BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4383.p         (82 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777841.1| hypothetical protein Hsero_4467 [Herbaspiril...   112   2e-23
ref|YP_001100508.1| hypothetical protein HEAR2252 [Herminiimonas...    95   4e-18
ref|YP_988324.1| hypothetical protein Ajs_4147 [Acidovorax sp. J...    85   4e-15
ref|ZP_07043185.1| hypothetical protein CTS44_03216 [Comamonas t...    79   2e-13
ref|YP_002551493.1| hypothetical protein Dtpsy_0004 [Acidovorax ...    79   2e-13

>ref|YP_003777841.1| hypothetical protein Hsero_4467 [Herbaspirillum seropedicae SmR1]
 gb|ADJ65933.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 192

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/81 (72%), Positives = 69/81 (85%)

Query: 1   MVDIMDWVPIVFIIFKVAVLGIGMFYAIKWHYDQGKKGKQAERNAVLRASGKVAALFVIS 60
           ++DIMDWVPI+F+ FKV VL  GMFYAIKWHYDQGKKG+  ER AVLRASG+V  +FV+S
Sbjct: 111 IIDIMDWVPILFVTFKVIVLCTGMFYAIKWHYDQGKKGRINERRAVLRASGQVVLIFVLS 170

Query: 61  LLVLGVATFFISRMMGLELSF 81
           LL+LGVATFF+S M GLEL F
Sbjct: 171 LLLLGVATFFVSEMFGLELIF 191


>ref|YP_001100508.1| hypothetical protein HEAR2252 [Herminiimonas arsenicoxydans]
 emb|CAL62386.1| Conserved hypothetical protein; putative membrane protein
          [Herminiimonas arsenicoxydans]
          Length = 89

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 49/81 (60%), Positives = 63/81 (77%)

Query: 1  MVDIMDWVPIVFIIFKVAVLGIGMFYAIKWHYDQGKKGKQAERNAVLRASGKVAALFVIS 60
          ++ +MDW  IVF+ FKV VLG GMF+AIKWHYDQGKK K  E+ AVLRA GKVA +FV+S
Sbjct: 8  ILKMMDWTLIVFVTFKVLVLGTGMFFAIKWHYDQGKKDKDKEKRAVLRAGGKVAVVFVLS 67

Query: 61 LLVLGVATFFISRMMGLELSF 81
          LL L + TF ++  +GL+L+F
Sbjct: 68 LLCLALVTFVLASKLGLDLNF 88


>ref|YP_988324.1| hypothetical protein Ajs_4147 [Acidovorax sp. JS42]
 gb|ABM44248.1| hypothetical protein Ajs_4147 [Acidovorax sp. JS42]
          Length = 101

 Score = 85.1 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/76 (55%), Positives = 60/76 (78%), Gaps = 2/76 (2%)

Query: 4  IMDWVPIVFIIFKVAVLGIGMFYAIKWHYDQGKKGKQAERNAVLRASGKVAALFVISLLV 63
          ++DWVP+VFI FKV V G  MF+AIKWHYDQG KG   ++ A+LR SGKV A+F+++LL 
Sbjct: 25 MIDWVPVVFITFKVLVFGTCMFFAIKWHYDQGNKG--TDKRALLRTSGKVVAVFMLALLA 82

Query: 64 LGVATFFISRMMGLEL 79
          + + TF +S+M+G++L
Sbjct: 83 VLLFTFGLSKMLGMDL 98


>ref|ZP_07043185.1| hypothetical protein CTS44_03216 [Comamonas testosteroni S44]
 gb|EFI63190.1| hypothetical protein CTS44_03216 [Comamonas testosteroni S44]
          Length = 77

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/78 (53%), Positives = 60/78 (76%), Gaps = 2/78 (2%)

Query: 4  IMDWVPIVFIIFKVAVLGIGMFYAIKWHYDQGKKGKQAERNAVLRASGKVAALFVISLLV 63
          ++DWVP++F+ FKV + G  MF+AIKWHYDQGKKG   +R A+LR  GKVAA F++ LL 
Sbjct: 1  MIDWVPVIFVTFKVLIFGACMFFAIKWHYDQGKKG--MDRRALLRTGGKVAAAFMLGLLF 58

Query: 64 LGVATFFISRMMGLELSF 81
          + + TF ++RM+G++LS 
Sbjct: 59 VLLFTFGLARMLGMDLSL 76


>ref|YP_002551493.1| hypothetical protein Dtpsy_0004 [Acidovorax ebreus TPSY]
 gb|ACM31493.1| conserved hypothetical protein [Acidovorax ebreus TPSY]
          Length = 77

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/76 (55%), Positives = 59/76 (77%), Gaps = 2/76 (2%)

Query: 4  IMDWVPIVFIIFKVAVLGIGMFYAIKWHYDQGKKGKQAERNAVLRASGKVAALFVISLLV 63
          ++DWVP+VFI FKV V G  MF+AIKWHYDQG KG   ++ A+LR SGKV A+F+ +LL 
Sbjct: 1  MIDWVPVVFITFKVLVFGTCMFFAIKWHYDQGNKG--TDKRALLRTSGKVVAVFMAALLA 58

Query: 64 LGVATFFISRMMGLEL 79
          + + TF +S+M+G++L
Sbjct: 59 VLLFTFGLSKMLGMDL 74