BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4374.p         (307 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776879.1| hypothetical protein Hsero_3492 [Herbaspiril...   264   1e-68

>ref|YP_003776879.1| hypothetical protein Hsero_3492 [Herbaspirillum seropedicae SmR1]
 emb|CAP19669.1| hypothetical protein HS238.0267 [Herbaspirillum seropedicae]
 gb|ADJ64971.1| hypothetical protein Hsero_3492 [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 160/236 (67%), Positives = 200/236 (84%)

Query: 69  VQPRITYQGINTMMISGNQASAAIAAPLASSGYQTTPEPKKVQETESSKVTISSAALEKA 128
           V  RIT QG N M+ISG QAS    A L+S   QT  +P   Q  +S+KVTISS AL+KA
Sbjct: 6   VYSRITSQGTNAMIISGTQASPQAPAKLSSPLPQTAADPATSQAEDSAKVTISSKALQKA 65

Query: 129 TQSETQTDDLASQYRLSGPATLVSALNPVVYKMPEALIREMEVRGKEEAVRNAMSAQYAN 188
           + +E +TD+LAS YRL+GPATLVS+LNPVVY+MPEALI+EMEVRGKEEA RN +S+QYA 
Sbjct: 66  SDAEGKTDELASPYRLTGPATLVSSLNPVVYQMPEALIKEMEVRGKEEAARNQISSQYAR 125

Query: 189 EHQYQTIGQVLVDGKLFAEVNDAGGYGSIQNAIPGLSDAPLSPRERVEEIAQALKGKGKV 248
           +HQYQT+GQVLV+GKLFAEVNDAGGY S++N+IPGLSDA L+P+ER+EEIAQALKG+GKV
Sbjct: 126 DHQYQTVGQVLVNGKLFAEVNDAGGYASVKNSIPGLSDAALNPQERLEEIAQALKGQGKV 185

Query: 249 EVRYADFVPGLGGWGGPGAPDTMLSPFTARSVHDIFAEAIQGAERMRSSTLQAAKS 304
           E+RYA+F PG+GG GGPGAP++ML  FTAR++HDIFAEAI+ A R+R+++LQA++S
Sbjct: 186 EIRYANFEPGIGGSGGPGAPESMLPSFTARNIHDIFAEAIEAAGRLRAASLQASES 241