BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4379.p         (107 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_06689307.1| conserved hypothetical protein [Achromobacter...   136   1e-30
ref|ZP_03541577.1| DNA/RNA non-specific endonuclease [Comamonas ...   133   1e-29
ref|YP_001563078.1| DNA/RNA non-specific endonuclease [Delftia a...   132   1e-29
ref|ZP_07043340.1| DNA/RNA non-specific endonuclease [Comamonas ...   132   2e-29
ref|YP_004489968.1| DNA/RNA non-specific endonuclease [Delftia s...   132   2e-29

>ref|ZP_06689307.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gb|EFF73826.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 275

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 64/103 (62%), Positives = 86/103 (83%), Gaps = 1/103 (0%)

Query: 1   MVPQNPRNNSGPWSKIERDTRKYVMRASGDVFVFTGPLFDATPATIGRGHIAVPARLFKL 60
           MVPQ+  +N+GPWS+IE+DTRKYVMRA+GDV+V+TGP + A PA+IG G +AVP+ +FK+
Sbjct: 173 MVPQDQTHNAGPWSRIEQDTRKYVMRAAGDVYVYTGPYYSAKPASIGSG-VAVPSHVFKV 231

Query: 61  VVDASTGRSWAYIQANRADTEVGAPITYEDFVRKTGLRLLGQG 103
           V DA+TGRSW + QAN A T+  API+YE+FVR+TG++LL  G
Sbjct: 232 VYDATTGRSWVHWQANSASTKESAPISYEEFVRRTGMQLLPSG 274


>ref|ZP_03541577.1| DNA/RNA non-specific endonuclease [Comamonas testosteroni KF-1]
 gb|EED65863.1| DNA/RNA non-specific endonuclease [Comamonas testosteroni KF-1]
          Length = 343

 Score =  133 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 66/108 (61%), Positives = 81/108 (75%), Gaps = 3/108 (2%)

Query: 1   MVPQNPRNNSGPWSKIERDTRKYVMRASGDVFVFTGPLFDATPATIGRGHIAVPARLFKL 60
           MVPQN  +N+G WS++E+ TRKY +RA GDVFVFTGP+F+   ATIG   +AVP  LFKL
Sbjct: 236 MVPQNQVHNAGAWSQVEQATRKYALRARGDVFVFTGPVFNKNAATIGESKVAVPDHLFKL 295

Query: 61  VVDASTGRSWAYIQANRADTEVGAPITYEDFVRKTGLRLLG---QGTG 105
           V DASTG+SW Y QAN ADT + API+YE+F R+TG+ LL    QG G
Sbjct: 296 VYDASTGKSWVYWQANSADTRMSAPISYEEFTRRTGMPLLAGVMQGHG 343


>ref|YP_001563078.1| DNA/RNA non-specific endonuclease [Delftia acidovorans SPH-1]
 gb|ABX34693.1| DNA/RNA non-specific endonuclease [Delftia acidovorans SPH-1]
          Length = 321

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 65/108 (60%), Positives = 82/108 (75%), Gaps = 1/108 (0%)

Query: 1   MVPQNPRNNSGPWSKIERDTRKYVMRASGDVFVFTGPLFDATPATIGRGHIAVPARLFKL 60
           MVPQ+  +N G WSK+E+DTR+Y  RA GDV+VFTGP+FD  P TIG G + VP+ +FKL
Sbjct: 214 MVPQDQTHNGGVWSKVEQDTRRYAQRAQGDVYVFTGPVFDGQPLTIGPGKVHVPSHIFKL 273

Query: 61  VVDASTGRSWAYIQANRADTEVGAPITYEDFVRKTGLRLL-GQGTGRG 107
           V DASTGR+WA+ QAN  DT + API+YE+F R+TG+ LL G   GRG
Sbjct: 274 VYDASTGRAWAHWQANSPDTRMSAPISYEEFTRRTGMPLLAGVMRGRG 321


>ref|ZP_07043340.1| DNA/RNA non-specific endonuclease [Comamonas testosteroni S44]
 gb|EFI63013.1| DNA/RNA non-specific endonuclease [Comamonas testosteroni S44]
          Length = 347

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/107 (60%), Positives = 81/107 (75%), Gaps = 1/107 (0%)

Query: 1   MVPQNPRNNSGPWSKIERDTRKYVMRASGDVFVFTGPLFDATPATIGRGHIAVPARLFKL 60
           MVPQN  +N+G WS++E+ TRKY +RA GDVFVFTGP+F+   +TIG   +AVP  LFKL
Sbjct: 240 MVPQNQVHNAGAWSQVEQATRKYALRARGDVFVFTGPVFNKNASTIGESKVAVPDYLFKL 299

Query: 61  VVDASTGRSWAYIQANRADTEVGAPITYEDFVRKTGLRLLGQGTGRG 107
           V DASTG+SW Y QAN ADT + API+YE+F R+TG+ LL  G  RG
Sbjct: 300 VYDASTGKSWVYWQANSADTRMSAPISYEEFTRRTGMPLLA-GVMRG 345


>ref|YP_004489968.1| DNA/RNA non-specific endonuclease [Delftia sp. Cs1-4]
 gb|AEF91613.1| DNA/RNA non-specific endonuclease [Delftia sp. Cs1-4]
          Length = 321

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 64/107 (59%), Positives = 81/107 (75%), Gaps = 1/107 (0%)

Query: 1   MVPQNPRNNSGPWSKIERDTRKYVMRASGDVFVFTGPLFDATPATIGRGHIAVPARLFKL 60
           MVPQ+  +N G WSK+E+DTR+Y  RA GDV+VFTGP+FD  P TIG G + VP+ +FKL
Sbjct: 214 MVPQDQTHNGGVWSKVEQDTRRYAQRAQGDVYVFTGPVFDGQPLTIGPGKVHVPSHIFKL 273

Query: 61  VVDASTGRSWAYIQANRADTEVGAPITYEDFVRKTGLRLLGQGTGRG 107
           V DASTGR+WA+ QAN  DT + API+YE+F R+TG+ LL  G  RG
Sbjct: 274 VYDASTGRAWAHWQANSPDTRMSAPISYEEFTRRTGMPLLA-GVMRG 319