BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4391.p (265 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004846900.1| hypothetical protein NH8B_1669 [Pseudogulben... 221 9e-56 ref|NP_902096.1| hypothetical protein CV_2426 [Chromobacterium v... 192 3e-47 ref|YP_560758.1| hypothetical protein Bxe_A0226 [Burkholderia xe... 191 1e-46 ref|YP_004029537.1| ATP synthase protein I [Burkholderia rhizoxi... 181 1e-43 ref|ZP_02375127.1| hypothetical protein BthaT_29201 [Burkholderi... 176 3e-42 >ref|YP_004846900.1| hypothetical protein NH8B_1669 [Pseudogulbenkiania sp. NH8B] ref|YP_004847329.1| hypothetical protein NH8B_2100 [Pseudogulbenkiania sp. NH8B] dbj|BAK76486.1| protein of unknown function [Pseudogulbenkiania sp. NH8B] dbj|BAK76915.1| protein of unknown function [Pseudogulbenkiania sp. NH8B] Length = 241 Score = 221 bits (563), Expect = 9e-56, Method: Composition-based stats. Identities = 112/220 (50%), Positives = 146/220 (66%), Gaps = 3/220 (1%) Query: 41 AMCVNYKPTPKSIITALTGADTSATPDWPEETWQDYAAPVVRAGLQGEPELIVGTYGMMP 100 MCVN+ P + + L + DWP E WQDY AP++ G P ++ YG +P Sbjct: 18 GMCVNFIPPTRQQLLDLFDVEPPQL-DWPLEVWQDYIAPIIIDNGSG-PHALLANYGFVP 75 Query: 101 RRKLQGGLQISTMNARAETIGEKRSYAGPWRALQTCLLPMHWFYEPNYEAGRPQRWAIGM 160 +R + G+++STMNARAETIG+ R+Y W A + CL+PM +F+EP YE+G+ +RW IG+ Sbjct: 76 KRHMPLGIRLSTMNARAETIGQLRTYNQSWHAGRRCLVPMQFFFEPCYESGKAERWRIGL 135 Query: 161 ADDQPFCVAGLWRAWEEPEGGYAFSFTQITINADGHPLMNRFHKPGEEKRNLVIIPPADY 220 A QPF VAG+WRAW E +G + +F+Q+TINAD HPLM R HKPG+EKRNLVII P Y Sbjct: 136 ASGQPFAVAGIWRAWPEEDGSISHAFSQVTINADDHPLMRRMHKPGDEKRNLVIIEPEHY 195 Query: 221 ADWLNVGDTENARRMLVNYPASAMKAWPAPKS-EARSSSG 259 DWL D E AR L NYPA M A PAPK+ +A +SG Sbjct: 196 QDWLACRDPEIARSCLTNYPAEQMLAEPAPKTNKAPPTSG 235 >ref|NP_902096.1| hypothetical protein CV_2426 [Chromobacterium violaceum ATCC 12472] gb|AAQ60098.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 214 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 107/224 (47%), Positives = 136/224 (60%), Gaps = 12/224 (5%) Query: 42 MCVNYKPTPKSIITALTGADTSATPDWPEETWQDYAAPVV-RAGLQGEPELIVGTYGMMP 100 MCVN+ P + + G D WP+E WQDY AP++ R GL+ +YG +P Sbjct: 1 MCVNFIPPSRGQLREWLGCD-PGDGQWPDEAWQDYPAPILTRDGLR------FASYGFIP 53 Query: 101 RRKLQGGLQISTMNARAETIGEKRSYAGPWRALQTCLLPMHWFYEPNYEAGRPQRWAIGM 160 +R G+++STMNAR ETIG+ RSY WR Q CL+PM FYEP YE+GR R I M Sbjct: 54 KRHQPAGVRLSTMNARVETIGQLRSYRDAWRNCQLCLVPMQAFYEPCYESGRAVRTKISM 113 Query: 161 ADDQPFCVAGLWRAWEEPEGGYAFSFTQITINADGHPLMNRFHKPGEEKRNLVIIPPADY 220 AD PF VAGLWR W E +G + +FTQITI+ADGH +M R H+PG+EKR+L IIP A Y Sbjct: 114 ADGAPFAVAGLWREWREADGSISLAFTQITIHADGHAVMGRMHRPGDEKRSLAIIPAALY 173 Query: 221 ADWLNVGDTENARRMLVNYPASAMKAWPAPKSEARSSSGQGSLL 264 WL+ + E AR L + A AM+A + E QGSL Sbjct: 174 QAWLHCRNPEQARAFLQLFSAEAMRA----EGEIADPPRQGSLF 213 >ref|YP_560758.1| hypothetical protein Bxe_A0226 [Burkholderia xenovorans LB400] gb|ABE32706.1| Conserved hypothetical protein [Burkholderia xenovorans LB400] Length = 227 Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 92/212 (43%), Positives = 138/212 (65%), Gaps = 7/212 (3%) Query: 42 MCVNYKPTPKSIITALTGADTSATPD--WPEETWQDYAAPVVRAGLQGEPELIVGTYGMM 99 MC +Y+ P + PD + E ++DY AP+++ E + ++G++ Sbjct: 1 MCTSYEANPNDAWDVFS---LFPVPDFEYRPEIYKDYYAPILQRNAD-EFATVPASFGIV 56 Query: 100 PRRKLQGGLQI-STMNARAETIGEKRSYAGPWRALQTCLLPMHWFYEPNYEAGRPQRWAI 158 PRR + G+++ TMNAR+E++G+KRS++G W+ LQ CL+P F+EPNYE G+P RW I Sbjct: 57 PRRHIPPGVKVFDTMNARSESVGDKRSFSGAWKNLQLCLIPCRAFFEPNYETGKPIRWKI 116 Query: 159 GMADDQPFCVAGLWRAWEEPEGGYAFSFTQITINADGHPLMNRFHKPGEEKRNLVIIPPA 218 GMA+ +AGLWR+W+E +G +FT +T+N+D HPLM RFHKPG+EKR++VI+PP Sbjct: 117 GMANGGALAIAGLWRSWKEVDGSQTLAFTMLTVNSDEHPLMKRFHKPGDEKRSVVIVPPT 176 Query: 219 DYADWLNVGDTENARRMLVNYPASAMKAWPAP 250 +Y+DWL+ T+ AR L +P AM A P P Sbjct: 177 EYSDWLSCKTTDEARSFLNLFPVEAMHAEPFP 208 >ref|YP_004029537.1| ATP synthase protein I [Burkholderia rhizoxinica HKI 454] emb|CBW75393.1| ATP synthase protein I [Burkholderia rhizoxinica HKI 454] Length = 238 Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 94/211 (44%), Positives = 129/211 (61%), Gaps = 8/211 (3%) Query: 41 AMCVNYKPTPKSIITALTGADTSATPDWPEETWQDYAAPVVRAGLQGEPELIVGTYGMMP 100 +C NY+ ++ T T D+P ++DYAAP+ R G +G T+G++P Sbjct: 24 GVCTNYESATLDDLSTFTEF-PRPTFDYPRSVYKDYAAPIFRMG-EGTRSTDRATFGLVP 81 Query: 101 RRKLQGGLQI-STMNARAETIGEKRSYAGPWRALQTCLLPMHWFYEPNYEAGRPQRWAIG 159 R+ + G+++ TMNARAET+GEKRS++ WR Q CL+P FYEPNYE G+ RW I Sbjct: 82 RKHIPPGVKVFDTMNARAETVGEKRSFSTCWRNGQLCLIPASSFYEPNYETGKAVRWRIK 141 Query: 160 MADDQPFCVAGLWRAWEEPEGGYAFSFTQITINADGHPLMNRFHKPGEEKRNLVIIPPAD 219 +A +PF +AGLWRAW + + SFT +T+NAD HPL+ RFH+PG EKR +VI+ Sbjct: 142 LASGEPFSIAGLWRAWND-----SLSFTMLTLNADSHPLLRRFHEPGSEKRGIVILRREY 196 Query: 220 YADWLNVGDTENARRMLVNYPASAMKAWPAP 250 Y DWL + E AR L PA + A PAP Sbjct: 197 YDDWLTCREPEVARTFLSLLPADELVAGPAP 227 >ref|ZP_02375127.1| hypothetical protein BthaT_29201 [Burkholderia thailandensis TXDOH] Length = 214 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 85/182 (46%), Positives = 118/182 (64%), Gaps = 1/182 (0%) Query: 68 WPEETWQDYAAPVVRAGLQGEPELIVGTYGMMPRRKLQGGLQISTMNARAETIGEKRSYA 127 W E + DY AP+VRA G E ++ +GMMP+ G + T+NAR+ET+ EK +Y Sbjct: 31 WKPEIYPDYLAPIVRAAGDG-AEAVIANFGMMPKAFQPAGKKFMTVNARSETVAEKPAYR 89 Query: 128 GPWRALQTCLLPMHWFYEPNYEAGRPQRWAIGMADDQPFCVAGLWRAWEEPEGGYAFSFT 187 WRA Q CL+P W YEPN+E G+ R+ IG+ D QP+CVAG+WRAW P+G + Sbjct: 90 TAWRAGQRCLIPTAWIYEPNWETGKHVRYRIGIGDWQPYCVAGIWRAWRGPDGAETLAMA 149 Query: 188 QITINADGHPLMNRFHKPGEEKRNLVIIPPADYADWLNVGDTENARRMLVNYPASAMKAW 247 +T+NADGHP+M H+ +EKR++VI+ P+DY +WL+ + + AR ML YPA M A Sbjct: 150 MLTVNADGHPVMKHMHRLDDEKRSVVILRPSDYDEWLHTTNVDAARAMLQLYPADEMVAE 209 Query: 248 PA 249 PA Sbjct: 210 PA 211