BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4389.p (194 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774711.1| OmpA protein [Herbaspirillum seropedicae SmR... 270 9e-71 ref|YP_285208.1| OmpA/MotB [Dechloromonas aromatica RCB] >gi|718... 129 3e-28 ref|YP_004157566.1| ompa/motb domain-containing protein [Variovo... 115 3e-24 emb|CAM77052.1| conserved hypothetical protein, secreted [Magnet... 106 2e-21 ref|YP_002946542.1| OmpA/MotB domain-containing protein [Variovo... 102 4e-20 >ref|YP_003774711.1| OmpA protein [Herbaspirillum seropedicae SmR1] gb|ADJ62803.1| OmpA protein [Herbaspirillum seropedicae SmR1] Length = 190 Score = 270 bits (690), Expect = 9e-71, Method: Composition-based stats. Identities = 153/190 (80%), Positives = 173/190 (91%) Query: 5 LLAVVALLAACAGPAERFVLLPQADGSASSIVVKTASGETALTSPYAAVETRGGKPAPTQ 64 + A+ LLA CAGP ERF+LLPQ DGSASSIVVKTA+GETAL +PYA+VET GGK T Sbjct: 1 MAALAVLLAGCAGPRERFLLLPQPDGSASSIVVKTATGETALATPYASVETAGGKVDKTL 60 Query: 65 TLSAAEVDRRYAEVMRSLPARPRSYDLLFELGTDRLTPASQELLKKAIAEIKEFPAGEFI 124 T++ A+V++RYA+V+ SLPARPRSYDLLFELGTDRLTPASQ+ LKKAIAEIK+FPAGEF+ Sbjct: 61 TVAPADVEKRYADVLGSLPARPRSYDLLFELGTDRLTPASQDALKKAIAEIKDFPAGEFV 120 Query: 125 LTGHADSIGSDATNDALSLRRARLIERELQRAEVKALSIEVIGKGARDPRVPQKRGVAEP 184 LTGHAD+IGS+ NDALSLRRARLIEREL+RA+VKALSIEVIGKGARDPRVPQKRGVAEP Sbjct: 121 LTGHADNIGSETNNDALSLRRARLIERELRRADVKALSIEVIGKGARDPRVPQKRGVAEP 180 Query: 185 RNRFVEIKIR 194 RNRFVEIKIR Sbjct: 181 RNRFVEIKIR 190 >ref|YP_285208.1| OmpA/MotB [Dechloromonas aromatica RCB] gb|AAZ46738.1| OmpA/MotB [Dechloromonas aromatica RCB] Length = 195 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 86/192 (44%), Positives = 110/192 (57%), Gaps = 3/192 (1%) Query: 3 CALLAVVALLAACAGPAERFVLLPQADGSASSIVVKTASGETALTSPYAAVETRGGKPAP 62 C LA +L+AC ER VLLP ADG S++VV+ +GE L PYAAV+ R Sbjct: 7 CVALAGSLVLSACT--TERVVLLPSADGGQSAVVVRDPAGEVLLNQPYAAVKRRLDSNVG 64 Query: 63 TQTLSAAEVDRRYAEVMRSLPARPRSYDLLFELGTDRLTPASQELLKKAIAEIKEFPAGE 122 Q+ S EV RYA V+ + PARPRSY L FE G + LT S+ L EI E A E Sbjct: 65 YQS-SPEEVRERYANVLAAQPARPRSYVLYFEAGGNILTQESKAALVNIRKEIAERAASE 123 Query: 123 FILTGHADSIGSDATNDALSLRRARLIERELQRAEVKALSIEVIGKGARDPRVPQKRGVA 182 ++ GH D +GS ND LSL+RA + L + + A +E +G+G RDP VP V Sbjct: 124 VMVIGHTDRVGSVEGNDKLSLQRAEGLRDLLIESGISAEKMEAVGRGERDPLVPTADEVD 183 Query: 183 EPRNRFVEIKIR 194 EP+NR VEI +R Sbjct: 184 EPKNRRVEINVR 195 >ref|YP_004157566.1| ompa/motb domain-containing protein [Variovorax paradoxus EPS] gb|ADU39455.1| OmpA/MotB domain protein [Variovorax paradoxus EPS] Length = 207 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 75/189 (39%), Positives = 105/189 (55%), Gaps = 2/189 (1%) Query: 8 VVALLAACAGPAERFVLLPQADGSASSIVVKTASGETALTSPYA-AVETRGGKPAPT-QT 65 + ALLAAC+ P R VLLPQADG S++VV+ GE L+ PY A G AP Sbjct: 19 ITALLAACSTPGTRVVLLPQADGKPSAVVVRAKDGEEVLSKPYQRATAAVGASGAPVVDQ 78 Query: 66 LSAAEVDRRYAEVMRSLPARPRSYDLLFELGTDRLTPASQELLKKAIAEIKEFPAGEFIL 125 AA+V + P P+ Y + FE+G LTPASQ+++ +A+A G+ ++ Sbjct: 79 ADAAKVQAENKPLFDMRPPPPQRYTVFFEVGGTTLTPASQQIMTEALAAALARSGGDIVV 138 Query: 126 TGHADSIGSDATNDALSLRRARLIERELQRAEVKALSIEVIGKGARDPRVPQKRGVAEPR 185 TGH D+ G+ +ND LS RRA+ + + A +E +G+G RD VP V EPR Sbjct: 139 TGHTDTKGNGESNDQLSRRRAQEVVQLFVEQRFPANRVEAVGRGERDLAVPTADEVDEPR 198 Query: 186 NRFVEIKIR 194 NR V I++R Sbjct: 199 NRRVTIEVR 207 >emb|CAM77052.1| conserved hypothetical protein, secreted [Magnetospirillum gryphiswaldense MSR-1] Length = 196 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 69/194 (35%), Positives = 107/194 (55%), Gaps = 2/194 (1%) Query: 2 RCALLAVVALLAACAGPAERFVLLPQADGSASSIVVKTASGETALTS-PYAAVETRGGKP 60 R +A++ AACA P VL+P ADG I V+ A G L A++ + G KP Sbjct: 4 RVFAMALLVATAACA-PQSTVVLIPDADGHVGRIQVEGAGGAVLLEQLNTASIASAGEKP 62 Query: 61 APTQTLSAAEVDRRYAEVMRSLPARPRSYDLLFELGTDRLTPASQELLKKAIAEIKEFPA 120 +P + L A + + +A+ + ++P RP ++ L F GT L P + EL+ +A+ K+ P Sbjct: 63 SPAKPLDEARIKQTWADALAAMPDRPVTFQLYFSSGTADLLPEAAELVVQAVDLAKKRPH 122 Query: 121 GEFILTGHADSIGSDATNDALSLRRARLIERELQRAEVKALSIEVIGKGARDPRVPQKRG 180 ++ GHAD++GSD ND +S RRA ++ + + +I G R+P VP K G Sbjct: 123 VFIMIAGHADAVGSDEVNDRISRRRAEVVRNLVVERGLPPRAIVASSHGKRNPLVPTKDG 182 Query: 181 VAEPRNRFVEIKIR 194 VAEPRNR V + ++ Sbjct: 183 VAEPRNRRVTLTLQ 196 >ref|YP_002946542.1| OmpA/MotB domain-containing protein [Variovorax paradoxus S110] gb|ACS21276.1| OmpA/MotB domain protein [Variovorax paradoxus S110] Length = 205 Score = 102 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 66/184 (35%), Positives = 98/184 (53%), Gaps = 6/184 (3%) Query: 15 CAGPAERFVLLPQADGSASSIVVKTASGETALTSPY----AAVETRGGKPAPTQTLSAAE 70 C+ P R VLLPQAD S+++V+ GE L+ PY AAV G + + Sbjct: 24 CSTPGTRVVLLPQADDKPSAVIVRAKDGEEVLSKPYQRATAAVGASGAPVVDQADPAKVQ 83 Query: 71 VDRRYAEVMRSLPARPRSYDLLFELGTDRLTPASQELLKKAIAEIKEFPAGEFILTGHAD 130 D + MR P P+ Y + FE+G LTPASQ+++ +A+ + + ++TGH D Sbjct: 84 ADHKILFDMR--PPAPQRYTVYFEVGGTTLTPASQQVMNEALMAAQSRSGSDIVVTGHTD 141 Query: 131 SIGSDATNDALSLRRARLIERELQRAEVKALSIEVIGKGARDPRVPQKRGVAEPRNRFVE 190 + G+ ND LS RRA+ + + + A IE +G+G R+ VP V EPRNR V Sbjct: 142 TKGALEQNDMLSQRRAQEVAQLFVERQFPAKRIEAVGRGERELAVPTADEVDEPRNRRVT 201 Query: 191 IKIR 194 I++R Sbjct: 202 IEVR 205