BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4381.p (444 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EGP45687.1| sensory box protein 9 [Achromobacter xylosoxidans... 436 e-120 gb|EFV82942.1| methyl-accepting chemotaxis sensory transducer wi... 430 e-118 gb|EGP47971.1| sensory box protein 9 [Achromobacter xylosoxidans... 424 e-116 ref|YP_001566413.1| Pas/Pac sensor-containing methyl-accepting c... 419 e-115 ref|YP_004486598.1| methyl-accepting chemotaxis sensory transduc... 417 e-114 >gb|EGP45687.1| sensory box protein 9 [Achromobacter xylosoxidans AXX-A] Length = 484 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 231/431 (53%), Positives = 304/431 (70%), Gaps = 4/431 (0%) Query: 9 FLSRFSKRKADMLGQLAAINKALAVIEFTLDGKIIKANKNFLDLMGYTLEEIKGQHHRIF 68 F + R AD+ GQ+AAI+KA AVIEF LDG ++ AN+NFLD MGYTL+E+ GQHHR+F Sbjct: 11 FRRQRDTRNADLHGQIAAIHKAQAVIEFDLDGHVLMANQNFLDAMGYTLDELLGQHHRLF 70 Query: 69 VAEEERNAPAYAQFWQKLGRGEYDQRLYRRITKSGHEVWIQATYNPIIDALGRPFKIVKY 128 VA + R+ P Y FW KL RGEYD YRRI K G +VW+QA+YNPI D GRPFK+VKY Sbjct: 71 VAPDRRDTPQYCAFWDKLKRGEYDAGRYRRIHKDGSDVWLQASYNPIFDQQGRPFKVVKY 130 Query: 129 ARDVTQQQLQAADFSGQITAINKVRAVIEFDVNGNILHANNNFLRAVGYSLSEIVGKHHA 188 A DVT+QQ + AD GQ+ AI+KV+ +IEFD++GNIL AN+ FL A+GY E+ G+HH+ Sbjct: 131 ATDVTEQQRRQADTEGQLAAISKVQGIIEFDLDGNILRANDLFLDAMGYREDELRGRHHS 190 Query: 189 IFVEPAERASAQYQEFWKRLAAGQYDAGLYRRVKKNGDALWLQANYNPIFDMDGRVFKVV 248 + V P E S Y+EFW++L G+YD G Y R+ KNG +W++A+YNPIFD +GR FKVV Sbjct: 191 MLVLPEETRSPAYKEFWRKLRGGEYDTGQYLRIGKNGRRVWIEASYNPIFDAEGRPFKVV 250 Query: 249 KYATDVSIQTHATQTLQAAVGGLSQALSTGSASAQQANDLVKATSSIAEQGGVVMQEVVN 308 K+ATD++ + A QTL+ AV GL++ + A QAN L + IAE+GG + VV Sbjct: 251 KFATDITKRFTAAQTLRVAVQGLTE----NAERAGQANTLARDACLIAEEGGKTVAGVVA 306 Query: 309 KMAAINASAAKITEIIGVIDEITFRTNLLALNAAVEAARAGEHGRGFAVVAGEVRSLAQR 368 M AI S+ +I+EIIGV+D I F+TN+LALNAAVEAARAG HG+GFAVVA EVRSLAQ Sbjct: 307 TMGAITDSSRRISEIIGVMDGIAFQTNILALNAAVEAARAGPHGKGFAVVAAEVRSLAQN 366 Query: 369 TAASASEIKTLIGGSVNEARQGTELVMNAGKTMSTMVNSINDITGIIETISTSANDQINE 428 +A++A EIK LI SV + G E V +AG TM +V S +T I+ + + Q + Sbjct: 367 SASAAKEIKDLITTSVQQIGNGAEQVQSAGATMENIVTSSRRVTEIMGEVVEVSLAQSAK 426 Query: 429 IEQVNEAVTQL 439 + +V E +TQ+ Sbjct: 427 LGEVTEDITQM 437 >gb|EFV82942.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor [Achromobacter xylosoxidans C54] Length = 483 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 226/431 (52%), Positives = 303/431 (70%), Gaps = 4/431 (0%) Query: 9 FLSRFSKRKADMLGQLAAINKALAVIEFTLDGKIIKANKNFLDLMGYTLEEIKGQHHRIF 68 F + R AD+ GQ+AAI+KA A+IEF LDG ++ AN+NFLD MGYTL+E+ GQHHRIF Sbjct: 10 FRRKRDTRSADLYGQIAAIHKAQAIIEFDLDGHVLMANQNFLDAMGYTLDELLGQHHRIF 69 Query: 69 VAEEERNAPAYAQFWQKLGRGEYDQRLYRRITKSGHEVWIQATYNPIIDALGRPFKIVKY 128 VA + R +P Y FW KL RGEYD YRRI K G +VW+QA+YNPI+D GRPFK+VKY Sbjct: 70 VAPDRRGSPEYQAFWDKLKRGEYDAGRYRRIHKDGSDVWLQASYNPILDESGRPFKVVKY 129 Query: 129 ARDVTQQQLQAADFSGQITAINKVRAVIEFDVNGNILHANNNFLRAVGYSLSEIVGKHHA 188 A DVT+QQ + AD GQ+ AI+KV+ +IEF+++G I+ AN+ FL A+GY E+ G+HH+ Sbjct: 130 ATDVTEQQRRQADTEGQLAAISKVQGIIEFELDGTIIRANDLFLDAMGYREDELRGRHHS 189 Query: 189 IFVEPAERASAQYQEFWKRLAAGQYDAGLYRRVKKNGDALWLQANYNPIFDMDGRVFKVV 248 + V P E Y+EFW++L G+YD G Y R+ KNG +W++A+YNPIFD +GR FKVV Sbjct: 190 MLVLPEEVRGPAYKEFWRKLRGGEYDTGQYLRIGKNGRRVWIEASYNPIFDAEGRPFKVV 249 Query: 249 KYATDVSIQTHATQTLQAAVGGLSQALSTGSASAQQANDLVKATSSIAEQGGVVMQEVVN 308 K+ATD++ + A QTL+ AV GL++ + A QAN L + +AE+GG + VV Sbjct: 250 KFATDITRRFTAAQTLRVAVQGLTE----NAERASQANTLARDACQVAEEGGKTVAGVVA 305 Query: 309 KMAAINASAAKITEIIGVIDEITFRTNLLALNAAVEAARAGEHGRGFAVVAGEVRSLAQR 368 M AI S+ +I+EIIGV+D I F+TN+LALNAAVEAARAG HG+GFAVVA EVRSLAQ Sbjct: 306 TMGAITDSSKRISEIIGVMDGIAFQTNILALNAAVEAARAGPHGKGFAVVAAEVRSLAQN 365 Query: 369 TAASASEIKTLIGGSVNEARQGTELVMNAGKTMSTMVNSINDITGIIETISTSANDQINE 428 +A++A EIK LI SV + G E V +AG TM +V S +T I+ + + Q + Sbjct: 366 SASAAKEIKDLITTSVQQIGNGAEQVQSAGATMENIVTSSRRVTEIMGEVVEVSLAQSAK 425 Query: 429 IEQVNEAVTQL 439 + +V E +TQ+ Sbjct: 426 LGEVTEDITQM 436 >gb|EGP47971.1| sensory box protein 9 [Achromobacter xylosoxidans AXX-A] Length = 489 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 222/424 (52%), Positives = 301/424 (70%), Gaps = 4/424 (0%) Query: 16 RKADMLGQLAAINKALAVIEFTLDGKIIKANKNFLDLMGYTLEEIKGQHHRIFVAEEERN 75 +KAD+ GQ+AAI+KA AVIEF L+G ++ AN+NFLD MGY L+E+ GQHHR+FV E+R Sbjct: 17 QKADLYGQIAAIHKAQAVIEFDLEGHVLMANQNFLDTMGYELDEVLGQHHRMFVVPEDRE 76 Query: 76 APAYAQFWQKLGRGEYDQRLYRRITKSGHEVWIQATYNPIIDALGRPFKIVKYARDVTQQ 135 + Y FW KLG+G +D YRRI + G +VW+QA+YNPI D GRPFK+VKYA D+T+Q Sbjct: 77 SAEYLAFWDKLGQGAHDAGRYRRIRRDGSDVWLQASYNPIFDKHGRPFKVVKYATDITEQ 136 Query: 136 QLQAADFSGQITAINKVRAVIEFDVNGNILHANNNFLRAVGYSLSEIVGKHHAIFVEPAE 195 Q + AD GQ+ AI+KV+A+IEF+++G I+ AN+ FL AVGY E+ G+HH++FV P E Sbjct: 137 QQRQADTEGQLEAISKVQAIIEFELDGTIIRANDLFLNAVGYHEDEVRGRHHSMFVLPEE 196 Query: 196 RASAQYQEFWKRLAAGQYDAGLYRRVKKNGDALWLQANYNPIFDMDGRVFKVVKYATDVS 255 S Y EFW++L +GQ+D G Y R+ KNG +W++A+YNPIFD +GR FKVVK+ATD++ Sbjct: 197 ARSGAYAEFWRKLRSGQHDTGQYLRIGKNGRHVWIEASYNPIFDAEGRPFKVVKFATDIT 256 Query: 256 IQTHATQTLQAAVGGLSQALSTGSASAQQANDLVKATSSIAEQGGVVMQEVVNKMAAINA 315 + A QTL+ AV GL++ + A QAN L + +AE+GG + VV M AI Sbjct: 257 KRFTAAQTLRVAVQGLTE----NAERASQANSLAQDACRVAEEGGKTVAGVVRTMGAITD 312 Query: 316 SAAKITEIIGVIDEITFRTNLLALNAAVEAARAGEHGRGFAVVAGEVRSLAQRTAASASE 375 S+ +I+EIIGV+D I F+TN+LALNAAVEAARAG HG+GFAVVA EVRSLAQ +AA+A E Sbjct: 313 SSKRISEIIGVMDGIAFQTNILALNAAVEAARAGVHGKGFAVVAAEVRSLAQNSAAAAKE 372 Query: 376 IKTLIGGSVNEARQGTELVMNAGKTMSTMVNSINDITGIIETISTSANDQINEIEQVNEA 435 IK LI SV + G V +AG TM +V S +T I+ + + Q ++ +V E Sbjct: 373 IKGLITTSVEQIGSGARQVQSAGTTMEDIVASSRRVTEIMGEVVEVSLAQSAKLGEVTED 432 Query: 436 VTQL 439 +TQ+ Sbjct: 433 ITQM 436 Score = 151 bits (381), Expect = 3e-34, Method: Composition-based stats. Identities = 76/147 (51%), Positives = 103/147 (70%), Gaps = 4/147 (2%) Query: 134 QQQLQAADFSGQITAINKVRAVIEFDVNGNILHANNNFLRAVGYSLSEIVGKHHAIFVEP 193 ++ +Q AD GQI AI+K +AVIEFD+ G++L AN NFL +GY L E++G+HH +FV P Sbjct: 13 ERGMQKADLYGQIAAIHKAQAVIEFDLEGHVLMANQNFLDTMGYELDEVLGQHHRMFVVP 72 Query: 194 AERASAQYQEFWKRLAAGQYDAGLYRRVKKNGDALWLQANYNPIFDMDGRVFKVVKYATD 253 +R SA+Y FW +L G +DAG YRR++++G +WLQA+YNPIFD GR FKVVKYATD Sbjct: 73 EDRESAEYLAFWDKLGQGAHDAGRYRRIRRDGSDVWLQASYNPIFDKHGRPFKVVKYATD 132 Query: 254 VSIQTHATQTLQAAVGGLSQALSTGSA 280 ++ Q Q QA G +A+S A Sbjct: 133 ITEQ----QQRQADTEGQLEAISKVQA 155 Score = 138 bits (347), Expect = 3e-30, Method: Composition-based stats. Identities = 103/318 (32%), Positives = 158/318 (49%), Gaps = 35/318 (11%) Query: 15 KRKADMLGQLAAINKALAVIEFTLDGKIIKANKNFLDLMGYTLEEIKGQHHRIFVAEEER 74 +R+AD GQL AI+K A+IEF LDG II+AN FL+ +GY +E++G+HH +FV EE Sbjct: 138 QRQADTEGQLEAISKVQAIIEFELDGTIIRANDLFLNAVGYHEDEVRGRHHSMFVLPEEA 197 Query: 75 NAPAYAQFWQKLGRGEYDQRLYRRITKSGHEVWIQATYNPIIDALGRPFKIVKYARDVTQ 134 + AYA+FW+KL G++D Y RI K+G VWI+A+YNPI DA GRPFK+VK+A D+T+ Sbjct: 198 RSGAYAEFWRKLRSGQHDTGQYLRIGKNGRHVWIEASYNPIFDAEGRPFKVVKFATDITK 257 Query: 135 QQLQAADFSGQITAINKVRAVIEFDVNGNILHANNNFLRAVGYSLSEIVGKHHAIFVEPA 194 + TA +R ++ + N L ++E GK A V Sbjct: 258 ----------RFTAAQTLRVAVQGLTENAERASQANSLAQDACRVAEEGGKTVAGVV--- 304 Query: 195 ERASAQYQEFWKRLAAGQYDAGLYRRVKKNGDALWLQANYNPIFDMDGRVFKVVKYATDV 254 R + KR++ + D + Q N I ++ V A Sbjct: 305 -RTMGAITDSSKRIS----------EIIGVMDGIAFQTN---ILALNAAV-----EAARA 345 Query: 255 SIQTHATQTLQAAVGGLSQALSTGSASAQQANDLVKATSSIAEQGGVVMQEVVNKMAAIN 314 + + A V L+Q +A+A++ L+ + G +Q M I Sbjct: 346 GVHGKGFAVVAAEVRSLAQ---NSAAAAKEIKGLITTSVEQIGSGARQVQSAGTTMEDIV 402 Query: 315 ASAAKITEIIGVIDEITF 332 AS+ ++TEI+G + E++ Sbjct: 403 ASSRRVTEIMGEVVEVSL 420 >ref|YP_001566413.1| Pas/Pac sensor-containing methyl-accepting chemotaxis sensory transducer [Delftia acidovorans SPH-1] gb|ABX38028.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor [Delftia acidovorans SPH-1] Length = 488 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 227/422 (53%), Positives = 308/422 (72%), Gaps = 4/422 (0%) Query: 16 RKADMLGQLAAINKALAVIEFTLDGKIIKANKNFLDLMGYTLEEIKGQHHRIFVAEEERN 75 R+A++ GQLAAI+K+ AVIEF L G ++ AN+NFLD MGY E+ GQHHR+FV + Sbjct: 17 RQAELDGQLAAIHKSQAVIEFDLQGHVLAANQNFLDTMGYEEGEVIGQHHRMFVDHQMSE 76 Query: 76 APAYAQFWQKLGRGEYDQRLYRRITKSGHEVWIQATYNPIIDALGRPFKIVKYARDVTQQ 135 +P YA FWQ+LG G +D YRRI K G +VW+QA+YNPI D GRPFK+VKYA D+T+Q Sbjct: 77 SPEYAAFWQRLGNGIHDAGRYRRIAKDGRDVWLQASYNPIFDRHGRPFKVVKYATDITEQ 136 Query: 136 QLQAADFSGQITAINKVRAVIEFDVNGNILHANNNFLRAVGYSLSEIVGKHHAIFVEPAE 195 Q + AD GQ+ AI+KV+A+IEFD+ GNILHAN FL+A+GY+L E+VG+HH++FV+P E Sbjct: 137 QRRNADAEGQLAAISKVQAIIEFDLQGNILHANRLFLQAMGYTLDEVVGRHHSMFVQPHE 196 Query: 196 RASAQYQEFWKRLAAGQYDAGLYRRVKKNGDALWLQANYNPIFDMDGRVFKVVKYATDVS 255 R S +Y +FW++LA+GQ+DAG Y R+ K+G +W++A+YNPI D DGR FKVVKYA D++ Sbjct: 197 RHSPEYAQFWRKLASGQHDAGQYLRIGKHGRQVWIEASYNPILDADGRPFKVVKYARDIT 256 Query: 256 IQTHATQTLQAAVGGLSQALSTGSASAQQANDLVKATSSIAEQGGVVMQEVVNKMAAINA 315 + A QTL A+ GLS++ + A QAN+L + +AEQGG + EV+ M +I+A Sbjct: 257 RRFTAAQTLGEAMQGLSES----AEHAGQANELARQACLVAEQGGRTVHEVMGTMESISA 312 Query: 316 SAAKITEIIGVIDEITFRTNLLALNAAVEAARAGEHGRGFAVVAGEVRSLAQRTAASASE 375 S+ KI++IIGV+D I F+TN+LALNAAVEAARAGE GRGFAVVAGEVR+LAQ +AA+A E Sbjct: 313 SSRKISDIIGVMDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRALAQNSAAAAKE 372 Query: 376 IKTLIGGSVNEARQGTELVMNAGKTMSTMVNSINDITGIIETISTSANDQINEIEQVNEA 435 IK LI SV + G V AG TM +V+S + +T I+ + ++ Q + +V Sbjct: 373 IKQLIHTSVEQVALGANQVRQAGGTMQEIVDSSHQVTAIMGDVVQASMAQSARLREVTAD 432 Query: 436 VT 437 +T Sbjct: 433 LT 434 Score = 147 bits (372), Expect = 3e-33, Method: Composition-based stats. Identities = 71/121 (58%), Positives = 93/121 (76%) Query: 15 KRKADMLGQLAAINKALAVIEFTLDGKIIKANKNFLDLMGYTLEEIKGQHHRIFVAEEER 74 +R AD GQLAAI+K A+IEF L G I+ AN+ FL MGYTL+E+ G+HH +FV ER Sbjct: 138 RRNADAEGQLAAISKVQAIIEFDLQGNILHANRLFLQAMGYTLDEVVGRHHSMFVQPHER 197 Query: 75 NAPAYAQFWQKLGRGEYDQRLYRRITKSGHEVWIQATYNPIIDALGRPFKIVKYARDVTQ 134 ++P YAQFW+KL G++D Y RI K G +VWI+A+YNPI+DA GRPFK+VKYARD+T+ Sbjct: 198 HSPEYAQFWRKLASGQHDAGQYLRIGKHGRQVWIEASYNPILDADGRPFKVVKYARDITR 257 Query: 135 Q 135 + Sbjct: 258 R 258 >ref|YP_004486598.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor [Delftia sp. Cs1-4] gb|AEF88243.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor [Delftia sp. Cs1-4] Length = 488 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 225/424 (53%), Positives = 308/424 (72%), Gaps = 4/424 (0%) Query: 14 SKRKADMLGQLAAINKALAVIEFTLDGKIIKANKNFLDLMGYTLEEIKGQHHRIFVAEEE 73 ++R+A++ GQLAAI+K+ AVIEF L G ++ AN+NFLD MGY E+ GQHHR+FV + Sbjct: 15 ARRQAELDGQLAAIHKSQAVIEFDLQGHVLAANQNFLDTMGYEEGEVIGQHHRMFVDHQM 74 Query: 74 RNAPAYAQFWQKLGRGEYDQRLYRRITKSGHEVWIQATYNPIIDALGRPFKIVKYARDVT 133 +P Y FWQ+LG G +D YRRI K G +VW+QA+YNPI D GRPFK+VKYA D+T Sbjct: 75 SESPEYTAFWQRLGSGIHDAGRYRRIAKDGRDVWLQASYNPIFDRHGRPFKVVKYATDIT 134 Query: 134 QQQLQAADFSGQITAINKVRAVIEFDVNGNILHANNNFLRAVGYSLSEIVGKHHAIFVEP 193 +QQ + AD GQ+ AI+KV+A+IEFD+ GNILHAN FL+A+GY+L E+ G+HH++FV+P Sbjct: 135 EQQRRNADAEGQLAAISKVQAIIEFDLQGNILHANRLFLQAMGYTLDEVTGRHHSMFVQP 194 Query: 194 AERASAQYQEFWKRLAAGQYDAGLYRRVKKNGDALWLQANYNPIFDMDGRVFKVVKYATD 253 ER S +Y +FW++LA+GQ+DAG Y R+ K+G +W++A+YNPI D DGR FKVVKYA D Sbjct: 195 HERHSPEYAQFWRKLASGQHDAGQYLRIGKHGRQVWIEASYNPILDADGRPFKVVKYARD 254 Query: 254 VSIQTHATQTLQAAVGGLSQALSTGSASAQQANDLVKATSSIAEQGGVVMQEVVNKMAAI 313 ++ + A QTL A+ GLS++ + A QAN+L + +AEQGG + EV+ M +I Sbjct: 255 ITRRFTAAQTLGEAMQGLSES----AEHAGQANELARQACLVAEQGGRTVHEVMGTMESI 310 Query: 314 NASAAKITEIIGVIDEITFRTNLLALNAAVEAARAGEHGRGFAVVAGEVRSLAQRTAASA 373 +AS+ KI++IIGV+D I F+TN+LALNAAVEAARAGE GRGFAVVAGEVR+LAQ +AA+A Sbjct: 311 SASSRKISDIIGVMDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRALAQNSAAAA 370 Query: 374 SEIKTLIGGSVNEARQGTELVMNAGKTMSTMVNSINDITGIIETISTSANDQINEIEQVN 433 EIK LI SV + G V AG TM +V+S + +T I+ + ++ Q + +V Sbjct: 371 KEIKQLIHTSVEQVALGANQVRQAGGTMQEIVDSSHQVTAIMGDVVQASMAQSARLREVT 430 Query: 434 EAVT 437 +T Sbjct: 431 ADLT 434