BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4390.p         (163 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774710.1| hypothetical protein Hsero_1286 [Herbaspiril...   194   3e-48
ref|YP_001859899.1| hypothetical protein Bphy_3718 [Burkholderia...   105   2e-21
ref|YP_285207.1| hypothetical protein Daro_1991 [Dechloromonas a...   105   2e-21
ref|YP_004473332.1| hypothetical protein Psefu_1261 [Pseudomonas...   102   2e-20
ref|YP_285115.1| hypothetical protein Daro_1899 [Dechloromonas a...   102   3e-20

>ref|YP_003774710.1| hypothetical protein Hsero_1286 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62802.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 166

 Score =  194 bits (494), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 103/130 (79%), Positives = 118/130 (90%)

Query: 34  QEATASQAGIVKVLQGDVRAERSGKTRPLATGERLYAGDRVLTGAASAVGFTLRDDTLIS 93
           Q+  A+QA IVKV++G+V+A+R GKTRPLA GERLY GDRVLT AAS+VGFTLRDDTLIS
Sbjct: 37  QQDGATQAAIVKVMRGEVQAQREGKTRPLAVGERLYEGDRVLTAAASSVGFTLRDDTLIS 96

Query: 94  LGSNSQFLLEQFAYNDKTDEGSVAVRLTKGTLRYVSGLIGKHSPESQRLSTPTATIGIRG 153
           LG NSQFLLEQF +N+KTDEG++AVR+ KGTLRYVSGLIGKH+PE Q+ STPTATIGIRG
Sbjct: 97  LGPNSQFLLEQFVFNEKTDEGNIAVRMVKGTLRYVSGLIGKHAPERQQFSTPTATIGIRG 156

Query: 154 TDFIVEVAGE 163
           TDFIVEVAGE
Sbjct: 157 TDFIVEVAGE 166


>ref|YP_001859899.1| hypothetical protein Bphy_3718 [Burkholderia phymatum STM815]
 gb|ACC72853.1| conserved hypothetical protein [Burkholderia phymatum STM815]
          Length = 154

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 60/134 (44%), Positives = 87/134 (64%), Gaps = 1/134 (0%)

Query: 29  GSAAAQEATASQA-GIVKVLQGDVRAERSGKTRPLATGERLYAGDRVLTGAASAVGFTLR 87
           G A A  A A+ A G+VK ++G V  ER+ ++     G  +Y  DR++TG AS+VG TLR
Sbjct: 15  GCAVAIGARAADAIGVVKTVKGAVHIERAAQSVDALIGSEVYGSDRIVTGPASSVGITLR 74

Query: 88  DDTLISLGSNSQFLLEQFAYNDKTDEGSVAVRLTKGTLRYVSGLIGKHSPESQRLSTPTA 147
           D+TL+S GS+S   L  FA+N  T +G++   + +G+L  V G + K  PE+ R STPT 
Sbjct: 75  DNTLLSEGSSSVLELNHFAFNTTTHDGALDATIRRGSLAVVDGKLAKAHPEAVRFSTPTT 134

Query: 148 TIGIRGTDFIVEVA 161
           T+G+RGT+FI+EV 
Sbjct: 135 TLGVRGTEFIIEVG 148


>ref|YP_285207.1| hypothetical protein Daro_1991 [Dechloromonas aromatica RCB]
 gb|AAZ46737.1| conserved hypothetical protein [Dechloromonas aromatica RCB]
          Length = 143

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 59/132 (44%), Positives = 84/132 (63%)

Query: 31  AAAQEATASQAGIVKVLQGDVRAERSGKTRPLATGERLYAGDRVLTGAASAVGFTLRDDT 90
           A+     A QAG++KV  G V  ER GK      G  +   DR+ T A  +VG TLRD+T
Sbjct: 8   ASLPAMAAEQAGMIKVSMGLVNIERDGKKLAAEVGTPVLVADRIRTAADGSVGVTLRDNT 67

Query: 91  LISLGSNSQFLLEQFAYNDKTDEGSVAVRLTKGTLRYVSGLIGKHSPESQRLSTPTATIG 150
           L+S G NS  ++++FA+++ T +G+++V + KGTL   SG I K +PES    TPT+ +G
Sbjct: 68  LLSAGPNSLIIIDRFAFDNTTQDGNMSVSIRKGTLSVASGKIAKRTPESVDFHTPTSVLG 127

Query: 151 IRGTDFIVEVAG 162
           +RGT+FIVEV G
Sbjct: 128 VRGTEFIVEVLG 139


>ref|YP_004473332.1| hypothetical protein Psefu_1261 [Pseudomonas fulva 12-X]
 gb|AEF21238.1| hypothetical protein Psefu_1261 [Pseudomonas fulva 12-X]
          Length = 148

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 57/145 (39%), Positives = 85/145 (58%), Gaps = 8/145 (5%)

Query: 16  AGVLLASASLLGQGSAAAQEATASQAGIVKVLQGDVRAERSGKTRPLATGERLYAGDRVL 75
           AGVLLA++    +          S  G V  +QG+    R G T P   G  LY G  V 
Sbjct: 11  AGVLLATSLFAAE--------PGSSIGYVMKVQGEASVTRDGATVPATIGTPLYVGSTVK 62

Query: 76  TGAASAVGFTLRDDTLISLGSNSQFLLEQFAYNDKTDEGSVAVRLTKGTLRYVSGLIGKH 135
           TG A ++G TL D+T++S G NS+  L++F ++   D+  ++ ++T GTL Y+SG I K 
Sbjct: 63  TGPAGSMGVTLEDNTVMSFGPNSELTLDEFIFDPAQDDLKLSAKITHGTLDYISGTIAKL 122

Query: 136 SPESQRLSTPTATIGIRGTDFIVEV 160
            P++  ++TPT TIG+RGT F+V+V
Sbjct: 123 KPQAVEINTPTGTIGVRGTHFLVKV 147


>ref|YP_285115.1| hypothetical protein Daro_1899 [Dechloromonas aromatica RCB]
 gb|AAZ46645.1| conserved hypothetical protein [Dechloromonas aromatica RCB]
          Length = 147

 Score =  102 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 54/130 (41%), Positives = 81/130 (62%)

Query: 31  AAAQEATASQAGIVKVLQGDVRAERSGKTRPLATGERLYAGDRVLTGAASAVGFTLRDDT 90
           A+A   ++   G ++ LQG    +R+G T P A G  L   D++ TG  +AVG  L DDT
Sbjct: 16  ASAFAESSETVGHIQTLQGQAFIQRAGTTLPAAIGAELRKSDQIRTGKPAAVGIVLTDDT 75

Query: 91  LISLGSNSQFLLEQFAYNDKTDEGSVAVRLTKGTLRYVSGLIGKHSPESQRLSTPTATIG 150
            ISLGSNS+  L  +A+  K  + ++++++ KGT  Y++G I K SP+S R+ TP ATI 
Sbjct: 76  TISLGSNSELSLSDYAFEPKQSKFALSLKMIKGTFSYITGQIVKLSPDSARIQTPDATIA 135

Query: 151 IRGTDFIVEV 160
           +RGT  +VE+
Sbjct: 136 VRGTKLLVEI 145