Sbjct: 452 APQRHHSAAGLLATRLFN 469 >ref|ZP_07776098.1| hypothetical protein PFWH6_3516 [Pseudomonas fluorescens WH6] gb|EFQ62722.1| hypothetical protein PFWH6_3516 [Pseudomonas fluorescens WH6] Length = 459 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 227/449 (50%), Positives = 284/449 (63%), Gaps = 13/449 (2%) Query: 22 ARSAAQAYRHQPGSLQAAHVYAQLFVAAPDEAALAMGRDYLVQQMQEAQELPCDLPQEPA 81 A S A H G + VY QL AP+ ALA R++L Q+ ++ +LP EP Sbjct: 6 ALSGQPASVHYSGCGEYQRVYQQLHGEAPNACALA--REFLHSQLALVKDADSELPDEPE 63 Query: 82 ALASWMEARAAEVGVAYESYLKERQQGAPRRYFSGRAHALNFLRCVGPTKMVDGAWLYSA 141 L +W+E R A V AY YL++R+QG PRRYF +AHAL L+ V PTK VDGAWLY Sbjct: 64 HLYAWVEQRCAVVAQAYAEYLEQRRQGRPRRYFRNKAHALYVLQRVAPTKQVDGAWLYGL 123 Query: 142 IRRWRDPLFRPLILTYLEELGDGDAAMNHVTLYRSLLAANGCEHGPALSEEHYVQGAIQL 201 +R W+D F L+ TYLEELGDGDAA NHV +YR LL+ + + L +EHY+QGA+Q+ Sbjct: 124 LRYWQDQRFDGLLTTYLEELGDGDAAQNHVVIYRKLLSDHDADSDAGLEDEHYLQGALQM 183 Query: 202 GLAHHGAEFEAEVFGFNLGYEQLPLHLLITAYELNELGIDPYYFTLHVTIDNAASGHAHK 261 L EF EV G+NLGYEQLPLHLLIT+YEL+ELGIDPYYFTLHVTIDNA+SGHA K Sbjct: 184 ALGLCTEEFLPEVIGYNLGYEQLPLHLLITSYELSELGIDPYYFTLHVTIDNASSGHACK 243 Query: 262 AAQAVADIVAQQDDPAGFYRRVRDGYRLNDLGMSTTSVIADFDPERALVAVLQEKTAVGR 321 AAQ+V +++ + A FYRRV GYRLNDLG TT+VI F+ + +VA+L+ K G+ Sbjct: 244 AAQSVLNLLPLGEGRAQFYRRVARGYRLNDLGPGTTAVIDSFNLQDEVVAMLERKRTFGQ 303 Query: 322 MMHSDYCRIGGKTVNQWLEQPDGMASFLAEMEKAKWTTRGKPAEESRFWRLIDAAGGQMF 381 MHSDYCR GKTVNQWL P + FL ++ W + SRFW+LI+ AG MF Sbjct: 304 HMHSDYCRFEGKTVNQWLATPGQIPDFLQALQDKGWIKLNQDPANSRFWQLIEGAGAAMF 363 Query: 382 GVFEGYEKQVIREWIEEGWSDGRRQPSFRALARGRENA-AAEAPAVPAVA---------L 431 GVF GYEKQV+ +WI WS +R P+ R RG A A + PA P Sbjct: 364 GVFSGYEKQVLHDWIAGDWSRDQRVPAARP-GRGSPFARAQQRPADPDTQALVESLSNLT 422 Query: 432 GEVDLDALVAELAPGRHHFVPGLEATRRY 460 GE L+AL+ L+ RH GL ATRR+ Sbjct: 423 GEQQLNALIPWLSARRHCTPAGLYATRRF 451